Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012265

Physical Location & Seq

Genomic Coordinates Forward (+)

26417992 .. 26423678

Gene Structure 5687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g24140.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2097 bp

ATGGCGGAGCTCCCAATCCTCCAGTTCGAAGAGAAAATCATCGAAACAGTACAAAACAGCCCCGTCGTGGTCATAATCGGCGAGACCGGTTCCGGTAAGAGCACGCAGCTCTCTCAGATGCTCCACCGCAGAGGCTACACCAACTCCGGCATCGTCGGCGTCACTCAGCCCCGCCGTGTCGCCGCCGTCTCCGTCGCCAGACGAGTTTCGCAGGAGCTCAATGTCCGGCTCGGCGACGAAGTCGGATACGCCATCAGATTCGAAGATAGAACTTCCGATAGGACTCGGATCAAGTACTTGACTGACGGAGTTCTCCTCCGTGAAAGCTTATCCAACCCGGAGCTCGATCAGTACTCTGTGATTATACTCGACGAGGCTCACGAGAGAAGTCTCAACACGGACATATTGCTGGGACTGATGAAGCGGTTGGTGAAGCGTCGCGCTTCGAATTTGAAGGTTATTGTTACTTCTGCAACTCTTGATGGTGATAAAGTGTCACAGTTCTTTTCGAATTGCCCTGTGCTGAATGTGCCCGGGAAGCTTTACCCTGTGGAGATATTGTACAGCAATGAGCGTCCTAAGAGCTATCTTGAGGCTTCGTTAAAGACAGCTCTCGATATACATATAAAGGAACCTGAAGGTGATGTCTTGATATTCATGACTGGGCAGGATGACATAGAGAAGTTGGTCTCTAAGTTAGAAGATAGAGTTAGAAGCCTGGAGGAAGGATCTGTCTTGGATGCCATAATCCTTCCTCTTCACGGTTCTCTGCAGCCTGAAATGCAGGTACGTGTATTTAGTCCCCCACCTCCTAATTGTAGGAGATTTATTGTTGCCACAAACATTGCTGAAACTTCTTTGACTGTTGATGGCGTTGTGTATGTTATTGATTCTGGTTATGTTAAGCAACGGCAGTACAACCCCTCAACTGGCATGTACTCCCTCGATGTTGTTCAAATTAGCAAGGTACAGGCCAATCAACGAGCAGGACGAGCTGGGAGGACACGTCCTGGGAAATGCTATCGATTATATCCTTCCATCGATTACCATGAGGAGCTCCTCGATGCAACAGTTCCTGAAATTCAACGTTCTTCACTTGCTGGAAGTGTTCTTTATTTGAAATCTTTGGACCTCCCTGACATTGACATTCTCAAATTCGATTTTCTTGATTCTCCTTCCTCTGAATCTTTACAAGATGCTCTGAAGCAGTTGTATCTTATTGACGCTATTGATGAAGATGGATTGATCACGAGAGTTGGGAAGACAATGGCTGAACTTCCACTAGAACCTTCACTGTCAAGAACCTTGATGGAGGCAAACGATAATGGTTGCTTGTCCCAGGCTTTGACTGTTGCTGCTATGTTATCTGCAGAAACTACATTGCTTCCTGGTCGAAGCAAGAGTACTGAGAAGAAAAGGAAACATGATCATTTGGACCTTCCTGATGGTTCTGGTTGGGGTGATCATATCCAGTTGCTACAGATCTATGAGTGCTGGCATCAAACTCACTATAACATTGATTGGTGCAAAGACCGTGGCTTGCAGGTAAGAGGGATGACATTTGTCAAGGATGTAAGGAAACAGCTGTGTCAAATCATGCAAAAAGTGGCAAAGGGATCATTAGATGTACAGACAAGCAGAAGAGGGAAAGAAACCCAACAGGATTATAATAACTTGAGGAAGGCTTTGTGTGTGGGGTATGCAAATCAGCTTGCTGAGAGAATGGTATTTCACAATGGCTATCGAACCTTAGGTTTTAAGCCCCAAGTAGTACAGGTGCATCCATCCTCTGTGCTAAAACCAGATGATGAAGGGAAATTTCCAAATTATGTCGTGTACCAGGAACTTATTGCGACTACTCGTCCATACTTGCGCACTGTATGTGCTGTAAATGTTTCATGGGTTGCACCCATTTTGAACAAGGTTAATAACCTAAACATCAACAAGCTGAGCGGTGGGATTGATAGTATCGAAGAGCATGCAGAGGGAAATCTTGCTAGTTTGCCAAAGAAAGATGTTACAGCAGTTCCTGATGATCAAGAAAGTAAAATACAAGCGGCTAGAGAACGATTTCTTGCTCGTAAAGGAAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

