Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002709.1

Orthogroup ID

OG0021065

Physical Location & Seq

Genomic Coordinates Forward (+)

111253 .. 113722

Gene Structure 2470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggttgtcttgcagttggctactatttggttggagtgcaagggttccttagctggtacactacattggcccccctttgttatcgaggtgcagcagcggcagtctgaagataaggcacgacttcaggtttctgaagtggttctcgagcagataaggcaatttaaccaccttgatttgcattggcccccctttgttatcgaggtgcagcagcggcagtctgaagataagcaacggcagtacaacccctcaactggcatgtactccctcgaagttgttcaaattagcaaggtacaagctaatcaacgagcaggacgagctggaaggacacgtcctgggaaatgctatcggttatatccttccgttgcttaccatgaggagctgctggatgcaacaattcctgaaattcaacgttcttcacttgctggaagtgttctttatttgaaatccttggacctccctgatattgacattctcacattcgattttcttgattctccttcctctgaatctttacaagatgctctgaagcagttgtatcttattgatgctattgatgaaaatggattgatcacgagagttgggaaaacaatggctgagcttccactggaaccttcactgtcaagaaccttaatggaggcaaatgattgtggttgcttgtcccaggctttcacagttgctgctatgttatctgcagaaactacattgcttcctggtcgaaggtatacccaacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

244

Amino Acids

27.54

Weight (kDa)

5.18

Isoelectric Point (pI)

