Rorug06G0204000

acetate--CoA ligase ACS, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
32598303 .. 32601844
3542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0204000.1

Sequence Viewer

Length: 1392 bp
ATGGTCATGGAGGGGGGAGAGTACAGTGGGACTAATGACTCTGAACTGAGAGCAAGTGTATCGATCGATGTGACAAGAAGTGCCAGTTCTTCATTAAGGTGGCGCTCTTTAAGTTCATTAGGTGCTCATACCTCTCAAGTAGATGAAGGAAGTGAGAGTGTGTCAGAGGTGGGAGATATTGGGGATCGAGCTCTTCACAGCAACAGGTACAGTGTGAGTGGCAGTTTCAACTTCTCGTCTGCAGAGGATATTCAATTGCAATCCTATGGATTCTGGCGTCATGATCCTGCTGCATCCCATGCAATCTCCACAGTGTCGCGTTTGCCAGAGGGAATCATTTCTCCCCTGTCTATTGATGCCATAGTACGCGATGAGGAGAAAAACCAAGCAAGTACAGAAAGAATACCAAAATTGTTGGAGTATGGTTCATGTATGACTCATCTAGCCTTCTTTGGCATTCTTGGGGTCTTAACGAGATATCTACTGCAAAAATTGTTCGGCCCCGGAGTTGCTGGAGTGACAAGTGACCAAACAATTCTTTACCTTGATCTTCCTTCTAATATGGTTGGCTCTTTCTTGATGGGGTGGTGCGGTGTTGTTTTTAAAGCAGATATATCATATAGGTCAGATTTTTTGGCAATTGGATTGACAACAGGTTACCTGGGAAGTGTTACAACTTTTAGTGGTTGGAACCAGAAAATGCTTGAACTGAGTGTCGAAGGCCATTGGGTTTTTGCTGGTCTCGGTTTTTTAATAGGTTTGTTTCTTGCTGCCTACTCCATCATTTTTGGGGTAGAAACATCCAAGTGTTTTAGGCAGCTGCTTGTAAGGAATTCAGGGTATGGTGTTGCTAGCTCTAGAAAGAGCTGGAGGGTTGACAGCCACAAGCGTCACTTGGCAGTTTTGGCAGTGTTTCTGCTGTTGCTAGCTGGATTATGGACTATGAGTGGAATATTGATGAGGCAGGAGTTTAACAGCAACAGCAGTGAGACACAACTATGGTTGGCTTGCATCGTTGGACCTCTAGGAGTCTGGGTCAGGTGGTTCTTAGCTCGACTAAATGGACGTGGATTGGGAAAGACAGGGTTGTTAAAATGGGTTCCATTTGGTACTCTAATTGCCAATGTTTCTGCAGCTTGTATTATGGCGGCACTTGCTACTGTAAAGAGAGAGGTAAATACCAAGACTTGCGATATTGTTGCAACAGGCATACAATTTGGATTTTTGGGTTGCCTGAGTACTGTATCTACATTCATTGCCGAGTTTAATGCAATGAGAGAAAGTAAATACCCCTGGAGAGCATACATCTACGCCACAGTCACCATATGCACCTCATTTTGTTTAGGGACCCTGATATATTCTGTACCTGTTTGGGCAAAGGGAGACAACTAA

Protein Analysis

463

Amino Acids

50.58

Weight (kDa)

