Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002892.1

Orthogroup ID

OG0021660

Physical Location & Seq

Genomic Coordinates Forward (+)

275215 .. 276186

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002892.1_g000072.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgttaagtagattgagacagcaggtagctagggaagtgagtgagacattggcttcaataagtaatctaaaggaggtagtcaagcattatgaagggcctagtgtcatacaaaatcaacatgagattataggttcttgcaaagtacctgaaccttcatcgcctacagtgatgcctgagattgaggattttgttgaagtgcatcaattaccagtgcatcttggagtaaaactaccttcaccaaaggttctaattacaattgaactagagtcccagccaatgaaaaatcaatggcaaaagggaaatcttattggtcgtggcacttttagcagtgtttatcttgctaccaatagagaaactggagctttatgtgcaatgaagaaagttgaactacttcctgatgacccaaaatcagcagagtgtataatgcagctacagcaggttattatccagtcggccctaagggcgaagaagaccaccgtcgaccccaagacgaaggaggtccacccatcagaacaagaagttgttttagagatgcctaaccactctcatcttcctctcgagggagagacagtcgttcgtctgacagccgctcgagccaagctcacggtggttgaggttcggcgacaagagaaggatgcaaagaggcctgccggagtgtgccgtttggtgcaaagggaaaaggccttgccgcaaaaagatcctggtggtggcgaggcctttaccatagctggcttggaaccgcacacttcggtgggaccagccaccactgatgctgtcccagttgccactcttcagaggaagaggcggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000187 GO:0001932 GO:0001934 GO:0002682 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009719 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0032101 GO:0032147 GO:0032268 GO:0032270 GO:0032879 GO:0033554 GO:0033674 GO:0035556 GO:0035690 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043900 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1900150 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:2000071

KEGG Pathways

Metabolic & Signaling

ko04010 ko04722 ko04912 ko05166 map04010 map04722 map04912 map05166

Pfam Domains

Protein Families

Pkinase

Protein Analysis

269

Amino Acids

29.68

Weight (kDa)

8.83

Isoelectric Point (pI)