57.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_HA2	PF04408	174 - 202	9.2e-09	Helicase associated domain (HA2), winged-helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021065)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24140
rosa_multiflora	Rmu_sc0002709.1_g000030
rosa_samantha	Rh3AG330800 Rh3BG366800 Rh4DG307100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	722
AciI	CCGC	2 cut(s)	97, 211
AclI	AACGTT	1 cut(s)	409
AcsI	RAATTY	1 cut(s)	402
AcuI	CTGAAG	5 cut(s)	107, 126, 153, 240, 545
AfaI	GTAC	4 cut(s)	58, 239, 260, 291
AfiI	CCNNNNNNNGG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	278, 407, 442
AjiI	CACGTC	1 cut(s)	329
AjnI	CCWGG	3 cut(s)	331, 660, 709
AluBI	AGCT	5 cut(s)	53, 296, 317, 379, 598
AluI	AGCT	5 cut(s)	53, 296, 317, 379, 598
AlwNI	CAGNNNCTG	1 cut(s)	677
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	2 cut(s)	68, 182
ApeKI	GCWGC	6 cut(s)	91, 94, 205, 208, 379, 677
ApoI	RAATTY	1 cut(s)	402
Asp700I	GAANNNNTTC	2 cut(s)	138, 273
AspS9I	GGNCC	3 cut(s)	69, 183, 451
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	451
BauI	CACGAG	1 cut(s)	571
BbvI	GCAGC	6 cut(s)	103, 106, 217, 220, 366, 664
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	3 cut(s)	333, 662, 711
BclI	TGATCA	1 cut(s)	567
BfmI	CTRYAG	1 cut(s)	690
BisI	GCNGC	8 cut(s)	92, 95, 98, 206, 209, 212, 380, 678
BlpI	GCTNAGC	1 cut(s)	594
BlsI	GCNGC	8 cut(s)	93, 96, 99, 207, 210, 213, 381, 679
Bme1390I	CCNGG	3 cut(s)	333, 662, 711
Bme18I	GGWCC	1 cut(s)	451
BmeT110I	CYCGRG	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	329
BmgT120I	GGNCC	3 cut(s)	69, 183, 451
BmiI	GGNNCC	4 cut(s)	46, 71, 185, 609
BmrFI	CCNGG	3 cut(s)	333, 662, 711
BmsI	GCATC	3 cut(s)	376, 508, 535
Bpu10I	CCTNAGC	1 cut(s)	49
Bpu1102I	GCTNAGC	1 cut(s)	594
BsaJI	CCNNGG	3 cut(s)	332, 447, 660
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	256, 609
Bse3DI	GCAATG	1 cut(s)	701
BseBI	CCWGG	3 cut(s)	333, 662, 711
BseDI	CCNNGG	3 cut(s)	332, 447, 660
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	701
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	2 cut(s)	256, 609
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	6 cut(s)	103, 106, 217, 220, 366, 664
BsgI	GTGCAG	2 cut(s)	110, 224
BshFI	GGCC	2 cut(s)	70, 184
BsiHKCI	CYCGRG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	643
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	70, 184
BsoBI	CYCGRG	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	567
Bsp1720I	GCTNAGC	1 cut(s)	594
BspACI	CCGC	2 cut(s)	97, 211
BspANI	GGCC	2 cut(s)	70, 184
BspCNI	CTCAG	1 cut(s)	586
BspLI	GGNNCC	4 cut(s)	46, 71, 185, 609
BspMAI	CTGCAG	1 cut(s)	694
BsrDI	GCAATG	1 cut(s)	701
BsrI	ACTGG	2 cut(s)	256, 609
BssECI	CCNNGG	3 cut(s)	332, 447, 660
BssMI	GATC	1 cut(s)	567
BssNAI	GTATAC	1 cut(s)	723
BssSI	CACGAG	1 cut(s)	571
BssT1I	CCWWGG	1 cut(s)	447
Bst1107I	GTATAC	1 cut(s)	723
Bst2BI	CACGAG	1 cut(s)	571
Bst2UI	CCWGG	3 cut(s)	333, 662, 711
Bst4CI	ACNGT	2 cut(s)	618, 673
BstDEI	CTNAG	2 cut(s)	49, 594
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	1 cut(s)	570
BstMBI	GATC	1 cut(s)	567
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 154, 211, 314
BstNI	CCWGG	3 cut(s)	333, 662, 711
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	3 cut(s)	331, 660, 709
BstSFI	CTRYAG	1 cut(s)	690
BstV1I	GCAGC	6 cut(s)	103, 106, 217, 220, 366, 664
BstZ17I	GTATAC	1 cut(s)	723
BsuRI	GGCC	2 cut(s)	70, 184
BtrI	CACGTC	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	602, 614
CaiI	CAGNNNCTG	1 cut(s)	677
Cfr13I	GGNCC	3 cut(s)	69, 183, 451
Csp6I	GTAC	4 cut(s)	57, 238, 259, 290
CviAII	CATG	2 cut(s)	256, 371
CviQI	GTAC	4 cut(s)	57, 238, 259, 290
DdeI	CTNAG	2 cut(s)	49, 594
DpnI	GATC	1 cut(s)	569
