Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002756.1

Orthogroup ID

OG0021659

Physical Location & Seq

Genomic Coordinates Forward (+)

19298 .. 20865

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgagcaggaaagcggatgtcgaggacgacggccttggcgctatccatgatggtggtggccatgtacctggagtcctgcttgctccattagaggcggaccaagggggtgtcgggatcggaactctcgtagatcatcgcggaatgctccttgtcaggcaggtcgaacactctgacggagccgtcagcggagatggaggcgaagacaccgacgccgaccggttgtctctgttctgcaggtgctttaatggaagaggcttcgaatcggcgtgcctcactgcctcccatgtcaactgtacccatccaataattagccgcgccttcaaaccccagaaacctccgccacccaccttgaagctctcacccccaggagcccagaaccggtggcgaagaccccagaaccggccggaaaatatccgaaccggcccccggaaatacccatatcctctctgcccggttcggagctttcctccctgcctactgctaccaaactctaccagaagctgcaaccagaccctagatcaccggagtcgaaaaatctccactggaaccggccaccaaaaaaaactacaacagaaccggcagaaagaaaagaaaaaaaaaaaggcagcagatcagccaaaccctgcgttcggcccaaaaccaatcagcccaaggtccagaagccgaagtctgaagcccaaaagccttaagtatctgacgtcatctttgcgtcatctgccatgccaacatccacgtcagcctccagtcagcagccacgtcagcaccagtgccacgttagttatccggtcaaccacagtcaacgccggtcaacgaccgccgacgatttttccggccaacttccggccacttttccagccacattccgacgacttttccaggcaactacattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003987 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006083 GO:0008150 GO:0008152 GO:0009507 GO:0009514 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00010 ko00620 ko00640 ko00680 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00620 map00640 map00680 map00720 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

ACAS_N AMP-binding AMP-binding_C

Protein Analysis

296

Amino Acids

32.56

Weight (kDa)