8.03

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRCB PF02537 148 - 265 8.8e-14 CrcB-like protein, Camphor Resistance (CrcB)
CRCB PF02537 335 - 448 3.4e-17 CrcB-like protein, Camphor Resistance (CrcB)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021659)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002756.1_g000003
rosa_rugosa Rorug06G0204000
rosa_samantha Rh1BG001800 Rh1CG009200 Rh2AG626500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 319, 369
AciI CCGC 2 cut(s) 591, 1148
AclWI GGATC 2 cut(s) 192, 278
AcsI RAATTY 1 cut(s) 832
AcyI GRCGYC 1 cut(s) 277
AfaI GTAC 7 cut(s) 23, 209, 366, 394, 1111, 1240, 1365
AgsI TTSAA 3 cut(s) 229, 254, 707
AjiI CACGTC 1 cut(s) 1067
AjnI CCWGG 2 cut(s) 660, 1292
AluBI AGCT 7 cut(s) 191, 820, 855, 867, 929, 1052, 1136
AluI AGCT 7 cut(s) 191, 820, 855, 867, 929, 1052, 1136
Alw21I GWGCWC 2 cut(s) 127, 193
Alw26I GTCTC 3 cut(s) 746, 983, 1377
AlwI GGATC 2 cut(s) 192, 278
AoxI GGCC 2 cut(s) 499, 721
ApeKI GCWGC 5 cut(s) 290, 770, 817, 820, 1133
ApoI RAATTY 1 cut(s) 832
Asp700I GAANNNNTTC 1 cut(s) 337
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 3 cut(s) 500, 1019, 1347
AsuC2I CCSGG 1 cut(s) 504
AsuHPI GGTGA 1 cut(s) 1312
AsuNHI GCTAGC 2 cut(s) 851, 925
AvaII GGWCC 2 cut(s) 1019, 1347
BanII GRGCYC 1 cut(s) 193
Bbv12I GWGCWC 2 cut(s) 127, 193
BbvI GCAGC 5 cut(s) 277, 757, 807, 829, 1145
BccI CCATC 2 cut(s) 574, 788
BcgI CGANNNNNNTGC 6 cut(s) 42, 76, 1181, 1215, 1250, 1284
BciT130I CCWGG 2 cut(s) 662, 1294
BcnI CCSGG 1 cut(s) 504
BcoDI GTCTC 3 cut(s) 746, 983, 1377
BfaI CTAG 5 cut(s) 443, 852, 858, 926, 1025
BfmI CTRYAG 2 cut(s) 240, 1131
BfoI RGCGCY 1 cut(s) 106
BisI GCNGC 6 cut(s) 291, 771, 818, 821, 1134, 1149
BlsI GCNGC 6 cut(s) 292, 772, 819, 822, 1135, 1150
BmcAI AGTACT 1 cut(s) 1240
Bme1390I CCNGG 3 cut(s) 504, 662, 1294
Bme18I GGWCC 2 cut(s) 1019, 1347
BmgBI CACGTC 1 cut(s) 1067
BmgT120I GGNCC 3 cut(s) 500, 1019, 1347
BmiI GGNNCC 5 cut(s) 502, 692, 1101, 1348, 1349
BmrFI CCNGG 3 cut(s) 504, 662, 1294
BmsI GCATC 3 cut(s) 302, 346, 1020
BmtI GCTAGC 2 cut(s) 855, 929
BpmI CTGGAG 3 cut(s) 534, 889, 1315
BpuEI CTTGAG 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 504
Bsa29I ATCGAT 2 cut(s) 62, 66
BsaHI GRCGYC 1 cut(s) 277
BsaI GGTCTC 1 cut(s) 746
BsaJI CCNNGG 3 cut(s) 502, 661, 1292
BsaXI ACNNNNNCTCC 2 cut(s) 1020, 1050
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 2 cut(s) 1254, 1278
BseBI CCWGG 2 cut(s) 662, 1294
BseCI ATCGAT 2 cut(s) 62, 66
BseDI CCNNGG 3 cut(s) 502, 661, 1292
BseGI GGATG 2 cut(s) 293, 800
BseMI GCAATG 2 cut(s) 1254, 1278
BseMII CTCAG 3 cut(s) 38, 701, 1226
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 5 cut(s) 277, 757, 807, 829, 1145