56.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021660)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002892.1_g000072 Rmu_sc0020206.1_g000002 Rmu_sc0020207.1_g000002
rosa_samantha	Rh2DG261900
rosa_wichuraiana	Rw2G013620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	13, 427
AccBSI	CCGCTC	1 cut(s)	590
AccI	GTMKAC	1 cut(s)	480
AciI	CCGC	4 cut(s)	588, 689, 740, 805
AclWI	GGATC	1 cut(s)	692
AcuI	CTGAAG	1 cut(s)	776
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	2 cut(s)	560, 707
AgsI	TTSAA	4 cut(s)	57, 194, 260, 386
AjnI	CCWGG	1 cut(s)	700
AleI	CACNNNNGTG	1 cut(s)	749
AluBI	AGCT	5 cut(s)	29, 362, 430, 601, 728
AluI	AGCT	5 cut(s)	29, 362, 430, 601, 728
Alw26I	GTCTC	3 cut(s)	10, 38, 560
AlwI	GGATC	1 cut(s)	692
Ama87I	CYCGRG	2 cut(s)	557, 591
AoxI	GGCC	5 cut(s)	95, 453, 644, 681, 714
ApeKI	GCWGC	1 cut(s)	427
Asp700I	GAANNNNTTC	1 cut(s)	390
AspS9I	GGNCC	4 cut(s)	95, 454, 499, 755
AsuHPI	GGTGA	1 cut(s)	228
AvaI	CYCGRG	2 cut(s)	557, 591
AvaII	GGWCC	2 cut(s)	499, 755
AxyI	CCTNAGG	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	476
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	1 cut(s)	514
BceAI	ACGGC	1 cut(s)	645
BciT130I	CCWGG	1 cut(s)	702
BcoDI	GTCTC	3 cut(s)	10, 38, 560
BfaI	CTAG	3 cut(s)	30, 99, 263
BfmI	CTRYAG	2 cut(s)	162, 431
BfuAI	ACCTGC	2 cut(s)	13, 427
BglI	GCCNNNNNGGC	1 cut(s)	461
BisI	GCNGC	3 cut(s)	428, 588, 689
BlsI	GCNGC	3 cut(s)	429, 589, 690
Bme1390I	CCNGG	1 cut(s)	702
Bme18I	GGWCC	2 cut(s)	499, 755
BmeT110I	CYCGRG	2 cut(s)	557, 591
BmgT120I	GGNCC	4 cut(s)	95, 454, 499, 755
BmiI	GGNNCC	2 cut(s)	738, 756
BmrFI	CCNGG	1 cut(s)	702
BmrI	ACTGGG	1 cut(s)	773
BmsI	GCATC	6 cut(s)	159, 208, 223, 522, 625, 760
BmuI	ACTGGG	1 cut(s)	773
BoxI	GACNNNNGTC	1 cut(s)	476
BpiI	GAAGAC	1 cut(s)	476
BplI	GAGNNNNNCTC	2 cut(s)	585, 617
BpmI	CTGGAG	1 cut(s)	378
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	2 cut(s)	560, 707
Bse1I	ACTGG	4 cut(s)	209, 361, 448, 779
Bse21I	CCTNAGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	702
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	2 cut(s)	560, 707
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	4 cut(s)	209, 361, 448, 779
BseXI	GCAGC	1 cut(s)	439
BseYI	CCCAGC	1 cut(s)	270
BshFI	GGCC	5 cut(s)	97, 455, 646, 683, 716
BsiHKCI	CYCGRG	2 cut(s)	557, 591
BsiSI	CCGG	1 cut(s)	651
BslFI	GGGAC	3 cut(s)	253, 761, 768
BslI	CCNNNNNNNGG	2 cut(s)	560, 707
BsmAI	GTCTC	3 cut(s)	10, 38, 560
BsmFI	GGGAC	3 cut(s)	253, 761, 768
BsnI	GGCC	5 cut(s)	97, 455, 646, 683, 716
BsoBI	CYCGRG	2 cut(s)	557, 591
Bsp143I	GATC	1 cut(s)	697
BspACI	CCGC	4 cut(s)	588, 689, 740, 805
BspANI	GGCC	5 cut(s)	97, 455, 646, 683, 716
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	738, 756
BspMI	ACCTGC	2 cut(s)	13, 427
BspPI	GGATC	1 cut(s)	692
BsrBI	CCGCTC	1 cut(s)	590
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	4 cut(s)	209, 361, 448, 779
BssMI	GATC	1 cut(s)	697
Bst2UI	CCWGG	1 cut(s)	702
Bst4CI	ACNGT	4 cut(s)	166, 478, 571, 607
Bst6I	CTCTTC	2 cut(s)	794, 795
BstC8I	GCNNGC	2 cut(s)	648, 730
BstDEI	CTNAG	2 cut(s)	174, 458
BstF5I	GGATG	1 cut(s)	640
BstKTI	GATC	1 cut(s)	700
BstMAI	GTCTC	3 cut(s)	10, 38, 560
BstMBI	GATC	1 cut(s)	697
BstMWI	GCNNNNNNNGC	5 cut(s)	324, 368, 433, 461, 593
BstNI	CCWGG	1 cut(s)	702
BstPAI	GACNNNNGTC	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	700
BstSFI	CTRYAG	2 cut(s)	162, 431
BstV1I	GCAGC	1 cut(s)	439
BstV2I	GAAGAC	1 cut(s)	476
BstX2I	RGATCY	1 cut(s)	697
BstYI	RGATCY	1 cut(s)	697
Bsu36I	CCTNAGG	1 cut(s)	458
BsuRI	GGCC	5 cut(s)	97, 455, 646, 683, 716
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	640
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	4 cut(s)	171, 216, 334, 765
BveI	ACCTGC	2 cut(s)	13, 427
Cac8I	GCNNGC	2 cut(s)	648, 730
Cfr13I	GGNCC	4 cut(s)	95, 454, 499, 755
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	1 cut(s)	119
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	2 cut(s)	174, 458