10.29

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021659)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002756.1_g000003
rosa_rugosa	Rorug06G0204000
rosa_samantha	Rh1BG001800 Rh1CG009200 Rh2AG626500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	225
AasI	GACNNNNNNGTC	1 cut(s)	179
AatII	GACGTC	1 cut(s)	701
Acc36I	ACCTGC	2 cut(s)	148, 225
AccII	CGCG	2 cut(s)	138, 315
AciI	CCGC	7 cut(s)	14, 95, 138, 186, 313, 338, 815
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	5 cut(s)	58, 401, 550, 831, 842
AcuI	CTGAAG	1 cut(s)	692
AcyI	GRCGYC	2 cut(s)	210, 698
AfaI	GTAC	2 cut(s)	66, 295
AfiI	CCNNNNNNNGG	5 cut(s)	378, 399, 426, 629, 840
AflII	CTTAAG	1 cut(s)	686
AgeI	ACCGGT	2 cut(s)	216, 378
AgsI	TTSAA	2 cut(s)	322, 352
AhdI	GACNNNNNGTC	1 cut(s)	220
AjiI	CACGTC	2 cut(s)	734, 757
AjnI	CCWGG	3 cut(s)	67, 364, 875
AluBI	AGCT	3 cut(s)	355, 462, 501
AluI	AGCT	3 cut(s)	355, 462, 501
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	501
AoxI	GGCC	8 cut(s)	31, 58, 401, 421, 550, 631, 831, 842
ApeKI	GCWGC	3 cut(s)	501, 605, 750
ArsI	GACNNNNNNTTYG	2 cut(s)	688, 720
AsiGI	ACCGGT	2 cut(s)	216, 378
AspLEI	GCGC	2 cut(s)	41, 317
AspS9I	GGNCC	4 cut(s)	97, 422, 632, 654
AsuC2I	CCSGG	2 cut(s)	427, 452
AsuHPI	GGTGA	2 cut(s)	351, 512
AsuII	TTCGAA	1 cut(s)	258
AvaII	GGWCC	2 cut(s)	97, 654
BalI	TGGCCA	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	373
BbsI	GAAGAC	2 cut(s)	207, 394
BbvI	GCAGC	3 cut(s)	488, 617, 762
BccI	CCATC	3 cut(s)	44, 185, 306
BceAI	ACGGC	2 cut(s)	46, 164
BciT130I	CCWGG	3 cut(s)	69, 366, 877
BcnI	CCSGG	2 cut(s)	427, 452
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	232
BfoI	RGCGCY	1 cut(s)	42
BfrI	CTTAAG	1 cut(s)	686
BfuAI	ACCTGC	2 cut(s)	148, 225
BisI	GCNGC	4 cut(s)	313, 502, 606, 751
BlsI	GCNGC	4 cut(s)	314, 503, 607, 752
Bme1390I	CCNGG	5 cut(s)	69, 366, 427, 452, 877
Bme18I	GGWCC	2 cut(s)	97, 654
BmeRI	GACNNNNNGTC	1 cut(s)	220
BmgBI	CACGTC	2 cut(s)	734, 757
BmgT120I	GGNCC	4 cut(s)	97, 422, 632, 654
BmiI	GGNNCC	4 cut(s)	178, 370, 424, 547
BmrFI	CCNGG	5 cut(s)	69, 366, 427, 452, 877
BpiI	GAAGAC	2 cut(s)	207, 394
BplI	GAGNNNNNCTC	2 cut(s)	451, 483
BpmI	CTGGAG	2 cut(s)	90, 726
Bpu14I	TTCGAA	1 cut(s)	258
BpuMI	CCSGG	2 cut(s)	427, 452
BsaHI	GRCGYC	2 cut(s)	210, 698
BsaJI	CCNNGG	5 cut(s)	34, 100, 364, 425, 650
BsaWI	WCCGGW	4 cut(s)	216, 378, 522, 783
Bsc4I	CCNNNNNNNGG	5 cut(s)	378, 399, 426, 629, 840
Bse118I	RCCGGY	7 cut(s)	216, 378, 399, 419, 548, 576, 803
Bse1I	ACTGG	3 cut(s)	547, 743, 765
BseBI	CCWGG	3 cut(s)	69, 366, 877
BseDI	CCNNGG	5 cut(s)	34, 100, 364, 425, 650
BseGI	GGATG	3 cut(s)	22, 298, 727
BseLI	CCNNNNNNNGG	5 cut(s)	378, 399, 426, 629, 840
BseNI	ACTGG	3 cut(s)	547, 743, 765
BseX3I	CGGCCG	1 cut(s)	401
BseXI	GCAGC	3 cut(s)	488, 617, 762
Bsh1236I	CGCG	2 cut(s)	138, 315
Bsh1285I	CGRYCG	3 cut(s)	217, 404, 815
BshFI	GGCC	8 cut(s)	33, 60, 403, 423, 552, 633, 833, 844
BshTI	ACCGGT	2 cut(s)	216, 378
BsiEI	CGRYCG	3 cut(s)	217, 404, 815
BslI	CCNNNNNNNGG	5 cut(s)	378, 399, 426, 629, 840
BsmAI	GTCTC	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	8 cut(s)	33, 60, 403, 423, 552, 633, 833, 844
Bsp119I	TTCGAA	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	4 cut(s)	114, 130, 517, 610
BspACI	CCGC	7 cut(s)	14, 95, 138, 186, 313, 338, 815
BspANI	GGCC	8 cut(s)	33, 60, 403, 423, 552, 633, 833, 844
BspFNI	CGCG	2 cut(s)	138, 315
BspLI	GGNNCC	4 cut(s)	178, 370, 424, 547