Bsh1236I CGCG 2 cut(s) 319, 369
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 501, 723
BshVI ATCGAT 2 cut(s) 62, 66
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 2 cut(s) 127, 193
BsiSI CCGG 1 cut(s) 504
BslFI GGGAC 2 cut(s) 43, 1360
BsmAI GTCTC 3 cut(s) 746, 983, 1377
BsmFI GGGAC 2 cut(s) 43, 1360
BsmI GAATGC 1 cut(s) 456
BsnI GGCC 2 cut(s) 501, 723
Bso31I GGTCTC 1 cut(s) 746
Bsp1286I GDGCHC 2 cut(s) 127, 193
Bsp143I GATC 4 cut(s) 63, 184, 283, 547
BspACI CCGC 2 cut(s) 591, 1148
BspANI GGCC 2 cut(s) 501, 723
BspCNI CTCAG 3 cut(s) 39, 702, 1227
BspDI ATCGAT 2 cut(s) 62, 66
BspFNI CGCG 2 cut(s) 319, 369
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 5 cut(s) 502, 692, 1101, 1348, 1349
BspMAI CTGCAG 2 cut(s) 244, 1135
BspOI GCTAGC 2 cut(s) 855, 929
BspPI GGATC 2 cut(s) 192, 278
BspQI GCTCTTC 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 746
BsrDI GCAATG 2 cut(s) 1254, 1278
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 3 cut(s) 502, 661, 1292
BssMI GATC 4 cut(s) 63, 184, 283, 547
BssNI GRCGYC 1 cut(s) 277
Bst2UI CCWGG 2 cut(s) 662, 1294
Bst4CI ACNGT 6 cut(s) 26, 212, 313, 1162, 1243, 1318
Bst6I CTCTTC 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 277
BstAPI GCANNNNNTGC 1 cut(s) 299
BstC8I GCNNGC 3 cut(s) 853, 927, 1009
BstDEI CTNAG 4 cut(s) 47, 710, 1048, 1235
BstEII GGTNACC 1 cut(s) 656
BstF5I GGATG 2 cut(s) 293, 800
BstFNI CGCG 2 cut(s) 319, 369
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 4 cut(s) 66, 187, 286, 550
BstMAI GTCTC 3 cut(s) 746, 983, 1377
BstMBI GATC 4 cut(s) 63, 184, 283, 547
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 299, 905, 1154
BstNI CCWGG 2 cut(s) 662, 1294
BstPI GGTNACC 1 cut(s) 656
BstSCI CCNGG 3 cut(s) 502, 660, 1292
BstSFI CTRYAG 2 cut(s) 240, 1131
BstUI CGCG 2 cut(s) 319, 369
BstV1I GCAGC 5 cut(s) 277, 757, 807, 829, 1145
Bsu15I ATCGAT 2 cut(s) 62, 66
BsuRI GGCC 2 cut(s) 501, 723
BsuTUI ATCGAT 2 cut(s) 62, 66
BtgZI GCGATG 1 cut(s) 384
BtrI CACGTC 1 cut(s) 1067
BtsCI GGATG 2 cut(s) 293, 800
BtsI GCAGTG 2 cut(s) 915, 991
BtsIMutI CAGTG 5 cut(s) 31, 217, 318, 915, 991
Cac8I GCNNGC 3 cut(s) 853, 927, 1009
CciI TCATGA 1 cut(s) 280
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 3 cut(s) 500, 1019, 1347
ClaI ATCGAT 2 cut(s) 62, 66
CseI GACGC 2 cut(s) 266, 878
Csp6I GTAC 7 cut(s) 22, 208, 365, 393, 1110, 1239, 1364
CviAII CATG 4 cut(s) 7, 281, 299, 429
CviQI GTAC 7 cut(s) 22, 208, 365, 393, 1110, 1239, 1364
DdeI CTNAG 4 cut(s) 47, 710, 1048, 1235
DpnI GATC 4 cut(s) 65, 186, 285, 549
DpnII GATC 4 cut(s) 63, 184, 283, 547
DraI TTTAAA 1 cut(s) 604
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 746
Eco32I GATATC 1 cut(s) 479
Eco47I GGWCC 2 cut(s) 1019, 1347
