Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0021659

Physical Location & Seq

Genomic Coordinates Forward (+)

244518 .. 244928

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG001800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGGATCGAGGCCACCCTCGACGGGTTGGCCCATGGAGGAAAGGTCCCAGATGAGGGCCTGTGAGTCGTTCCAGCCGGCTGTGCGGGGCCCAAGCAAAGGCGTTGACGCTGGCCTGGTGCCTCTGCAACTCGACGATCGGATGAGCAGGGAAGCGGATGTCGAGGACGACGACCTTGGCGCTATCCATGATGATGATGGTGGCGTTTGTCTTTGTTCTGCAGGTGGTTTAATGGCTTCGAATCGGCGTGCCTCCCTGTACCCATCCAAAACGAGCCGCGGTTACCTAACCGCGCATGTCGATCAGACGCACCCTAATGACTTGGTGCAGGTGGACCTTGGTCCACAGAAGTCTCTTCGCTACAAACCGATCGATTTTTTTACCGCAACGCTCATAACTATTAGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003987 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006083 GO:0008150 GO:0008152 GO:0009507 GO:0009514 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00010 ko00620 ko00640 ko00680 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00620 map00640 map00680 map00720 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

ACAS_N AMP-binding AMP-binding_C

Protein Analysis

136

Amino Acids

14.76

Weight (kDa)