699

Amino Acids

78.16

Weight (kDa)

7.2

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	67 - 196	8.1e-12	Helicase conserved C-terminal domain
WHD_HA2	PF04408	261 - 289	1.7e-08	Helicase associated domain (HA2), winged-helix
HA2_C	PF21010	290 - 353	2.7e-08	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	420 - 501	2e-19	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27900 AT1G27900 AT1G27900
fragaria_vesca	FvH4_4g24140 FvH4_4g24140
malus_domestica	MD13G1115200.v1.1
prunus_persica	Prupe.1G232100_v2.0.a1 Prupe.1G232100_v2.0.a1
pyrus_communis	pycom13g09970
rosa_chinensis	RchiOBHm_Chr4g0430911
rosa_laevigata	RLG00000006939
rosa_multiflora	Rmu_sc0006263.1_g000011
rosa_roxburghii	Rroxscaffold_5G00372600
rosa_rugosa	Rorug04G0247300
rosa_samantha	Rh4AG302800 Rh4AG303700 Rh4BG310900 Rh4CG327300
rosa_wichuraiana	Rw4G026320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1668
Acc16I	TGCGCA	1 cut(s)	1874
Acc36I	ACCTGC	2 cut(s)	775, 1534
AccBSI	CCGCTC	1 cut(s)	1953
AccII	CGCG	1 cut(s)	441
AciI	CCGC	7 cut(s)	5, 127, 172, 183, 424, 1953, 2057
AclI	AACGTT	1 cut(s)	1087
AclWI	GGATC	3 cut(s)	296, 736, 1624
AcsI	RAATTY	4 cut(s)	448, 1080, 1154, 1817
AcuI	CTGAAG	2 cut(s)	657, 1223
AcyI	GRCGYC	1 cut(s)	159
AfiI	CCNNNNNNNGG	3 cut(s)	67, 761, 929
AflIII	ACRYGT	2 cut(s)	790, 1004
AgeI	ACCGGT	1 cut(s)	86
AgsI	TTSAA	5 cut(s)	454, 956, 1085, 1120, 1918
AhdI	GACNNNNNGTC	1 cut(s)	1860
AjiI	CACGTC	1 cut(s)	1007
AjnI	CCWGG	5 cut(s)	717, 1009, 1338, 1387, 1839
Alw21I	GWGCWC	5 cut(s)	12, 104, 219, 345, 1059
Alw26I	GTCTC	4 cut(s)	77, 193, 395, 694
AlwI	GGATC	3 cut(s)	296, 736, 1624
AlwNI	CAGNNNCTG	2 cut(s)	1076, 2030
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	1 cut(s)	972
ApeKI	GCWGC	3 cut(s)	106, 772, 1355
ApoI	RAATTY	4 cut(s)	448, 1080, 1154, 1817
AsiGI	ACCGGT	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	2070
AspLEI	GCGC	2 cut(s)	443, 1875
AspS9I	GGNCC	2 cut(s)	1129, 1435
AsuC2I	CCSGG	3 cut(s)	338, 534, 535