BspMAI	CTGCAG	1 cut(s)	236
BspMI	ACCTGC	2 cut(s)	148, 225
BspPI	GGATC	1 cut(s)	122
BspT104I	TTCGAA	1 cut(s)	258
BspTI	CTTAAG	1 cut(s)	686
BsrFI	RCCGGY	7 cut(s)	216, 378, 399, 419, 548, 576, 803
BsrI	ACTGG	3 cut(s)	547, 743, 765
BssAI	RCCGGY	7 cut(s)	216, 378, 399, 419, 548, 576, 803
BssECI	CCNNGG	5 cut(s)	34, 100, 364, 425, 650
BssMI	GATC	4 cut(s)	114, 130, 517, 610
BssNI	GRCGYC	2 cut(s)	210, 698
BssT1I	CCWWGG	3 cut(s)	34, 100, 650
Bst2UI	CCWGG	3 cut(s)	69, 366, 877
Bst4CI	ACNGT	2 cut(s)	293, 796
Bst6I	CTCTTC	1 cut(s)	244
BstACI	GRCGYC	2 cut(s)	210, 698
BstAFI	CTTAAG	1 cut(s)	686
BstBI	TTCGAA	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	81, 268
BstF5I	GGATG	3 cut(s)	22, 298, 727
BstFNI	CGCG	2 cut(s)	138, 315
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	41, 317
BstKTI	GATC	4 cut(s)	117, 133, 520, 613
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	4 cut(s)	114, 130, 517, 610
BstMCI	CGRYCG	3 cut(s)	217, 404, 815
BstMWI	GCNNNNNNNGC	2 cut(s)	715, 759
BstNI	CCWGG	3 cut(s)	69, 366, 877
BstSCI	CCNGG	5 cut(s)	67, 364, 425, 450, 875
BstSFI	CTRYAG	1 cut(s)	232
BstUI	CGCG	2 cut(s)	138, 315
BstV1I	GCAGC	3 cut(s)	488, 617, 762
BstV2I	GAAGAC	2 cut(s)	207, 394
BstXI	CCANNNNNNTGG	2 cut(s)	53, 68
BstZI	CGGCCG	1 cut(s)	401
BsuRI	GGCC	8 cut(s)	33, 60, 403, 423, 552, 633, 833, 844
BtgZI	GCGATG	1 cut(s)	119
BtrI	CACGTC	2 cut(s)	734, 757
BtsCI	GGATG	3 cut(s)	22, 298, 727
BtsI	GCAGTG	1 cut(s)	273
BtsIMutI	CAGTG	3 cut(s)	273, 540, 772
BveI	ACCTGC	2 cut(s)	148, 225
Cac8I	GCNNGC	2 cut(s)	81, 268
CaiI	CAGNNNCTG	1 cut(s)	501
CfoI	GCGC	2 cut(s)	41, 317
Cfr10I	RCCGGY	7 cut(s)	216, 378, 399, 419, 548, 576, 803
Cfr13I	GGNCC	4 cut(s)	97, 422, 632, 654
CseI	GACGC	2 cut(s)	218, 698
Csp6I	GTAC	2 cut(s)	65, 294
CspAI	ACCGGT	2 cut(s)	216, 378
CspCI	CAANNNNNGTGG	2 cut(s)	330, 365
CviAII	CATG	4 cut(s)	47, 62, 284, 720
CviQI	GTAC	2 cut(s)	65, 294
DpnI	GATC	4 cut(s)	116, 132, 519, 612
DpnII	GATC	4 cut(s)	114, 130, 517, 610
DrdI	GACNNNNNNGTC	1 cut(s)	179
DriI	GACNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	5 cut(s)	58, 401, 550, 831, 842
EagI	CGGCCG	1 cut(s)	401
Eam1104I	CTCTTC	1 cut(s)	244
Eam1105I	GACNNNNNGTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	244
EciI	GGCGGA	2 cut(s)	110, 327
EclXI	CGGCCG	1 cut(s)	401
Eco130I	CCWWGG	3 cut(s)	34, 100, 650
Eco24I	GRGCYC	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	97, 654
Eco52I	CGGCCG	1 cut(s)	401
Eco57I	CTGAAG	1 cut(s)	692
EcoRII	CCWGG	3 cut(s)	67, 364, 875
EcoT14I	CCWWGG	3 cut(s)	34, 100, 650
EcoT38I	GRGCYC	1 cut(s)	373
ErhI	CCWWGG	3 cut(s)	34, 100, 650
FaeI	CATG	4 cut(s)	50, 65, 287, 723
FaiI	YATR	5 cut(s)	48, 63, 285, 439, 721
FatI	CATG	4 cut(s)	46, 61, 283, 719
Fnu4HI	GCNGC	4 cut(s)	313, 502, 606, 751
FokI	GGATG	3 cut(s)	29, 285, 714
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	4 cut(s)	313, 502, 606, 751
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	2 cut(s)	40, 316
GluI	GCNGC	4 cut(s)	313, 502, 606, 751
GsuI	CTGGAG	2 cut(s)	90, 726
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	8 cut(s)	33, 60, 403, 423, 552, 633, 833, 844
HgaI	GACGC	2 cut(s)	218, 698
HhaI	GCGC	2 cut(s)	41, 317
Hin1I	GRCGYC	2 cut(s)	210, 698
Hin1II	CATG	4 cut(s)	50, 65, 287, 723
Hin6I	GCGC	2 cut(s)	39, 315
HinP1I	GCGC	2 cut(s)	39, 315
HincII	GTYRAC	4 cut(s)	289, 789, 799, 809
HindII	GTYRAC	4 cut(s)	289, 789, 799, 809
