Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0023090

Physical Location & Seq

Genomic Coordinates Reverse (-)

14394102 .. 14394648

Gene Structure 547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00394080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGTATTTGCTGTGTGACCCCTCCCCAAAACGGGTTCGCTCTTAAAGAACAAGAAGAACAGGCCGAACCCATTTGCCATAGACTACGCCGTCACCATGGCGGCGGCAAGCCCTCTGTCTTGAAAGACCCGACCGGCACCGAAATCGAGCGGACATATGAACTCGGCCGCGGAGAATTCGGAATCACCTACCTCTGTGCGACCGGGTCACTAGCGACAAGTTCGCTTGCAAATCGATTTCGAAGCGAAGGCTGCGGACGACCGTGGACATCGAGGATTGGGGGACGCTCTTCTCGGAAGAGGTTTGGTCACCGTGTTTGCAACAAAGAGCATGTCCATGGTCGGGACGAGAAAACCGGTGAGGTTCCAACTATGGACTCGATTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0004697 GO:0004698 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8 Pkinase

Protein Analysis

129

Amino Acids

14.32

Weight (kDa)

9.24

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023090)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002833.1_g000021
rosa_roxburghii	Rroxscaffold_1G00027610 Rroxscaffold_1G00028710 Rroxscaffold_6G00394080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	137
AccBSI	CCGCTC	1 cut(s)	151
AccII	CGCG	1 cut(s)	171
AciI	CCGC	6 cut(s)	102, 105, 151, 169, 171, 255
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	176
AfiI	CCNNNNNNNGG	3 cut(s)	32, 33, 343
AgeI	ACCGGT	1 cut(s)	356
AgsI	TTSAA	1 cut(s)	124
AoxI	GGCC	2 cut(s)	63, 166
ApeKI	GCWGC	1 cut(s)	252
ApoI	RAATTY	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	318, 350
AsiGI	ACCGGT	1 cut(s)	356
AsuC2I	CCSGG	1 cut(s)	205
AsuHPI	GGTGA	4 cut(s)	86, 178, 302, 371
AsuII	TTCGAA	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	239
BceAI	ACGGC	1 cut(s)	75
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BcnI	CCSGG	1 cut(s)	205
BfaI	CTAG	1 cut(s)	212
BisI	GCNGC	4 cut(s)	103, 106, 169, 253
BlsI	GCNGC	4 cut(s)	104, 107, 170, 254
Bme1390I	CCNGG	1 cut(s)	205
BmiI	GGNNCC	2 cut(s)	139, 366
BmrFI	CCNGG	1 cut(s)	205
Bpu14I	TTCGAA	1 cut(s)	241
BpuMI	CCSGG	1 cut(s)	205
Bsa29I	ATCGAT	1 cut(s)	235
BsaJI	CCNNGG	4 cut(s)	97, 169, 263, 337
BsaWI	WCCGGW	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 33, 343
Bse118I	RCCGGY	2 cut(s)	134, 356
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	4 cut(s)	97, 169, 263, 337
BseLI	CCNNNNNNNGG	3 cut(s)	32, 33, 343
BseX3I	CGGCCG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	171
Bsh1285I	CGRYCG	4 cut(s)	135, 169, 204, 263
BshFI	GGCC	2 cut(s)	65, 168
BshNI	GGYRCC	1 cut(s)	137
BshTI	ACCGGT	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	235
BsiEI	CGRYCG	4 cut(s)	135, 169, 204, 263
BsiSI	CCGG	3 cut(s)	135, 204, 357
BslFI	GGGAC	2 cut(s)	297, 359
BslI	CCNNNNNNNGG	3 cut(s)	32, 33, 343
BsmFI	GGGAC	2 cut(s)	297, 359
BsnI	GGCC	2 cut(s)	65, 168
Bsp119I	TTCGAA	1 cut(s)	241
Bsp19I	CCATGG	2 cut(s)	97, 337
BspACI	CCGC	6 cut(s)	102, 105, 151, 169, 171, 255
BspANI	GGCC	2 cut(s)	65, 168
BspDI	ATCGAT	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	139, 366
BspQI	GCTCTTC	1 cut(s)	295
BspT104I	TTCGAA	1 cut(s)	241
BspT107I	GGYRCC	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	151
BsrFI	RCCGGY	2 cut(s)	134, 356
BssAI	RCCGGY	2 cut(s)	134, 356
BssECI	CCNNGG	4 cut(s)	97, 169, 263, 337
BssT1I	CCWWGG	2 cut(s)	97, 337
Bst4CI	ACNGT	2 cut(s)	264, 314
Bst6I	CTCTTC	2 cut(s)	293, 295
BstBI	TTCGAA	1 cut(s)	241
BstC8I	GCNNGC	2 cut(s)	110, 228
BstDSI	CCRYGG	4 cut(s)	97, 169, 263, 337
BstEII	GGTNACC	1 cut(s)	308
BstFNI	CGCG	1 cut(s)	171
BstMCI	CGRYCG	4 cut(s)	135, 169, 204, 263
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	335
BstPI	GGTNACC	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	203
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	239
BstZI	CGGCCG	1 cut(s)	166
Bsu15I	ATCGAT	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	65, 168