AsuHPI	GGTGA	4 cut(s)	442, 497, 653, 1472
AsuII	TTCGAA	4 cut(s)	27, 261, 446, 509
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	2 cut(s)	1129, 1435
AxyI	CCTNAGG	1 cut(s)	1750
BaeGI	GKGCMC	1 cut(s)	534
BanII	GRGCYC	4 cut(s)	12, 219, 345, 1059
BarI	GAAGNNNNNNTAC	2 cut(s)	1387, 1419
BauI	CACGAG	2 cut(s)	380, 1249
BbsI	GAAGAC	1 cut(s)	1268
Bbv12I	GWGCWC	5 cut(s)	12, 104, 219, 345, 1059
BbvI	GCAGC	3 cut(s)	118, 784, 1342
BccI	CCATC	8 cut(s)	260, 476, 863, 1046, 1232, 1303, 1439, 1792
BceAI	ACGGC	3 cut(s)	159, 170, 926
BcgI	CGANNNNNNTGC	2 cut(s)	1961, 1995
BciT130I	CCWGG	5 cut(s)	719, 1011, 1340, 1389, 1841
BciVI	GTATCC	1 cut(s)	239
BclI	TGATCA	4 cut(s)	1245, 1426, 1462, 2035
BcnI	CCSGG	3 cut(s)	338, 534, 535
BcoDI	GTCTC	4 cut(s)	77, 193, 395, 694
BfaI	CTAG	3 cut(s)	1283, 1998, 2061
BfmI	CTRYAG	3 cut(s)	770, 1368, 1478
BfuAI	ACCTGC	2 cut(s)	775, 1534
BfuI	GTATCC	1 cut(s)	239
BglII	AGATCT	1 cut(s)	1482
BisI	GCNGC	5 cut(s)	107, 183, 773, 1356, 2058
BlpI	GCTNAGC	1 cut(s)	1949
BlsI	GCNGC	5 cut(s)	108, 184, 774, 1357, 2059
BmcAI	AGTACT	3 cut(s)	296, 353, 1405
Bme1390I	CCNGG	8 cut(s)	338, 534, 535, 719, 1011, 1340, 1389, 1841
Bme18I	GGWCC	2 cut(s)	1129, 1435
BmeRI	GACNNNNNGTC	1 cut(s)	1860
BmeT110I	CYCGRG	1 cut(s)	533
BmgBI	CACGTC	1 cut(s)	1007
BmgT120I	GGNCC	2 cut(s)	1129, 1435
BmiI	GGNNCC	2 cut(s)	91, 633
BmrFI	CCNGG	8 cut(s)	338, 534, 535, 719, 1011, 1340, 1389, 1841
BmrI	ACTGGG	1 cut(s)	672
BmsI	GCATC	7 cut(s)	108, 159, 730, 1054, 1186, 1507, 1789
BmuI	ACTGGG	1 cut(s)	672
BoxI	GACNNNNGTC	1 cut(s)	1562
BpiI	GAAGAC	1 cut(s)	1268
BplI	GAGNNNNNCTC	2 cut(s)	300, 332
BpmI	CTGGAG	2 cut(s)	5, 740
Bpu1102I	GCTNAGC	1 cut(s)	1949
Bpu14I	TTCGAA	4 cut(s)	27, 261, 446, 509
BpuEI	CTTGAG	2 cut(s)	611, 1696
BpuMI	CCSGG	3 cut(s)	338, 534, 535
Bsa29I	ATCGAT	2 cut(s)	1024, 1041
BsaAI	YACGTR	1 cut(s)	791
BsaHI	GRCGYC	1 cut(s)	159
BsaI	GGTCTC	2 cut(s)	77, 694
BsaJI	CCNNGG	4 cut(s)	533, 1010, 1338, 1534
BsaWI	WCCGGW	2 cut(s)	86, 92
BsaXI	ACNNNNNCTCC	6 cut(s)	128, 158, 545, 575, 991, 1021
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 761, 929
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	4 cut(s)	22, 667, 934, 1471
Bse21I	CCTNAGG	1 cut(s)	1750
