Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002833.1

Orthogroup ID

OG0023090

Physical Location & Seq

Genomic Coordinates Reverse (-)

89251 .. 89562

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002833.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgggtatttgctgtgtgacccctccccaaaacgggttcgctcttaaagaacaagaagaacaggccgaacccatttgccatagactacgccgtcaccatggcggcagcaagctccgtgtcttgaaagacccgaccggcaccgaaatcgggcagacatatgaactcggccgcggagaattcggaatcacctacctctgtactgaccaggtcaccagcgacaagttcgcttgcaaatcgatttcgaagcagaagctgcggacgaccgtggacatcgaggatgtaaggagggaggttgcatatgttctgctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004697 GO:0004698 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

103

Amino Acids

11.61

Weight (kDa)

7.64

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023090)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002833.1_g000021
rosa_roxburghii	Rroxscaffold_1G00027610 Rroxscaffold_1G00028710 Rroxscaffold_6G00394080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	137
AccII	CGCG	1 cut(s)	171
AciI	CCGC	4 cut(s)	102, 169, 171, 256
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	176
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	3 cut(s)	32, 33, 147
AgsI	TTSAA	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	2 cut(s)	112, 253
AluI	AGCT	2 cut(s)	112, 253
AlwNI	CAGNNNCTG	1 cut(s)	253
AoxI	GGCC	2 cut(s)	63, 166
ApeKI	GCWGC	2 cut(s)	105, 253
ApoI	RAATTY	1 cut(s)	176
AsuHPI	GGTGA	3 cut(s)	86, 178, 202
AsuII	TTCGAA	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	117, 240
BceAI	ACGGC	1 cut(s)	75
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	1 cut(s)	206
BfaI	CTAG	1 cut(s)	310
BisI	GCNGC	4 cut(s)	103, 106, 169, 254
BlsI	GCNGC	4 cut(s)	104, 107, 170, 255
Bme1390I	CCNGG	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	97, 169, 264
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 33, 147
Bse118I	RCCGGY	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	206
BseCI	ATCGAT	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	97, 169, 264
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	3 cut(s)	32, 33, 147
BseX3I	CGGCCG	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	117, 240
Bsh1236I	CGCG	1 cut(s)	171
Bsh1285I	CGRYCG	3 cut(s)	135, 169, 264
BshFI	GGCC	2 cut(s)	65, 168
BshNI	GGYRCC	1 cut(s)	137
BshVI	ATCGAT	1 cut(s)	236
BsiEI	CGRYCG	3 cut(s)	135, 169, 264
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	3 cut(s)	32, 33, 147
BsnI	GGCC	2 cut(s)	65, 168
Bsp119I	TTCGAA	1 cut(s)	242
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	4 cut(s)	102, 169, 171, 256
BspANI	GGCC	2 cut(s)	65, 168
BspDI	ATCGAT	1 cut(s)	236
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	139
BspT104I	TTCGAA	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	3 cut(s)	97, 169, 264
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	265
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	110, 229
BstDSI	CCRYGG	3 cut(s)	97, 169, 264
BstEII	GGTNACC	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	171
BstMCI	CGRYCG	3 cut(s)	135, 169, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNI	CCWGG	1 cut(s)	206
BstPI	GGTNACC	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	204
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	117, 240
BstZI	CGGCCG	1 cut(s)	166
Bsu15I	ATCGAT	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	65, 168
BsuTUI	ATCGAT	1 cut(s)	236
BtgI	CCRYGG	3 cut(s)	97, 169, 264
BtsCI	GGATG	1 cut(s)	283
Cac8I	GCNNGC	2 cut(s)	110, 229
CaiI	CAGNNNCTG	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	134
Cfr42I	CCGCGG	1 cut(s)	172
ClaI	ATCGAT	1 cut(s)	236
CsiI	ACCWGGT	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	4 cut(s)	65, 112, 168, 253
CviKI_1	RGCY	4 cut(s)	65, 112, 168, 253
CviQI	GTAC	1 cut(s)	198
DrdI	GACNNNNNNGTC	1 cut(s)	90
DseDI	GACNNNNNNGTC	1 cut(s)	90
EaeI	YGGCCR	1 cut(s)	166
EagI	CGGCCG	1 cut(s)	166
EclXI	CGGCCG	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	97
Eco52I	CGGCCG	1 cut(s)	166
Eco91I	GGTNACC	1 cut(s)	208
EcoO65I	GGTNACC	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	1 cut(s)	101
FaiI	YATR	6 cut(s)	81, 99, 157, 159, 298, 300
FatI	CATG	1 cut(s)	97
FauNDI	CATATG	2 cut(s)	157, 298
Fnu4HI	GCNGC	4 cut(s)	103, 106, 169, 254
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	4 cut(s)	103, 106, 169, 254
FspBI	CTAG	1 cut(s)	310
GluI	GCNGC	4 cut(s)	103, 106, 169, 254
HaeIII	GGCC	2 cut(s)	65, 168
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	1 cut(s)	101
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	3 cut(s)	86, 178, 202
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	231, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
Hsp92II	CATG	1 cut(s)	101
KspI	CCGCGG	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	5 cut(s)	47, 148, 191, 218, 226
Lsp1109I	GCAGC	2 cut(s)	117, 240
MabI	ACCWGGT	1 cut(s)	204
MaeI	CTAG	1 cut(s)	310
MaeIII	GTNAC	3 cut(s)	16, 92, 208
MboII	GAAGA	1 cut(s)	68
MluCI	AATT	1 cut(s)	176
MnlI	CCTC	5 cut(s)	33, 203, 268, 279, 283
MseI	TTAA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	171
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	253
NcoI	CCATGG	1 cut(s)	97
NdeI	CATATG	2 cut(s)	157, 298
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	3 cut(s)	16, 92, 208
NspV	TTCGAA	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	183
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	4 cut(s)	104, 107, 170, 255
Psp6I	CCWGG	1 cut(s)	204
PspEI	GGTNACC	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	253
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SacII	CCGCGG	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	4 cut(s)	103, 106, 169, 254
ScrFI	CCNGG	1 cut(s)	206
SetI	ASST	6 cut(s)	114, 191, 195, 210, 255, 294
SexAI	ACCWGGT	1 cut(s)	204
Sfr303I	CCGCGG	1 cut(s)	172
SfuI	TTCGAA	1 cut(s)	242
SgrBI	CCGCGG	1 cut(s)	172
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	4 cut(s)	102, 169, 171, 256
SspMI	CTAG	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	265
TaqI	TCGA	3 cut(s)	236, 242, 273
TasI	AATT	1 cut(s)	176
TatI	WGTACW	1 cut(s)	197
TauI	GCSGC	2 cut(s)	105, 171
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseFI	GTSAC	3 cut(s)	16, 92, 208
TseI	GCWGC	2 cut(s)	105, 253
Tsp45I	GTSAC	3 cut(s)	16, 92, 208
TspDTI	ATGAA	1 cut(s)	174
TspGWI	ACGGA	1 cut(s)	104
Tth111I	GACNNNGTC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	176
XspI	CTAG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.