Rmu_sc0020206.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020206.1
OG0021660
Physical Location & Seq
Forward (+)
1233 .. 1571
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020206.1_g000002.1.cds

Sequence Viewer

Length: 339 bp
atgcctcaccactcccatctccctctcgccagggaggcagatgtgcggtcggccattgtccaaacggagagtcccatagtcgagggtcggcaccatgagaaggccgtggagaggcctgctggagtacgtcgtgaggtgcagaaggaaaaaacagtgttgctagggactcttggcggtagggaggcctttaccatagcgggcctggatccgcatgcgtctgcaggagggagtgtccccgtcgccgtcctaactgcccttatgcagaagaagaggcggcataatgacgctgaggaagaagaggaggcggtggataatatgccgttctccgagcgccaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.3

Weight (kDa)

6.15

Isoelectric Point (pI)

70.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021660)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002892.1_g000072 Rmu_sc0020206.1_g000002 Rmu_sc0020207.1_g000002
rosa_samantha Rh2DG261900
rosa_wichuraiana Rw2G013620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 90
AciI CCGC 6 cut(s) 46, 174, 197, 209, 274, 305
AclWI GGATC 2 cut(s) 200, 213
AcoI YGGCCR 1 cut(s) 51
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 100, 111
AjnI CCWGG 2 cut(s) 29, 201
AlwI GGATC 2 cut(s) 200, 213
AoxI GGCC 5 cut(s) 51, 102, 113, 183, 199
ArsI GACNNNNNNTTYG 2 cut(s) 55, 87
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 199
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 90
BbvCI CCTCAGC 1 cut(s) 288
BccI CCATC 1 cut(s) 24
BceAI ACGGC 3 cut(s) 89, 227, 304
BciT130I CCWGG 2 cut(s) 31, 203
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 334
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
Bme1390I CCNGG 2 cut(s) 31, 203
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 92, 207
BmrFI CCNGG 2 cut(s) 31, 203
BpmI CTGGAG 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 30, 105
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 111
BseBI CCWGG 2 cut(s) 31, 203
BseDI CCNNGG 2 cut(s) 30, 105
BseLI CCNNNNNNNGG 2 cut(s) 100, 111
BseMII CTCAG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 314
BsgI GTGCAG 1 cut(s) 158
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 5 cut(s) 53, 104, 115, 185, 201
BshNI GGYRCC 1 cut(s) 90
BsiEI CGRYCG 1 cut(s) 50
BslFI GGGAC 3 cut(s) 57, 178, 218
BslI CCNNNNNNNGG 2 cut(s) 100, 111
BsmFI GGGAC 3 cut(s) 57, 178, 218
BsnI GGCC 5 cut(s) 53, 104, 115, 185, 201
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 6 cut(s) 46, 174, 197, 209, 274, 305
BspANI GGCC 5 cut(s) 53, 104, 115, 185, 201
BspCNI CTCAG 1 cut(s) 280
BspLI GGNNCC 2 cut(s) 92, 207
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 2 cut(s) 200, 213
BspT107I GGYRCC 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 30, 105
BssMI GATC 1 cut(s) 205
Bst2UI CCWGG 2 cut(s) 31, 203
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 2 cut(s) 263, 291
BstC8I GCNNGC 3 cut(s) 117, 199, 213
BstDEI CTNAG 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 1 cut(s) 333
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 2 cut(s) 31, 203
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 2 cut(s) 29, 201
BstSFI CTRYAG 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 5 cut(s) 53, 104, 115, 185, 201
BtgI CCRYGG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 3 cut(s) 117, 199, 213
CfoI GCGC 1 cut(s) 333
Cfr13I GGNCC 1 cut(s) 199
CseI GACGC 2 cut(s) 204, 293
Csp6I GTAC 1 cut(s) 125
CviAII CATG 2 cut(s) 95, 212
CviJI RGCY 5 cut(s) 53, 104, 115, 185, 201
CviKI_1 RGCY 5 cut(s) 53, 104, 115, 185, 201
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 1 cut(s) 288
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 2 cut(s) 263, 291
EarI CTCTTC 2 cut(s) 263, 291
Eco147I AGGCCT 2 cut(s) 115, 185
EcoRII CCWGG 2 cut(s) 29, 201
FaeI CATG 2 cut(s) 98, 215
FaiI YATR 7 cut(s) 77, 96, 194, 213, 260, 279, 317
FaqI GGGAC 3 cut(s) 57, 178, 218
FatI CATG 2 cut(s) 94, 211
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 275
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 332
GluI GCNGC 1 cut(s) 275
GsuI CTGGAG 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 5 cut(s) 53, 104, 115, 185, 201
HgaI GACGC 2 cut(s) 204, 293
HhaI GCGC 1 cut(s) 333
Hin1II CATG 2 cut(s) 98, 215
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HinfI GANTC 2 cut(s) 70, 166
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 1 cut(s) 131
Hpy99I CGWCG 2 cut(s) 132, 242
HpyAV CCTTC 2 cut(s) 94, 136
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 3 cut(s) 139, 221, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 2 cut(s) 98, 215
HspAI GCGC 1 cut(s) 331
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 7 cut(s) 16, 43, 105, 129, 188, 207, 215
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 127
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 4 cut(s) 277, 280, 305, 308
MflI RGATCY 1 cut(s) 205
MlyI GAGTC 2 cut(s) 79, 160
MspR9I CCNGG 2 cut(s) 31, 203
MvaI CCWGG 2 cut(s) 31, 203
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 1 cut(s) 205
NlaIII CATG 2 cut(s) 98, 215
NlaIV GGNNCC 2 cut(s) 92, 207
NspI RCATGY 1 cut(s) 215
PaeI GCATGC 1 cut(s) 215
PceI AGGCCT 2 cut(s) 115, 185
PkrI GCNGC 1 cut(s) 276
PleI GAGTC 2 cut(s) 78, 160
PpsI GAGTC 2 cut(s) 78, 160
Psp6I CCWGG 2 cut(s) 29, 201
PspGI CCWGG 2 cut(s) 29, 201
PspN4I GGNNCC 2 cut(s) 92, 207
PspPI GGNCC 1 cut(s) 199
PstI CTGCAG 1 cut(s) 223
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 2 cut(s) 79, 160
ScrFI CCNGG 2 cut(s) 31, 203
SetI ASST 2 cut(s) 130, 138
SfcI CTRYAG 1 cut(s) 219
SphI GCATGC 1 cut(s) 215
SseBI AGGCCT 2 cut(s) 115, 185
SsiI CCGC 6 cut(s) 46, 174, 197, 209, 274, 305
SspMI CTAG 1 cut(s) 161
StuI AGGCCT 2 cut(s) 115, 185
StyD4I CCNGG 2 cut(s) 29, 201
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 81
TauI GCSGC 1 cut(s) 277
TscAI CASTG 1 cut(s) 159
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 1 cut(s) 159
XceI RCATGY 1 cut(s) 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.