Bse3DI	GCAATG	3 cut(s)	574, 843, 1379
BseBI	CCWGG	5 cut(s)	719, 1011, 1340, 1389, 1841
BseCI	ATCGAT	2 cut(s)	1024, 1041
BseDI	CCNNGG	4 cut(s)	533, 1010, 1338, 1534
BseGI	GGATG	6 cut(s)	676, 745, 1560, 1576, 1780, 1784
BseLI	CCNNNNNNNGG	3 cut(s)	67, 761, 929
BseMI	GCAATG	3 cut(s)	574, 843, 1379
BseMII	CTCAG	5 cut(s)	128, 179, 1398, 1707, 1940
BseNI	ACTGG	4 cut(s)	22, 667, 934, 1471
BseRI	GAGGAG	3 cut(s)	305, 1049, 1067
BseSI	GKGCMC	1 cut(s)	534
BseXI	GCAGC	3 cut(s)	118, 784, 1342
BseYI	CCCAGC	2 cut(s)	409, 995
Bsh1236I	CGCG	1 cut(s)	441
BshFI	GGCC	1 cut(s)	974
BshTI	ACCGGT	1 cut(s)	86
BshVI	ATCGAT	2 cut(s)	1024, 1041
BsiHKAI	GWGCWC	5 cut(s)	12, 104, 219, 345, 1059
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	6 cut(s)	87, 93, 147, 226, 338, 534
BslFI	GGGAC	3 cut(s)	426, 786, 1321
BslI	CCNNNNNNNGG	3 cut(s)	67, 761, 929
BsmAI	GTCTC	4 cut(s)	77, 193, 395, 694
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	3 cut(s)	426, 786, 1321
BsnI	GGCC	1 cut(s)	974
Bso31I	GGTCTC	2 cut(s)	77, 694
BsoBI	CYCGRG	1 cut(s)	533
Bsp119I	TTCGAA	4 cut(s)	27, 261, 446, 509
Bsp1286I	GDGCHC	6 cut(s)	12, 104, 219, 345, 534, 1059
Bsp1407I	TGTACA	2 cut(s)	561, 1627
Bsp143I	GATC	9 cut(s)	288, 346, 728, 1245, 1426, 1462, 1482, 1616, 2035
Bsp1720I	GCTNAGC	1 cut(s)	1949
BspACI	CCGC	7 cut(s)	5, 127, 172, 183, 424, 1953, 2057
BspANI	GGCC	1 cut(s)	974
BspCNI	CTCAG	5 cut(s)	127, 178, 1399, 1708, 1941
BspDI	ATCGAT	2 cut(s)	1024, 1041
BspFNI	CGCG	1 cut(s)	441
BspHI	TCATGA	1 cut(s)	657
BspLI	GGNNCC	2 cut(s)	91, 633
BspMAI	CTGCAG	2 cut(s)	774, 1372
BspMI	ACCTGC	2 cut(s)	775, 1534
BspPI	GGATC	3 cut(s)	296, 736, 1624
BspQI	GCTCTTC	1 cut(s)	1968
BspT104I	TTCGAA	4 cut(s)	27, 261, 446, 509
BspTNI	GGTCTC	2 cut(s)	77, 694
BsrBI	CCGCTC	1 cut(s)	1953
BsrDI	GCAATG	3 cut(s)	574, 843, 1379
BsrFI	RCCGGY	1 cut(s)	86
BsrGI	TGTACA	2 cut(s)	561, 1627
BsrI	ACTGG	4 cut(s)	22, 667, 934, 1471
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	4 cut(s)	533, 1010, 1338, 1534
BssMI	GATC	9 cut(s)	288, 346, 728, 1245, 1426, 1462, 1482, 1616, 2035
BssNI	GRCGYC	1 cut(s)	159
BssSI	CACGAG	2 cut(s)	380, 1249
Bst2BI	CACGAG	2 cut(s)	380, 1249
Bst2UI	CCWGG	5 cut(s)	719, 1011, 1340, 1389, 1841