5.05

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021659)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002756.1_g000003
rosa_rugosa	Rorug06G0204000
rosa_samantha	Rh1BG001800 Rh1CG009200 Rh2AG626500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	409
AarI	CACCTGC	2 cut(s)	212, 319
Acc36I	ACCTGC	2 cut(s)	212, 319
AccB1I	GGYRCC	1 cut(s)	118
AccII	CGCG	2 cut(s)	279, 293
AciI	CCGC	6 cut(s)	85, 155, 277, 279, 291, 384
AclWI	GGATC	1 cut(s)	13
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	4 cut(s)	23, 54, 55, 98
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	1 cut(s)	405
AluI	AGCT	1 cut(s)	405
Alw26I	GTCTC	1 cut(s)	357
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	5 cut(s)	11, 29, 57, 88, 112
ApaI	GGGCCC	1 cut(s)	92
AspLEI	GCGC	2 cut(s)	182, 295
AspS9I	GGNCC	7 cut(s)	30, 45, 57, 88, 89, 334, 341
AsuII	TTCGAA	1 cut(s)	239
AvaII	GGWCC	3 cut(s)	45, 334, 341
BaeGI	GKGCMC	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	92
BccI	CCATC	2 cut(s)	191, 271
BciT130I	CCWGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	183
BfuAI	ACCTGC	2 cut(s)	212, 319
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	3 cut(s)	45, 334, 341
BmgT120I	GGNCC	7 cut(s)	30, 45, 57, 88, 89, 334, 341
BmiI	GGNNCC	4 cut(s)	47, 89, 90, 120
BmrFI	CCNGG	1 cut(s)	116
BoxI	GACNNNNGTC	1 cut(s)	339
Bpu14I	TTCGAA	1 cut(s)	239
Bsa29I	ATCGAT	1 cut(s)	372
BsaJI	CCNNGG	4 cut(s)	33, 175, 277, 337
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 54, 55, 98
Bse118I	RCCGGY	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	116
BseCI	ATCGAT	1 cut(s)	372
BseDI	CCNNGG	4 cut(s)	33, 175, 277, 337
BseGI	GGATG	3 cut(s)	147, 163, 263
BseLI	CCNNNNNNNGG	4 cut(s)	23, 54, 55, 98
BseSI	GKGCMC	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	347
Bsh1236I	CGCG	2 cut(s)	279, 293
Bsh1285I	CGRYCG	2 cut(s)	139, 372
BshFI	GGCC	5 cut(s)	13, 31, 59, 90, 114
BshNI	GGYRCC	1 cut(s)	118
BshVI	ATCGAT	1 cut(s)	372
BsiEI	CGRYCG	2 cut(s)	139, 372
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	4 cut(s)	23, 54, 55, 98
BsmAI	GTCTC	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	5 cut(s)	13, 31, 59, 90, 114
Bsp119I	TTCGAA	1 cut(s)	239
Bsp120I	GGGCCC	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	4 cut(s)	5, 136, 301, 369
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	6 cut(s)	85, 155, 277, 279, 291, 384
BspANI	GGCC	5 cut(s)	13, 31, 59, 90, 114
BspDI	ATCGAT	1 cut(s)	372
BspFNI	CGCG	2 cut(s)	279, 293
BspLI	GGNNCC	4 cut(s)	47, 89, 90, 120
BspMAI	CTGCAG	1 cut(s)	223
BspMI	ACCTGC	2 cut(s)	212, 319
BspPI	GGATC	1 cut(s)	13
BspT104I	TTCGAA	1 cut(s)	239
BspT107I	GGYRCC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	4 cut(s)	33, 175, 277, 337
BssMI	GATC	4 cut(s)	5, 136, 301, 369
BssT1I	CCWWGG	3 cut(s)	33, 175, 337
Bst2UI	CCWGG	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	360
BstBI	TTCGAA	1 cut(s)	239
BstC8I	GCNNGC	3 cut(s)	78, 112, 249
BstDSI	CCRYGG	2 cut(s)	33, 277
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	3 cut(s)	147, 163, 263
BstFNI	CGCG	2 cut(s)	279, 293
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	2 cut(s)	182, 295
BstKTI	GATC	4 cut(s)	8, 139, 304, 372
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	4 cut(s)	5, 136, 301, 369
BstMCI	CGRYCG	2 cut(s)	139, 372
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	299
BstPAI	GACNNNNGTC	1 cut(s)	339
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	219
BstSLI	GKGCMC	1 cut(s)	92
BstUI	CGCG	2 cut(s)	279, 293
Bsu15I	ATCGAT	1 cut(s)	372
BsuRI	GGCC	5 cut(s)	13, 31, 59, 90, 114
BsuTUI	ATCGAT	1 cut(s)	372
BtgI	CCRYGG	2 cut(s)	33, 277
BtsCI	GGATG	3 cut(s)	147, 163, 263
BveI	ACCTGC	2 cut(s)	212, 319
Cac8I	GCNNGC	3 cut(s)	78, 112, 249
CfoI	GCGC	2 cut(s)	182, 295
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	7 cut(s)	30, 45, 57, 88, 89, 334, 341
Cfr42I	CCGCGG	1 cut(s)	280
ClaI	ATCGAT	1 cut(s)	372
CseI	GACGC	2 cut(s)	116, 316
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	3 cut(s)	34, 188, 296
CviQI	GTAC	1 cut(s)	259
DpnI	GATC	4 cut(s)	7, 138, 303, 371
DpnII	GATC	4 cut(s)	5, 136, 301, 369
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	3 cut(s)	33, 175, 337
Eco24I	GRGCYC	1 cut(s)	92
Eco47I	GGWCC	3 cut(s)	45, 334, 341
Eco91I	GGTNACC	1 cut(s)	281
EcoO109I	RGGNCCY	3 cut(s)	45, 57, 88
EcoO65I	GGTNACC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	3 cut(s)	33, 175, 337
EcoT38I	GRGCYC	1 cut(s)	92
ErhI	CCWWGG	3 cut(s)	33, 175, 337
FaeI	CATG	3 cut(s)	37, 191, 299
FaiI	YATR	5 cut(s)	35, 189, 297, 395, 409
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	3 cut(s)	33, 187, 295
FauI	CCCGC	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	3 cut(s)	154, 170, 250
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	277
GlaI	GCGC	2 cut(s)	181, 294
GluI	GCNGC	1 cut(s)	277
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	5 cut(s)	13, 31, 59, 90, 114
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	2 cut(s)	116, 316
HhaI	GCGC	2 cut(s)	182, 295
Hin1II	CATG	3 cut(s)	37, 191, 299
Hin6I	GCGC	2 cut(s)	180, 293
HinP1I	GCGC	2 cut(s)	180, 293
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	2 cut(s)	65, 241
HpaII	CCGG	1 cut(s)	77
Hpy166II	GTNNAC	3 cut(s)	106, 334, 344
Hpy188I	TCNGA	2 cut(s)	141, 306
Hpy8I	GTNNAC	3 cut(s)	106, 334, 344
Hpy99I	CGWCG	3 cut(s)	25, 137, 173
HpyCH4V	TGCA	3 cut(s)	127, 221, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
Hsp92II	CATG	3 cut(s)	37, 191, 299
HspAI	GCGC	2 cut(s)	180, 293
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
KspI	CCGCGG	1 cut(s)	280
Kzo9I	GATC	4 cut(s)	5, 136, 301, 369
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	4 cut(s)	7, 138, 303, 371
MboI	GATC	4 cut(s)	5, 136, 301, 369
MboII	GAAGA	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	7 cut(s)	3, 28, 31, 48, 132, 157, 262
MroNI	GCCGGC	1 cut(s)	76
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	2 cut(s)	192, 315
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	2 cut(s)	279, 293
MwoI	GCNNNNNNNGC	1 cut(s)	82
NaeI	GCCGGC	1 cut(s)	78
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	4 cut(s)	5, 136, 301, 369
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	3 cut(s)	37, 191, 299
NlaIV	GGNNCC	4 cut(s)	47, 89, 90, 120
NspI	RCATGY	1 cut(s)	299
NspV	TTCGAA	1 cut(s)	239
PaqCI	CACCTGC	2 cut(s)	212, 319
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PdiI	GCCGGC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	278
Ple19I	CGATCG	2 cut(s)	139, 372
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PpuMI	RGGWCCY	1 cut(s)	45
PshAI	GACNNNNGTC	1 cut(s)	339
PsiI	TTATAA	1 cut(s)	409
Psp5II	RGGWCCY	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	114
PspEI	GGTNACC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	4 cut(s)	47, 89, 90, 120
PspOMI	GGGCCC	1 cut(s)	88
PspPI	GGNCC	7 cut(s)	30, 45, 57, 88, 89, 334, 341
PspPPI	RGGWCCY	1 cut(s)	45
PstI	CTGCAG	1 cut(s)	223
PvuI	CGATCG	2 cut(s)	139, 372
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	2 cut(s)	192, 315
SacII	CCGCGG	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	4 cut(s)	5, 136, 301, 369
Sau96I	GGNCC	7 cut(s)	30, 45, 57, 88, 89, 334, 341
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	7 cut(s)	47, 177, 226, 288, 333, 339, 407
SfcI	CTRYAG	1 cut(s)	219
Sfr303I	CCGCGG	1 cut(s)	280
SfuI	TTCGAA	1 cut(s)	239
SgrBI	CCGCGG	1 cut(s)	280
SinI	GGWCC	3 cut(s)	45, 334, 341
SmiMI	CAYNNNNRTG	2 cut(s)	192, 315
SsiI	CCGC	6 cut(s)	85, 155, 277, 279, 291, 384
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	3 cut(s)	33, 175, 337
TaqI	TCGA	7 cut(s)	8, 20, 132, 162, 239, 300, 372
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
VpaK11BI	GGWCC	3 cut(s)	45, 334, 341
XceI	RCATGY	1 cut(s)	299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.