Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0021065

Physical Location & Seq

Genomic Coordinates Reverse (-)

47671061 .. 47678056

Gene Structure 6996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG330800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAGACCCGACCGGAGAAGGGACAACCATATCAGAGATGGAGCAGAGCGGGGCTGGGCGACAGAGCCGGAGTGCTGGGCAACTGCGCCGGAGTGCTGGGTAGACTCTGGTCGACGGTATGTTACTGATTCTGGTTATGTGAAGCAACGGCAGTACAACCCCTCAGCTGGCATGTACTCCCTCAATGTTGTTCAAATTAGCAAGGAGGTACAAGCTAATCAACGATTAGGACGAGCTGGAAGGACATGTCCTGGGAAATGCTATCGGTTATATCCATACATCGCTTACCATGAGGAGCTCCTGGATGCAACAGTTCCTGAAATTCAACTTTCTTCACTTGCTGGAAGTGTTCTTTATTTGAAATCTTTGGACCTCCCTGATATTGACATCCTCAAATTCGATTTTCTTGATTCTCCTTCCTGTAAGACAGATTTTTTCTTCTTTTTTCGTTTTTGGTCCTTCTCTTCACTGTTTAGGCATACAATTATTAATCCTTGTAGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

AAA_22 DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

168

Amino Acids

19.57

Weight (kDa)