Bst4CI	ACNGT	9 cut(s)	49, 501, 764, 865, 1072, 1296, 1351, 1535, 1879
Bst6I	CTCTTC	4 cut(s)	24, 762, 1636, 1968
BstACI	GRCGYC	1 cut(s)	159
BstAUI	TGTACA	2 cut(s)	561, 1627
BstBAI	YACGTR	1 cut(s)	791
BstBI	TTCGAA	4 cut(s)	27, 261, 446, 509
BstC8I	GCNNGC	5 cut(s)	104, 1496, 1541, 1713, 1980
BstDEI	CTNAG	8 cut(s)	114, 165, 579, 693, 1407, 1716, 1750, 1949
BstDSI	CCRYGG	1 cut(s)	1534
BstF5I	GGATG	6 cut(s)	676, 745, 1560, 1576, 1780, 1784
BstFNI	CGCG	1 cut(s)	441
BstHHI	GCGC	2 cut(s)	443, 1875
BstKTI	GATC	9 cut(s)	291, 349, 731, 1248, 1429, 1465, 1485, 1619, 2038
BstMAI	GTCTC	4 cut(s)	77, 193, 395, 694
BstMBI	GATC	9 cut(s)	288, 346, 728, 1245, 1426, 1462, 1482, 1616, 2035
BstMWI	GCNNNNNNNGC	5 cut(s)	156, 529, 538, 781, 992
BstNI	CCWGG	5 cut(s)	719, 1011, 1340, 1389, 1841
BstNSI	RCATGY	2 cut(s)	937, 1982
BstPAI	GACNNNNGTC	1 cut(s)	1562
BstSCI	CCNGG	8 cut(s)	336, 532, 533, 717, 1009, 1338, 1387, 1839
BstSFI	CTRYAG	3 cut(s)	770, 1368, 1478
BstSLI	GKGCMC	1 cut(s)	534
BstUI	CGCG	1 cut(s)	441
BstV1I	GCAGC	3 cut(s)	118, 784, 1342
BstV2I	GAAGAC	1 cut(s)	1268
BstX2I	RGATCY	2 cut(s)	728, 1482
BstYI	RGATCY	2 cut(s)	728, 1482
Bsu15I	ATCGAT	2 cut(s)	1024, 1041
Bsu36I	CCTNAGG	1 cut(s)	1750
BsuI	GTATCC	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	974
BsuTUI	ATCGAT	2 cut(s)	1024, 1041
BtgI	CCRYGG	1 cut(s)	1534
BtrI	CACGTC	1 cut(s)	1007
BtsCI	GGATG	6 cut(s)	676, 745, 1560, 1576, 1780, 1784
BtsIMutI	CAGTG	2 cut(s)	1292, 1875
BveI	ACCTGC	2 cut(s)	775, 1534
Cac8I	GCNNGC	5 cut(s)	104, 1496, 1541, 1713, 1980
CaiI	CAGNNNCTG	2 cut(s)	1076, 2030
CciI	TCATGA	1 cut(s)	657
CfoI	GCGC	2 cut(s)	443, 1875
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	1129, 1435
Cfr9I	CCCGGG	1 cut(s)	533
ClaI	ATCGAT	2 cut(s)	1024, 1041
CseI	GACGC	4 cut(s)	148, 425, 563, 1232
CspAI	ACCGGT	1 cut(s)	86
CspCI	CAANNNNNGTGG	4 cut(s)	826, 861, 1516, 1551
CviAII	CATG	7 cut(s)	658, 934, 1049, 1424, 1597, 1899, 1979
DdeI	CTNAG	8 cut(s)	114, 165, 579, 693, 1407, 1716, 1750, 1949
DpnI	GATC	9 cut(s)	290, 348, 730, 1247, 1428, 1464, 1484, 1618, 2037
DpnII	GATC	9 cut(s)	288, 346, 728, 1245, 1426, 1462, 1482, 1616, 2035
DriI	GACNNNNNGTC	1 cut(s)	1860
Eam1104I	CTCTTC	4 cut(s)	24, 762, 1636, 1968