BsuTUI	ATCGAT	1 cut(s)	235
BtgI	CCRYGG	4 cut(s)	97, 169, 263, 337
Cac8I	GCNNGC	2 cut(s)	110, 228
Cfr10I	RCCGGY	2 cut(s)	134, 356
Cfr42I	CCGCGG	1 cut(s)	172
ClaI	ATCGAT	1 cut(s)	235
CseI	GACGC	1 cut(s)	294
CspAI	ACCGGT	1 cut(s)	356
CviAII	CATG	3 cut(s)	98, 332, 338
CviJI	RGCY	4 cut(s)	65, 112, 168, 252
CviKI_1	RGCY	4 cut(s)	65, 112, 168, 252
DrdI	GACNNNNNNGTC	1 cut(s)	90
DseDI	GACNNNNNNGTC	1 cut(s)	90
EaeI	YGGCCR	1 cut(s)	166
EagI	CGGCCG	1 cut(s)	166
Eam1104I	CTCTTC	2 cut(s)	293, 295
EarI	CTCTTC	2 cut(s)	293, 295
EclXI	CGGCCG	1 cut(s)	166
Eco130I	CCWWGG	2 cut(s)	97, 337
Eco52I	CGGCCG	1 cut(s)	166
Eco91I	GGTNACC	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	176
EcoT14I	CCWWGG	2 cut(s)	97, 337
ErhI	CCWWGG	2 cut(s)	97, 337
FaeI	CATG	3 cut(s)	101, 335, 341
FaiI	YATR	7 cut(s)	81, 99, 157, 159, 333, 339, 374
FaqI	GGGAC	2 cut(s)	297, 359
FatI	CATG	3 cut(s)	97, 331, 337
FauNDI	CATATG	1 cut(s)	157
Fnu4HI	GCNGC	4 cut(s)	103, 106, 169, 253
Fsp4HI	GCNGC	4 cut(s)	103, 106, 169, 253
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	4 cut(s)	103, 106, 169, 253
HaeIII	GGCC	2 cut(s)	65, 168
HapII	CCGG	3 cut(s)	135, 204, 357
HgaI	GACGC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	101, 335, 341
HinfI	GANTC	3 cut(s)	183, 377, 382
HpaII	CCGG	3 cut(s)	135, 204, 357
HphI	GGTGA	4 cut(s)	86, 178, 302, 371
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	2 cut(s)	182, 297
Hpy188III	TCNNGA	2 cut(s)	121, 344
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	2 cut(s)	264, 314
HpyCH4V	TGCA	2 cut(s)	230, 321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	101, 335, 341
KspI	CCGCGG	1 cut(s)	172
LguI	GCTCTTC	1 cut(s)	295
LpnPI	CCDG	4 cut(s)	47, 148, 217, 370
Lsp1109I	GCAGC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	4 cut(s)	16, 92, 207, 308
MbiI	CCGCTC	1 cut(s)	151
MboII	GAAGA	3 cut(s)	68, 282, 310
MluCI	AATT	1 cut(s)	176
MlyI	GAGTC	1 cut(s)	371
MnlI	CCTC	6 cut(s)	33, 124, 203, 267, 294, 355
MseI	TTAA	1 cut(s)	45
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	171
MspI	CCGG	3 cut(s)	135, 204, 357
MspR9I	CCNGG	1 cut(s)	205
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	252
NciI	CCSGG	1 cut(s)	205
NcoI	CCATGG	2 cut(s)	97, 337
NdeI	CATATG	1 cut(s)	157
NlaIII	CATG	3 cut(s)	101, 335, 341
NlaIV	GGNNCC	2 cut(s)	139, 366
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	4 cut(s)	16, 92, 207, 308
NspI	RCATGY	1 cut(s)	335
NspV	TTCGAA	1 cut(s)	241
PciSI	GCTCTTC	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	183, 382
PflFI	GACNNNGTC	1 cut(s)	205
PinAI	ACCGGT	1 cut(s)	356
PkrI	GCNGC	4 cut(s)	104, 107, 170, 254
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PspEI	GGTNACC	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	139, 366
PsyI	GACNNNGTC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	336
SacII	CCGCGG	1 cut(s)	172
SapI	GCTCTTC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	4 cut(s)	103, 106, 169, 253
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	1 cut(s)	205
SetI	ASST	4 cut(s)	191, 195, 305, 366
Sfr303I	CCGCGG	1 cut(s)	172
SfuI	TTCGAA	1 cut(s)	241
SgrBI	CCGCGG	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	6 cut(s)	102, 105, 151, 169, 171, 255
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	2 cut(s)	97, 337
TaaI	ACNGT	2 cut(s)	264, 314
TaqI	TCGA	6 cut(s)	147, 235, 241, 272, 380, 385
TasI	AATT	1 cut(s)	176
TauI	GCSGC	3 cut(s)	105, 108, 171
TfiI	GAWTC	2 cut(s)	183, 382
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseFI	GTSAC	4 cut(s)	16, 92, 207, 308
TseI	GCWGC	1 cut(s)	252
Tsp45I	GTSAC	4 cut(s)	16, 92, 207, 308
TspDTI	ATGAA	1 cut(s)	174
Tth111I	GACNNNGTC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	1 cut(s)	335
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.