8.21

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021065)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24140
rosa_multiflora	Rmu_sc0002709.1_g000030
rosa_samantha	Rh3AG330800 Rh3BG366800 Rh4DG307100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	49
AccI	GTMKAC	2 cut(s)	102, 112
AciI	CCGC	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	321, 395
AfaI	GTAC	3 cut(s)	155, 176, 210
AfiI	CCNNNNNNNGG	2 cut(s)	19, 167
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	3 cut(s)	194, 326, 361
AjnI	CCWGG	2 cut(s)	250, 300
AluBI	AGCT	4 cut(s)	167, 215, 236, 298
AluI	AGCT	4 cut(s)	167, 215, 236, 298
Alw21I	GWGCWC	1 cut(s)	300
AlwNI	CAGNNNCTG	1 cut(s)	317
ApoI	RAATTY	2 cut(s)	321, 395
AseI	ATTAAT	1 cut(s)	489
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	2 cut(s)	370, 456
AvaII	GGWCC	2 cut(s)	370, 456
BanII	GRGCYC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	300
BbvCI	CCTCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	2 cut(s)	252, 302
Bme1390I	CCNGG	2 cut(s)	252, 302
Bme18I	GGWCC	2 cut(s)	370, 456
BmgT120I	GGNCC	2 cut(s)	370, 456
BmrFI	CCNGG	2 cut(s)	252, 302
BmsI	GCATC	1 cut(s)	295
BoxI	GACNNNNGTC	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	251
BsaWI	WCCGGW	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 167
BseBI	CCWGG	2 cut(s)	252, 302
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	2 cut(s)	310, 387
BseLI	CCNNNNNNNGG	2 cut(s)	19, 167
BseMII	CTCAG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	308
BseYI	CCCAGC	3 cut(s)	54, 75, 96
Bsh1285I	CGRYCG	1 cut(s)	13
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	3 cut(s)	13, 68, 89
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	19, 167
BsmFI	GGGAC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	300
BspACI	CCGC	1 cut(s)	49
BspCNI	CTCAG	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	251
Bst2UI	CCWGG	2 cut(s)	252, 302
Bst4CI	ACNGT	3 cut(s)	117, 313, 471
Bst6I	CTCTTC	1 cut(s)	469
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	163
BstF5I	GGATG	2 cut(s)	310, 387
BstHHI	GCGC	1 cut(s)	88
BstMCI	CGRYCG	1 cut(s)	13
BstNI	CCWGG	2 cut(s)	252, 302
BstNSI	RCATGY	2 cut(s)	175, 249
BstPAI	GACNNNNGTC	1 cut(s)	108
BstSCI	CCNGG	2 cut(s)	250, 300
BtgZI	GCGATG	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	310, 387
BtsIMutI	CAGTG	1 cut(s)	467
Cac8I	GCNNGC	1 cut(s)	169
CaiI	CAGNNNCTG	1 cut(s)	317
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	370, 456
Csp6I	GTAC	3 cut(s)	154, 175, 209
CviAII	CATG	3 cut(s)	172, 246, 290
CviJI	RGCY	6 cut(s)	54, 67, 167, 215, 236, 298
CviKI_1	RGCY	6 cut(s)	54, 67, 167, 215, 236, 298
CviQI	GTAC	3 cut(s)	154, 175, 209
DdeI	CTNAG	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	469
EarI	CTCTTC	1 cut(s)	469
Ecl136II	GAGCTC	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	300
Eco47I	GGWCC	2 cut(s)	370, 456
Eco53kI	GAGCTC	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	250, 300
EcoT38I	GRGCYC	1 cut(s)	300
FaeI	CATG	3 cut(s)	175, 249, 293
FaiI	YATR	9 cut(s)	30, 120, 138, 173, 247, 271, 277, 291, 480
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	3 cut(s)	171, 245, 289
FauI	CCCGC	1 cut(s)	42
FblI	GTMKAC	2 cut(s)	102, 112
FokI	GGATG	2 cut(s)	317, 374
FriOI	GRGCYC	1 cut(s)	300
GlaI	GCGC	1 cut(s)	87
GsaI	CCCAGC	3 cut(s)	58, 79, 100
HapII	CCGG	3 cut(s)	13, 68, 89
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	3 cut(s)	175, 249, 293
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HincII	GTYRAC	1 cut(s)	113
HindII	GTYRAC	1 cut(s)	113
HinfI	GANTC	3 cut(s)	104, 128, 410
HpaII	CCGG	3 cut(s)	13, 68, 89
Hpy166II	GTNNAC	2 cut(s)	103, 113
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	2 cut(s)	317, 407
Hpy8I	GTNNAC	2 cut(s)	103, 113
Hpy99I	CGWCG	1 cut(s)	117
HpyAV	CCTTC	4 cut(s)	12, 234, 426, 469
HpyCH4III	ACNGT	3 cut(s)	117, 313, 471
HpyCH4V	TGCA	1 cut(s)	308
HpyF3I	CTNAG	1 cut(s)	163
Hsp92II	CATG	3 cut(s)	175, 249, 293
HspAI	GCGC	1 cut(s)	86
LmnI	GCTCC	3 cut(s)	41, 295, 303
LweI	GCATC	1 cut(s)	295
MaeIII	GTNAC	1 cut(s)	121
MbiI	CCGCTC	1 cut(s)	49
MboII	GAAGA	3 cut(s)	324, 430, 456
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	4 cut(s)	195, 321, 395, 483
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	6 cut(s)	172, 191, 199, 286, 383, 401
MseI	TTAA	2 cut(s)	489, 505
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	3 cut(s)	13, 68, 89
MspR9I	CCNGG	2 cut(s)	252, 302
MvaI	CCWGG	2 cut(s)	252, 302
NlaIII	CATG	3 cut(s)	175, 249, 293
NspI	RCATGY	2 cut(s)	175, 249
PciI	ACATGT	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	128, 410
PfoI	TCCNGGA	1 cut(s)	300
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PscI	ACATGT	1 cut(s)	245
PshAI	GACNNNNGTC	1 cut(s)	108
PshBI	ATTAAT	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	300
Psp6I	CCWGG	2 cut(s)	250, 300
PspFI	CCCAGC	3 cut(s)	54, 75, 96
PspGI	CCWGG	2 cut(s)	250, 300
PspPI	GGNCC	2 cut(s)	370, 456
PstNI	CAGNNNCTG	1 cut(s)	317
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	3 cut(s)	155, 176, 210
RsaNI	GTAC	3 cut(s)	154, 175, 209
SacI	GAGCTC	1 cut(s)	300
SalI	GTCGAC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	489, 505
Sau96I	GGNCC	2 cut(s)	370, 456
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	252, 302
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	6 cut(s)	169, 210, 217, 238, 300, 375
SfaNI	GCATC	1 cut(s)	295
SinI	GGWCC	2 cut(s)	370, 456
Sse9I	AATT	4 cut(s)	195, 321, 395, 483
SsiI	CCGC	1 cut(s)	49
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	2 cut(s)	250, 300
TaaI	ACNGT	3 cut(s)	117, 313, 471
TaqI	TCGA	2 cut(s)	112, 399
TasI	AATT	4 cut(s)	195, 321, 395, 483
TatI	WGTACW	2 cut(s)	153, 174
TfiI	GAWTC	2 cut(s)	128, 410
Tru1I	TTAA	2 cut(s)	489, 505
Tru9I	TTAA	2 cut(s)	489, 505
TscAI	CASTG	1 cut(s)	474
TspRI	CASTG	1 cut(s)	474
VpaK11BI	GGWCC	2 cut(s)	370, 456
VspI	ATTAAT	1 cut(s)	489
XapI	RAATTY	2 cut(s)	321, 395
XceI	RCATGY	2 cut(s)	175, 249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35
XmiI	GTMKAC	2 cut(s)	102, 112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.