Eam1105I	GACNNNNNGTC	1 cut(s)	1860
EarI	CTCTTC	4 cut(s)	24, 762, 1636, 1968
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	4 cut(s)	10, 217, 343, 1057
Eco24I	GRGCYC	4 cut(s)	12, 219, 345, 1059
Eco31I	GGTCTC	2 cut(s)	77, 694
Eco47I	GGWCC	2 cut(s)	1129, 1435
Eco53kI	GAGCTC	4 cut(s)	10, 217, 343, 1057
Eco57I	CTGAAG	2 cut(s)	657, 1223
Eco81I	CCTNAGG	1 cut(s)	1750
Eco88I	CYCGRG	1 cut(s)	533
EcoICRI	GAGCTC	4 cut(s)	10, 217, 343, 1057
EcoRII	CCWGG	5 cut(s)	717, 1009, 1338, 1387, 1839
EcoT38I	GRGCYC	4 cut(s)	12, 219, 345, 1059
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	7 cut(s)	661, 937, 1052, 1427, 1600, 1902, 1982
FaqI	GGGAC	3 cut(s)	426, 786, 1321
FatI	CATG	7 cut(s)	657, 933, 1048, 1423, 1596, 1898, 1978
FauI	CCCGC	1 cut(s)	179
FbaI	TGATCA	4 cut(s)	1245, 1426, 1462, 2035
Fnu4HI	GCNGC	5 cut(s)	107, 183, 773, 1356, 2058
FokI	GGATG	6 cut(s)	683, 752, 1567, 1583, 1767, 1771
FriOI	GRGCYC	4 cut(s)	12, 219, 345, 1059
Fsp4HI	GCNGC	5 cut(s)	107, 183, 773, 1356, 2058
FspBI	CTAG	3 cut(s)	1283, 1998, 2061
FspI	TGCGCA	1 cut(s)	1874
GlaI	GCGC	2 cut(s)	442, 1874
GluI	GCNGC	5 cut(s)	107, 183, 773, 1356, 2058
GsaI	CCCAGC	2 cut(s)	413, 999
GsuI	CTGGAG	2 cut(s)	5, 740
HaeIII	GGCC	1 cut(s)	974
HapII	CCGG	6 cut(s)	87, 93, 147, 226, 338, 534
HgaI	GACGC	4 cut(s)	148, 425, 563, 1232
HhaI	GCGC	2 cut(s)	443, 1875
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	7 cut(s)	661, 937, 1052, 1427, 1600, 1902, 1982
Hin6I	GCGC	2 cut(s)	441, 1873
HinP1I	GCGC	2 cut(s)	441, 1873
HindIII	AAGCTT	2 cut(s)	325, 539
HinfI	GANTC	5 cut(s)	258, 283, 890, 1169, 1184
HpaII	CCGG	6 cut(s)	87, 93, 147, 226, 338, 534
HphI	GGTGA	4 cut(s)	442, 497, 653, 1472
Hpy166II	GTNNAC	1 cut(s)	1837
Hpy188I	TCNGA	7 cut(s)	117, 245, 257, 277, 288, 1183, 1203
Hpy8I	GTNNAC	1 cut(s)	1837
Hpy99I	CGWCG	6 cut(s)	68, 158, 197, 239, 374, 441
HpyCH4III	ACNGT	9 cut(s)	49, 501, 764, 865, 1072, 1296, 1351, 1535, 1879
HpyCH4IV	ACGT	3 cut(s)	790, 1006, 1087
HpyF10VI	GCNNNNNNNGC	5 cut(s)	156, 529, 538, 781, 992
HpyF3I	CTNAG	8 cut(s)	114, 165, 579, 693, 1407, 1716, 1750, 1949
HpySE526I	ACGT	3 cut(s)	790, 1006, 1087
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	7 cut(s)	661, 937, 1052, 1427, 1600, 1902, 1982