DpnII	GATC	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	5 cut(s)	107, 126, 153, 240, 545
Eco88I	CYCGRG	1 cut(s)	143
EcoRII	CCWGG	3 cut(s)	331, 660, 709
EcoT14I	CCWWGG	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	2 cut(s)	259, 374
FaiI	YATR	5 cut(s)	257, 352, 372, 683, 723
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	643
FatI	CATG	2 cut(s)	255, 370
FbaI	TGATCA	1 cut(s)	567
FblI	GTMKAC	1 cut(s)	722
Fnu4HI	GCNGC	8 cut(s)	92, 95, 98, 206, 209, 212, 380, 678
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	8 cut(s)	92, 95, 98, 206, 209, 212, 380, 678
GluI	GCNGC	8 cut(s)	92, 95, 98, 206, 209, 212, 380, 678
HaeIII	GGCC	2 cut(s)	70, 184
Hin1II	CATG	2 cut(s)	259, 374
HinfI	GANTC	2 cut(s)	491, 506
Hpy166II	GTNNAC	2 cut(s)	59, 723
Hpy188I	TCNGA	5 cut(s)	106, 133, 220, 505, 525
Hpy188III	TCNNGA	5 cut(s)	143, 398, 488, 571, 621
Hpy8I	GTNNAC	2 cut(s)	59, 723
HpyAV	CCTTC	5 cut(s)	315, 366, 507, 621, 711
HpyCH4III	ACNGT	2 cut(s)	618, 673
HpyCH4IV	ACGT	2 cut(s)	328, 409
HpyCH4V	TGCA	7 cut(s)	13, 39, 91, 178, 205, 389, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 154, 211, 314
HpyF3I	CTNAG	2 cut(s)	49, 594
HpySE526I	ACGT	2 cut(s)	328, 409
Hsp92II	CATG	2 cut(s)	259, 374
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	1 cut(s)	567
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	6 cut(s)	103, 106, 217, 220, 366, 664
LweI	GCATC	3 cut(s)	376, 508, 535
MaeII	ACGT	2 cut(s)	328, 409
MalI	GATC	1 cut(s)	569
MboI	GATC	1 cut(s)	567
MboII	GAAGA	3 cut(s)	119, 233, 405
MluCI	AATT	4 cut(s)	158, 279, 393, 402
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	8 cut(s)	79, 193, 256, 275, 367, 464, 511, 628
MroXI	GAANNNNTTC	2 cut(s)	138, 273
MseI	TTAA	2 cut(s)	162, 629
MspA1I	CMGCKG	2 cut(s)	97, 211
MspR9I	CCNGG	3 cut(s)	333, 662, 711
MvaI	CCWGG	3 cut(s)	333, 662, 711
MwoI	GCNNNNNNNGC	4 cut(s)	97, 154, 211, 314
NdeII	GATC	1 cut(s)	567
NlaIII	CATG	2 cut(s)	259, 374
NlaIV	GGNNCC	4 cut(s)	46, 71, 185, 609
NspI	RCATGY	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PdmI	GAANNNNTTC	2 cut(s)	138, 273
PfeI	GAWTC	2 cut(s)	491, 506
PkrI	GCNGC	8 cut(s)	93, 96, 99, 207, 210, 213, 381, 679
Psp1406I	AACGTT	1 cut(s)	409
Psp6I	CCWGG	3 cut(s)	331, 660, 709
PspGI	CCWGG	3 cut(s)	331, 660, 709
PspN4I	GGNNCC	4 cut(s)	46, 71, 185, 609
PspPI	GGNCC	3 cut(s)	69, 183, 451
PstI	CTGCAG	1 cut(s)	694
PstNI	CAGNNNCTG	1 cut(s)	677
RsaI	GTAC	4 cut(s)	58, 239, 260, 291
RsaNI	GTAC	4 cut(s)	57, 238, 259, 290
SaqAI	TTAA	2 cut(s)	162, 629
SatI	GCNGC	8 cut(s)	92, 95, 98, 206, 209, 212, 380, 678
Sau3AI	GATC	1 cut(s)	567
Sau96I	GGNCC	3 cut(s)	69, 183, 451
ScrFI	CCNGG	3 cut(s)	333, 662, 711
SfaNI	GCATC	3 cut(s)	376, 508, 535
SfcI	CTRYAG	1 cut(s)	690
Sfr274I	CTCGAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	451
SlaI	CTCGAG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	4 cut(s)	158, 279, 393, 402
SsiI	CCGC	2 cut(s)	97, 211
StyD4I	CCNGG	3 cut(s)	331, 660, 709
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	2 cut(s)	618, 673
TaiI	ACGT	2 cut(s)	331, 412
TaqI	TCGA	6 cut(s)	84, 144, 198, 267, 480, 715
TasI	AATT	4 cut(s)	158, 279, 393, 402
TatI	WGTACW	2 cut(s)	237, 258
TauI	GCSGC	2 cut(s)	100, 214
TfiI	GAWTC	2 cut(s)	491, 506
Tru1I	TTAA	2 cut(s)	162, 629
Tru9I	TTAA	2 cut(s)	162, 629
TscAI	CASTG	2 cut(s)	609, 621
TseI	GCWGC	6 cut(s)	91, 94, 205, 208, 379, 677
TspDTI	ATGAA	1 cut(s)	570
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	2 cut(s)	609, 621
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	1 cut(s)	402
XceI	RCATGY	1 cut(s)	259
XhoI	CTCGAG	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	722
XmnI	GAANNNNTTC	2 cut(s)	138, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.