HinfI	GANTC	3 cut(s)	72, 260, 526
HphI	GGTGA	2 cut(s)	351, 512
Hpy166II	GTNNAC	4 cut(s)	289, 789, 799, 809
Hpy188I	TCNGA	7 cut(s)	119, 172, 416, 459, 672, 696, 865
Hpy188III	TCNNGA	2 cut(s)	112, 657
Hpy8I	GTNNAC	4 cut(s)	289, 789, 799, 809
Hpy99I	CGWCG	4 cut(s)	32, 212, 823, 869
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	2 cut(s)	293, 796
HpyCH4IV	ACGT	4 cut(s)	698, 733, 756, 773
HpyCH4V	TGCA	2 cut(s)	234, 504
HpyF10VI	GCNNNNNNNGC	2 cut(s)	715, 759
HpySE526I	ACGT	4 cut(s)	698, 733, 756, 773
Hsp92I	GRCGYC	2 cut(s)	210, 698
Hsp92II	CATG	4 cut(s)	50, 65, 287, 723
HspAI	GCGC	2 cut(s)	39, 315
Kzo9I	GATC	4 cut(s)	114, 130, 517, 610
LmnI	GCTCC	5 cut(s)	88, 150, 176, 368, 459
Lsp1109I	GCAGC	3 cut(s)	488, 617, 762
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	4 cut(s)	698, 733, 756, 773
MalI	GATC	4 cut(s)	116, 132, 519, 612
MboI	GATC	4 cut(s)	114, 130, 517, 610
MboII	GAAGA	3 cut(s)	212, 261, 399
MhlI	GDGCHC	1 cut(s)	373
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	1 cut(s)	306
MluNI	TGGCCA	1 cut(s)	60
MlyI	GAGTC	2 cut(s)	81, 535
MmeI	TCCRAC	1 cut(s)	888
Mox20I	TGGCCA	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	60
MseI	TTAA	3 cut(s)	243, 687, 889
MslI	CAYNNNNRTG	1 cut(s)	51
Msp20I	TGGCCA	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	186
MspCI	CTTAAG	1 cut(s)	686
MspR9I	CCNGG	5 cut(s)	69, 366, 427, 452, 877
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	3 cut(s)	69, 366, 877
MvnI	CGCG	2 cut(s)	138, 315
MwoI	GCNNNNNNNGC	2 cut(s)	715, 759
NciI	CCSGG	2 cut(s)	427, 452
NdeII	GATC	4 cut(s)	114, 130, 517, 610
NlaIII	CATG	4 cut(s)	50, 65, 287, 723
NlaIV	GGNNCC	4 cut(s)	178, 370, 424, 547
NspV	TTCGAA	1 cut(s)	258
PaqCI	CACCTGC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	260
PinAI	ACCGGT	2 cut(s)	216, 378
PkrI	GCNGC	4 cut(s)	314, 503, 607, 752
PleI	GAGTC	2 cut(s)	80, 534
PpsI	GAGTC	2 cut(s)	80, 534
Psp6I	CCWGG	3 cut(s)	67, 364, 875
PspGI	CCWGG	3 cut(s)	67, 364, 875
PspN4I	GGNNCC	4 cut(s)	178, 370, 424, 547
PspPI	GGNCC	4 cut(s)	97, 422, 632, 654
PstI	CTGCAG	1 cut(s)	236
PstNI	CAGNNNCTG	1 cut(s)	501
RsaI	GTAC	2 cut(s)	66, 295
RsaNI	GTAC	2 cut(s)	65, 294
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	243, 687, 889
SatI	GCNGC	4 cut(s)	313, 502, 606, 751
Sau3AI	GATC	4 cut(s)	114, 130, 517, 610
Sau96I	GGNCC	4 cut(s)	97, 422, 632, 654
SchI	GAGTC	2 cut(s)	81, 535
ScrFI	CCNGG	5 cut(s)	69, 366, 427, 452, 877
SduI	GDGCHC	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	258
SinI	GGWCC	2 cut(s)	97, 654
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	686
SmoI	CTYRAG	1 cut(s)	686
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	7 cut(s)	14, 95, 138, 186, 313, 338, 815
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	5 cut(s)	67, 364, 425, 450, 875
StyI	CCWWGG	3 cut(s)	34, 100, 650
TaaI	ACNGT	2 cut(s)	293, 796
TaiI	ACGT	4 cut(s)	701, 736, 759, 776
TaqI	TCGA	4 cut(s)	21, 162, 258, 529
TasI	AATT	1 cut(s)	306
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	3 cut(s)	243, 687, 889
Tru9I	TTAA	3 cut(s)	243, 687, 889
TscAI	CASTG	3 cut(s)	280, 547, 772
TseI	GCWGC	3 cut(s)	501, 605, 750
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	3 cut(s)	280, 547, 772
Vha464I	CTTAAG	1 cut(s)	686
VpaK11BI	GGWCC	2 cut(s)	97, 654
XcmI	CCANNNNNNNNNTGG	1 cut(s)	53
XspI	CTAG	1 cut(s)	515
ZraI	GACGTC	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.