HspAI	GCGC	2 cut(s)	441, 1873
Ksp22I	TGATCA	4 cut(s)	1245, 1426, 1462, 2035
Kzo9I	GATC	9 cut(s)	288, 346, 728, 1245, 1426, 1462, 1482, 1616, 2035
LguI	GCTCTTC	1 cut(s)	1968
LmnI	GCTCC	7 cut(s)	7, 15, 126, 214, 340, 1054, 1062
Lsp1109I	GCAGC	3 cut(s)	118, 784, 1342
LweI	GCATC	7 cut(s)	108, 159, 730, 1054, 1186, 1507, 1789
MaeI	CTAG	3 cut(s)	1283, 1998, 2061
MaeII	ACGT	3 cut(s)	790, 1006, 1087
MaeIII	GTNAC	4 cut(s)	160, 463, 495, 2017
MalI	GATC	9 cut(s)	290, 348, 730, 1247, 1428, 1464, 1484, 1618, 2037
MbiI	CCGCTC	1 cut(s)	1953
MboI	GATC	9 cut(s)	288, 346, 728, 1245, 1426, 1462, 1482, 1616, 2035
MflI	RGATCY	2 cut(s)	728, 1482
MhlI	GDGCHC	6 cut(s)	12, 104, 219, 345, 534, 1059
MluCI	AATT	8 cut(s)	448, 511, 814, 957, 1080, 1154, 1817, 1825
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	2 cut(s)	223, 357
MroXI	GAANNNNTTC	1 cut(s)	2070
MseI	TTAA	4 cut(s)	602, 903, 1758, 1926
MspA1I	CMGCKG	1 cut(s)	1585
MspI	CCGG	6 cut(s)	87, 93, 147, 226, 338, 534
MspR9I	CCNGG	8 cut(s)	338, 534, 535, 719, 1011, 1340, 1389, 1841
MvaI	CCWGG	5 cut(s)	719, 1011, 1340, 1389, 1841
MvnI	CGCG	1 cut(s)	441
MwoI	GCNNNNNNNGC	5 cut(s)	156, 529, 538, 781, 992
NciI	CCSGG	3 cut(s)	338, 534, 535
NdeII	GATC	9 cut(s)	288, 346, 728, 1245, 1426, 1462, 1482, 1616, 2035
NlaIII	CATG	7 cut(s)	661, 937, 1052, 1427, 1600, 1902, 1982
NlaIV	GGNNCC	2 cut(s)	91, 633
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	2 cut(s)	160, 495
NsbI	TGCGCA	1 cut(s)	1874
NspI	RCATGY	2 cut(s)	937, 1982
NspV	TTCGAA	4 cut(s)	27, 261, 446, 509
PaeI	GCATGC	1 cut(s)	1982
PagI	TCATGA	1 cut(s)	657
PciSI	GCTCTTC	1 cut(s)	1968
PcsI	WCGNNNNNNNCGW	2 cut(s)	378, 988
PdmI	GAANNNNTTC	1 cut(s)	2070
PfeI	GAWTC	4 cut(s)	258, 890, 1169, 1184
PflFI	GACNNNGTC	1 cut(s)	239
PinAI	ACCGGT	1 cut(s)	86
PkrI	GCNGC	5 cut(s)	108, 184, 774, 1357, 2059
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Ppu21I	YACGTR	1 cut(s)	791
PshAI	GACNNNNGTC	1 cut(s)	1562
PsiI	TTATAA	1 cut(s)	1668
Psp124BI	GAGCTC	4 cut(s)	12, 219, 345, 1059
Psp1406I	AACGTT	1 cut(s)	1087
Psp6I	CCWGG	5 cut(s)	717, 1009, 1338, 1387, 1839
PspFI	CCCAGC	2 cut(s)	409, 995
PspGI	CCWGG	5 cut(s)	717, 1009, 1338, 1387, 1839
PspN4I	GGNNCC	2 cut(s)	91, 633