Eco53kI GAGCTC 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 656
EcoICRI GAGCTC 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 1347
EcoO65I GGTNACC 1 cut(s) 656
EcoRI GAATTC 1 cut(s) 832
EcoRII CCWGG 2 cut(s) 660, 1292
EcoRV GATATC 1 cut(s) 479
EcoT38I GRGCYC 1 cut(s) 193
FaeI CATG 4 cut(s) 10, 284, 302, 432
FalI AAGNNNNNCTT 2 cut(s) 878, 910
FaqI GGGAC 2 cut(s) 43, 1360
FatI CATG 4 cut(s) 6, 280, 298, 428
FauNDI CATATG 1 cut(s) 1325
Fnu4HI GCNGC 6 cut(s) 291, 771, 818, 821, 1134, 1149
FokI GGATG 2 cut(s) 280, 787
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 6 cut(s) 291, 771, 818, 821, 1134, 1149
FspBI CTAG 5 cut(s) 443, 852, 858, 926, 1025
GlaI GCGC 1 cut(s) 104
GluI GCNGC 6 cut(s) 291, 771, 818, 821, 1134, 1149
GsuI CTGGAG 3 cut(s) 534, 889, 1315
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 2 cut(s) 501, 723
HapII CCGG 1 cut(s) 504
HgaI GACGC 2 cut(s) 266, 878
HhaI GCGC 1 cut(s) 105
Hin1I GRCGYC 1 cut(s) 277
Hin1II CATG 4 cut(s) 10, 284, 302, 432
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 877
HindII GTYRAC 1 cut(s) 877
HinfI GANTC 5 cut(s) 38, 270, 333, 436, 1029
HpaII CCGG 1 cut(s) 504
HphI GGTGA 1 cut(s) 1312
Hpy166II GTNNAC 1 cut(s) 877
Hpy188I TCNGA 3 cut(s) 43, 166, 628
Hpy188III TCNNGA 3 cut(s) 281, 577, 858
Hpy8I GTNNAC 1 cut(s) 877
HpyAV CCTTC 4 cut(s) 140, 457, 564, 713
HpyCH4III ACNGT 6 cut(s) 26, 212, 313, 1162, 1243, 1318
HpyCH4IV ACGT 1 cut(s) 1066
HpyF10VI GCNNNNNNNGC 3 cut(s) 299, 905, 1154
HpyF3I CTNAG 4 cut(s) 47, 710, 1048, 1235
HpySE526I ACGT 1 cut(s) 1066
Hsp92I GRCGYC 1 cut(s) 277
Hsp92II CATG 4 cut(s) 10, 284, 302, 432
HspAI GCGC 1 cut(s) 103
KflI GGGWCCC 1 cut(s) 1347
Kzo9I GATC 4 cut(s) 63, 184, 283, 547
LguI GCTCTTC 1 cut(s) 198
Lsp1109I GCAGC 5 cut(s) 277, 757, 807, 829, 1145
LweI GCATC 3 cut(s) 302, 346, 1020
MaeI CTAG 5 cut(s) 443, 852, 858, 926, 1025
MaeII ACGT 1 cut(s) 1066
MaeIII GTNAC 7 cut(s) 70, 517, 524, 656, 670, 890, 1318
MalI GATC 4 cut(s) 65, 186, 285, 549
MboI GATC 4 cut(s) 63, 184, 283, 547
MboII GAAGA 3 cut(s) 81, 185, 542
MfeI CAATTG 2 cut(s) 254, 639
MhlI GDGCHC 2 cut(s) 127, 193
MluCI AATT 8 cut(s) 254, 410, 491, 534, 639, 832, 1116, 1214
MlyI GAGTC 3 cut(s) 32, 430, 1038
MmeI TCCRAC 3 cut(s) 396, 668, 997
MroXI GAANNNNTTC 1 cut(s) 337
MseI TTAA 8 cut(s) 95, 110, 470, 603, 752, 972, 1091, 1266
MslI CAYNNNNRTG 3 cut(s) 97, 805, 997
MspA1I CMGCKG 1 cut(s) 820
MspI CCGG 1 cut(s) 504
MspR9I CCNGG 3 cut(s) 504, 662, 1294
MunI CAATTG 2 cut(s) 254, 639
Mva1269I GAATGC 1 cut(s) 456
MvaI CCWGG 2 cut(s) 662, 1294
MvnI CGCG 2 cut(s) 319, 369
MwoI GCNNNNNNNGC 3 cut(s) 299, 905, 1154
NciI CCSGG 1 cut(s) 504
NdeI CATATG 1 cut(s) 1325
NdeII GATC 4 cut(s) 63, 184, 283, 547