DpnI	GATC	1 cut(s)	699
DpnII	GATC	1 cut(s)	697
Eam1104I	CTCTTC	2 cut(s)	794, 795
EarI	CTCTTC	2 cut(s)	794, 795
Eco147I	AGGCCT	3 cut(s)	646, 683, 716
Eco47I	GGWCC	2 cut(s)	499, 755
Eco57I	CTGAAG	1 cut(s)	776
Eco81I	CCTNAGG	1 cut(s)	458
Eco88I	CYCGRG	2 cut(s)	557, 591
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	700
FaeI	CATG	1 cut(s)	122
FaiI	YATR	7 cut(s)	90, 107, 120, 128, 367, 422, 725
FaqI	GGGAC	3 cut(s)	253, 761, 768
FatI	CATG	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	3 cut(s)	428, 588, 689
FokI	GGATG	1 cut(s)	647
Fsp4HI	GCNGC	3 cut(s)	428, 588, 689
FspBI	CTAG	3 cut(s)	30, 99, 263
GluI	GCNGC	3 cut(s)	428, 588, 689
GsaI	CCCAGC	1 cut(s)	274
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	5 cut(s)	97, 455, 646, 683, 716
HapII	CCGG	1 cut(s)	651
Hin1II	CATG	1 cut(s)	122
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	1 cut(s)	651
HphI	GGTGA	1 cut(s)	228
Hpy166II	GTNNAC	2 cut(s)	481, 502
Hpy188I	TCNGA	3 cut(s)	511, 582, 795
Hpy188III	TCNNGA	2 cut(s)	395, 557
Hpy8I	GTNNAC	2 cut(s)	481, 502
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	5 cut(s)	86, 162, 243, 487, 625
HpyCH4III	ACNGT	4 cut(s)	166, 478, 571, 607
HpyCH4V	TGCA	7 cut(s)	138, 199, 214, 371, 427, 638, 670
HpyF10VI	GCNNNNNNNGC	5 cut(s)	324, 368, 433, 461, 593
HpyF3I	CTNAG	2 cut(s)	174, 458
Hsp92II	CATG	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	697
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	6 cut(s)	159, 208, 223, 522, 625, 760
MaeI	CTAG	3 cut(s)	30, 99, 263
MalI	GATC	1 cut(s)	699
MbiI	CCGCTC	1 cut(s)	590
MboI	GATC	1 cut(s)	697
MboII	GAAGA	5 cut(s)	388, 478, 481, 542, 782
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	1 cut(s)	697
MluCI	AATT	3 cut(s)	203, 249, 255
MlyI	GAGTC	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	749
MspI	CCGG	1 cut(s)	651
MspR9I	CCNGG	1 cut(s)	702
MunI	CAATTG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	702
MwoI	GCNNNNNNNGC	5 cut(s)	324, 368, 433, 461, 593
NdeII	GATC	1 cut(s)	697
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	2 cut(s)	738, 756
OliI	CACNNNNGTG	1 cut(s)	749
PaeR7I	CTCGAG	2 cut(s)	557, 591
PceI	AGGCCT	3 cut(s)	646, 683, 716
PdmI	GAANNNNTTC	1 cut(s)	390
PkrI	GCNGC	3 cut(s)	429, 589, 690
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PshAI	GACNNNNGTC	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	700
PspFI	CCCAGC	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	700
PspN4I	GGNNCC	2 cut(s)	738, 756
PspPI	GGNCC	4 cut(s)	95, 454, 499, 755
PspXI	VCTCGAGB	1 cut(s)	591
PsuI	RGATCY	1 cut(s)	697
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	749
SalI	GTCGAC	1 cut(s)	479
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	3 cut(s)	428, 588, 689
Sau3AI	GATC	1 cut(s)	697
Sau96I	GGNCC	4 cut(s)	95, 454, 499, 755
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	702
SfaNI	GCATC	6 cut(s)	159, 208, 223, 522, 625, 760
SfcI	CTRYAG	2 cut(s)	162, 431
Sfr274I	CTCGAG	2 cut(s)	557, 591
SinI	GGWCC	2 cut(s)	499, 755
SlaI	CTCGAG	2 cut(s)	557, 591
SmiMI	CAYNNNNRTG	1 cut(s)	749
SmlI	CTYRAG	2 cut(s)	557, 591
SmoI	CTYRAG	2 cut(s)	557, 591
Sse9I	AATT	3 cut(s)	203, 249, 255
SseBI	AGGCCT	3 cut(s)	646, 683, 716
SsiI	CCGC	4 cut(s)	588, 689, 740, 805
SspMI	CTAG	3 cut(s)	30, 99, 263
StuI	AGGCCT	3 cut(s)	646, 683, 716
StyD4I	CCNGG	1 cut(s)	700
TaaI	ACNGT	4 cut(s)	166, 478, 571, 607
TaqI	TCGA	3 cut(s)	480, 558, 592
TasI	AATT	3 cut(s)	203, 249, 255
TauI	GCSGC	2 cut(s)	590, 691
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	4 cut(s)	171, 216, 334, 772
TseI	GCWGC	1 cut(s)	427
TspDTI	ATGAA	4 cut(s)	105, 144, 293, 389
TspRI	CASTG	4 cut(s)	171, 216, 334, 772
VpaK11BI	GGWCC	2 cut(s)	499, 755
XcmI	CCANNNNNNNNNTGG	2 cut(s)	604, 730
XhoI	CTCGAG	2 cut(s)	557, 591
XmiI	GTMKAC	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	390
XspI	CTAG	3 cut(s)	30, 99, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.