PspPI	GGNCC	2 cut(s)	1129, 1435
PstI	CTGCAG	2 cut(s)	774, 1372
PstNI	CAGNNNCTG	2 cut(s)	1076, 2030
PsuI	RGATCY	2 cut(s)	728, 1482
PsyI	GACNNNGTC	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	1585
SacI	GAGCTC	4 cut(s)	12, 219, 345, 1059
SapI	GCTCTTC	1 cut(s)	1968
SaqAI	TTAA	4 cut(s)	602, 903, 1758, 1926
SatI	GCNGC	5 cut(s)	107, 183, 773, 1356, 2058
Sau3AI	GATC	9 cut(s)	288, 346, 728, 1245, 1426, 1462, 1482, 1616, 2035
Sau96I	GGNCC	2 cut(s)	1129, 1435
ScaI	AGTACT	3 cut(s)	296, 353, 1405
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	8 cut(s)	338, 534, 535, 719, 1011, 1340, 1389, 1841
SduI	GDGCHC	6 cut(s)	12, 104, 219, 345, 534, 1059
SfaNI	GCATC	7 cut(s)	108, 159, 730, 1054, 1186, 1507, 1789
SfcI	CTRYAG	3 cut(s)	770, 1368, 1478
SfuI	TTCGAA	4 cut(s)	27, 261, 446, 509
SinI	GGWCC	2 cut(s)	1129, 1435
SmaI	CCCGGG	1 cut(s)	535
SmlI	CTYRAG	2 cut(s)	590, 1675
SmoI	CTYRAG	2 cut(s)	590, 1675
SphI	GCATGC	1 cut(s)	1982
Sse9I	AATT	8 cut(s)	448, 511, 814, 957, 1080, 1154, 1817, 1825
SsiI	CCGC	7 cut(s)	5, 127, 172, 183, 424, 1953, 2057
SspMI	CTAG	3 cut(s)	1283, 1998, 2061
SstI	GAGCTC	4 cut(s)	12, 219, 345, 1059
StyD4I	CCNGG	8 cut(s)	336, 532, 533, 717, 1009, 1338, 1387, 1839
TaaI	ACNGT	9 cut(s)	49, 501, 764, 865, 1072, 1296, 1351, 1535, 1879
TaiI	ACGT	3 cut(s)	793, 1009, 1090
TasI	AATT	8 cut(s)	448, 511, 814, 957, 1080, 1154, 1817, 1825
TatI	WGTACW	9 cut(s)	49, 294, 351, 561, 915, 936, 1403, 1627, 1771
TauI	GCSGC	2 cut(s)	185, 2060
TfiI	GAWTC	4 cut(s)	258, 890, 1169, 1184
Tru1I	TTAA	4 cut(s)	602, 903, 1758, 1926
Tru9I	TTAA	4 cut(s)	602, 903, 1758, 1926
TscAI	CASTG	2 cut(s)	1299, 1882
TseFI	GTSAC	2 cut(s)	160, 495
TseI	GCWGC	3 cut(s)	106, 772, 1355
Tsp45I	GTSAC	2 cut(s)	160, 495
TspDTI	ATGAA	5 cut(s)	434, 646, 1248, 1824, 1887
TspGWI	ACGGA	4 cut(s)	181, 308, 321, 413
TspMI	CCCGGG	1 cut(s)	533
TspRI	CASTG	2 cut(s)	1299, 1882
Tth111I	GACNNNGTC	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	1129, 1435
XapI	RAATTY	4 cut(s)	448, 1080, 1154, 1817
XceI	RCATGY	2 cut(s)	937, 1982
XmaI	CCCGGG	1 cut(s)	533
XmnI	GAANNNNTTC	1 cut(s)	2070
XspI	CTAG	3 cut(s)	1283, 1998, 2061
ZrmI	AGTACT	3 cut(s)	296, 353, 1405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.