NheI GCTAGC 2 cut(s) 851, 925
NlaIII CATG 4 cut(s) 10, 284, 302, 432
NlaIV GGNNCC 5 cut(s) 502, 692, 1101, 1348, 1349
NmeAIII GCCGAG 1 cut(s) 1285
NmuCI GTSAC 5 cut(s) 70, 517, 524, 890, 1318
PagI TCATGA 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 198
PctI GAATGC 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 337
PfeI GAWTC 2 cut(s) 270, 333
PkrI GCNGC 6 cut(s) 292, 772, 819, 822, 1135, 1150
Ple19I CGATCG 1 cut(s) 66
PleI GAGTC 3 cut(s) 32, 430, 1037
PpsI GAGTC 3 cut(s) 32, 430, 1037
PpuMI RGGWCCY 1 cut(s) 1347
Psp124BI GAGCTC 1 cut(s) 193
Psp5II RGGWCCY 1 cut(s) 1347
Psp6I CCWGG 2 cut(s) 660, 1292
PspEI GGTNACC 1 cut(s) 656
PspGI CCWGG 2 cut(s) 660, 1292
PspN4I GGNNCC 5 cut(s) 502, 692, 1101, 1348, 1349
PspPI GGNCC 3 cut(s) 500, 1019, 1347
PspPPI RGGWCCY 1 cut(s) 1347
PstI CTGCAG 2 cut(s) 244, 1135
PvuI CGATCG 1 cut(s) 66
PvuII CAGCTG 1 cut(s) 820
RsaI GTAC 7 cut(s) 23, 209, 366, 394, 1111, 1240, 1365
RsaNI GTAC 7 cut(s) 22, 208, 365, 393, 1110, 1239, 1364
RseI CAYNNNNRTG 3 cut(s) 97, 805, 997
SacI GAGCTC 1 cut(s) 193
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 8 cut(s) 95, 110, 470, 603, 752, 972, 1091, 1266
SatI GCNGC 6 cut(s) 291, 771, 818, 821, 1134, 1149
Sau3AI GATC 4 cut(s) 63, 184, 283, 547
Sau96I GGNCC 3 cut(s) 500, 1019, 1347
ScaI AGTACT 1 cut(s) 1240
SchI GAGTC 3 cut(s) 32, 430, 1038
ScrFI CCNGG 3 cut(s) 504, 662, 1294
SduI GDGCHC 2 cut(s) 127, 193
SfaNI GCATC 3 cut(s) 302, 346, 1020
SfcI CTRYAG 2 cut(s) 240, 1131
SinI GGWCC 2 cut(s) 1019, 1347
SmiMI CAYNNNNRTG 3 cut(s) 97, 805, 997
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
Sse9I AATT 8 cut(s) 254, 410, 491, 534, 639, 832, 1116, 1214
SsiI CCGC 2 cut(s) 591, 1148
SspI AATATT 1 cut(s) 954
SspMI CTAG 5 cut(s) 443, 852, 858, 926, 1025
SstI GAGCTC 1 cut(s) 193
StyD4I CCNGG 3 cut(s) 502, 660, 1292
TaaI ACNGT 6 cut(s) 26, 212, 313, 1162, 1243, 1318
TaiI ACGT 1 cut(s) 1069
TaqI TCGA 5 cut(s) 62, 66, 187, 717, 1054
TasI AATT 8 cut(s) 254, 410, 491, 534, 639, 832, 1116, 1214
TatI WGTACW 3 cut(s) 21, 392, 1238
TauI GCSGC 1 cut(s) 1151
TfiI GAWTC 2 cut(s) 270, 333
Tru1I TTAA 8 cut(s) 95, 110, 470, 603, 752, 972, 1091, 1266
Tru9I TTAA 8 cut(s) 95, 110, 470, 603, 752, 972, 1091, 1266
TscAI CASTG 5 cut(s) 31, 217, 318, 915, 991
TseFI GTSAC 5 cut(s) 70, 517, 524, 890, 1318
TseI GCWGC 5 cut(s) 290, 770, 817, 820, 1133
Tsp45I GTSAC 5 cut(s) 70, 517, 524, 890, 1318
TspDTI ATGAA 5 cut(s) 81, 105, 159, 417, 1243
TspRI CASTG 5 cut(s) 31, 217, 318, 915, 991
VpaK11BI GGWCC 2 cut(s) 1019, 1347
XapI RAATTY 1 cut(s) 832
XbaI TCTAGA 1 cut(s) 857
XmnI GAANNNNTTC 1 cut(s) 337
XspI CTAG 5 cut(s) 443, 852, 858, 926, 1025
ZrmI AGTACT 1 cut(s) 1240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.