Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0021659

Physical Location & Seq

Genomic Coordinates Forward (+)

1381366 .. 1381588

Gene Structure 223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG009200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 223 bp

ATGGGATCGAGGCCACCCTCGACGGGTTGGCCCATGGAGGAAAGGTCCCAGATGAGGGCCTGTGAGTCGTTCCAGCCGGCTGTGCGGGGCCCAAGCAAAGGCGTTGACGCTGGCCTGGTGCCTCTGCAACTCGACGATCGGATGAGCAGGGAAGCGGATGTCGAGGACGACGACCTTGGCGCTATCCATGATGATGATGGTGGCGTTTGTCTTTGTTCTGCAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003987 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006083 GO:0008150 GO:0008152 GO:0009507 GO:0009514 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00010 ko00620 ko00640 ko00680 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00620 map00640 map00680 map00720 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

ACAS_N AMP-binding AMP-binding_C

Protein Analysis

74

Amino Acids

7.92

Weight (kDa)

4.26

Isoelectric Point (pI)

64.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021659)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002756.1_g000003
rosa_rugosa	Rorug06G0204000
rosa_samantha	Rh1BG001800 Rh1CG009200 Rh2AG626500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	118
AciI	CCGC	2 cut(s)	85, 155
AclWI	GGATC	1 cut(s)	13
AfiI	CCNNNNNNNGG	4 cut(s)	23, 54, 55, 98
AjnI	CCWGG	1 cut(s)	114
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	5 cut(s)	11, 29, 57, 88, 112
ApaI	GGGCCC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	5 cut(s)	30, 45, 57, 88, 89
AvaII	GGWCC	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	118
BanII	GRGCYC	1 cut(s)	92
BccI	CCATC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	183
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	45
BmgT120I	GGNCC	5 cut(s)	30, 45, 57, 88, 89
BmiI	GGNNCC	4 cut(s)	47, 89, 90, 120
BmrFI	CCNGG	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	33, 175
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 54, 55, 98
Bse118I	RCCGGY	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	33, 175
BseGI	GGATG	2 cut(s)	147, 163
BseLI	CCNNNNNNNGG	4 cut(s)	23, 54, 55, 98
BseSI	GKGCMC	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	5 cut(s)	13, 31, 59, 90, 114
BshNI	GGYRCC	1 cut(s)	118
BsiEI	CGRYCG	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	4 cut(s)	23, 54, 55, 98
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	5 cut(s)	13, 31, 59, 90, 114
Bsp120I	GGGCCC	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	5, 136
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	2 cut(s)	85, 155
BspANI	GGCC	5 cut(s)	13, 31, 59, 90, 114
BspLI	GGNNCC	4 cut(s)	47, 89, 90, 120
BspMAI	CTGCAG	1 cut(s)	223
BspPI	GGATC	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	33, 175
BssMI	GATC	2 cut(s)	5, 136
BssT1I	CCWWGG	2 cut(s)	33, 175
Bst2UI	CCWGG	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	78, 112
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	147, 163
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	2 cut(s)	8, 139
BstMBI	GATC	2 cut(s)	5, 136
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	219
BstSLI	GKGCMC	1 cut(s)	92
BsuRI	GGCC	5 cut(s)	13, 31, 59, 90, 114
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	147, 163
Cac8I	GCNNGC	2 cut(s)	78, 112
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	5 cut(s)	30, 45, 57, 88, 89
CseI	GACGC	1 cut(s)	116
CviAII	CATG	2 cut(s)	34, 188
CviJI	RGCY	7 cut(s)	13, 31, 59, 76, 80, 90, 114
CviKI_1	RGCY	7 cut(s)	13, 31, 59, 76, 80, 90, 114
DpnI	GATC	2 cut(s)	7, 138
DpnII	GATC	2 cut(s)	5, 136
Eco130I	CCWWGG	2 cut(s)	33, 175
Eco24I	GRGCYC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	45
EcoO109I	RGGNCCY	3 cut(s)	45, 57, 88
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	2 cut(s)	33, 175
EcoT38I	GRGCYC	1 cut(s)	92
ErhI	CCWWGG	2 cut(s)	33, 175
FaeI	CATG	2 cut(s)	37, 191
FaiI	YATR	2 cut(s)	35, 189
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	2 cut(s)	33, 187
FauI	CCCGC	1 cut(s)	78
FokI	GGATG	2 cut(s)	154, 170
FriOI	GRGCYC	1 cut(s)	92
GlaI	GCGC	1 cut(s)	181
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	5 cut(s)	13, 31, 59, 90, 114
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	37, 191
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	141
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	3 cut(s)	25, 137, 173
HpyCH4V	TGCA	2 cut(s)	127, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
Hsp92II	CATG	2 cut(s)	37, 191
HspAI	GCGC	1 cut(s)	180
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	5, 136
LpnPI	CCDG	8 cut(s)	62, 73, 86, 90, 96, 101, 128, 133
MalI	GATC	2 cut(s)	7, 138
MboI	GATC	2 cut(s)	5, 136
MhlI	GDGCHC	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	6 cut(s)	3, 28, 31, 48, 132, 157
MroNI	GCCGGC	1 cut(s)	76
MslI	CAYNNNNRTG	1 cut(s)	192
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	82
NaeI	GCCGGC	1 cut(s)	78
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	2 cut(s)	5, 136
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	37, 191
NlaIV	GGNNCC	4 cut(s)	47, 89, 90, 120
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PdiI	GCCGGC	1 cut(s)	78
Ple19I	CGATCG	1 cut(s)	139
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PpuMI	RGGWCCY	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	4 cut(s)	47, 89, 90, 120
PspOMI	GGGCCC	1 cut(s)	88
PspPI	GGNCC	5 cut(s)	30, 45, 57, 88, 89
PspPPI	RGGWCCY	1 cut(s)	45
PstI	CTGCAG	1 cut(s)	223
PvuI	CGATCG	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	5, 136
Sau96I	GGNCC	5 cut(s)	30, 45, 57, 88, 89
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	2 cut(s)	47, 177
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	192
SsiI	CCGC	2 cut(s)	85, 155
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	2 cut(s)	33, 175
TaqI	TCGA	4 cut(s)	8, 20, 132, 162
VpaK11BI	GGWCC	1 cut(s)	45
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.