Rmu_sc0002915.1_g000017

XH XS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002915.1
OG0019827
Physical Location & Seq
Reverse (-)
55698 .. 56734
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 924 bp
atgtctcacagatcagaagaaatggatatcggaaaactgcagcaaaatgctcgtgaccatcttgaaaaggccttcttggagcaaggcaaagcctttttaaaatctgaagggcaaaagaatgatcttaagaaaaagcttgaacagaatgaggctcaaaagaaagatctgcagaaaaagcttgagcagagtgaacttaccaaaaaagagcttcagaagaagattgcaggtgaacaggagtgtcaagggttgtatcttaagattaagaaaaagcacgagcagagtgaaactcagatgaaagagattcagaaaaagcttgagcagagtgaatcccacaagagagagcttgagaagattgaagaagctcaaaagagcgaacttaagaaggcgcttgagcagattgaaggtcaaaagaaagatcttgagcggcgtgaacttgccaaaaaagagcttcagaagaagattgaaggtgannnnnnnnnnnacgagcagactgaaagtcagatgaaagagattcagaaaaagcttgagcacagtgaatcccagaaagtagagcttgagaagattgaagaagctcaaaagagcgaacttaagaaggcgcttgagcagattgaaggtcaaaagaaagatcttgagcggcgtgaacttgccaaaaaagagcttcagaagaagattgaaggtgaacaggtgtggctacggttgtatcttgaggttaagaaaaagcacgagcagactgaaagtcagatgaaagagattcagaaaaagcttgagcagagtgaatcccagaaaagagagcttgagaagattgaagaagctcaaaagagcgaacttaagaaggcgcttgagcagattgaaggtcaaaagaaagatcttgagcagcgtgaacttgccaaaaaaggccacagcttcactttgaggcatccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
XH XS zf-XS

Protein Analysis

307

Amino Acids

35.92

Weight (kDa)

8.97

Isoelectric Point (pI)

67.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019827)

Species Orthologous Gene IDs
pyrus_communis pycom11g08770
rosa_multiflora Rmu_sc0002915.1_g000017
rosa_samantha Rh5BG441200 Rh5BG441300 Rh5CG463800 Rh5CG463900
rosa_wichuraiana Rw5G040020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 215
Acc36I ACCTGC 1 cut(s) 215
AccBSI CCGCTC 2 cut(s) 424, 634
AciI CCGC 2 cut(s) 424, 634
AcuI CTGAAG 4 cut(s) 126, 194, 434, 644
AflII CTTAAG 5 cut(s) 125, 254, 377, 587, 827
AhdI GACNNNNNGTC 2 cut(s) 495, 735
Alw21I GWGCWC 1 cut(s) 531
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 2 cut(s) 69, 895
ApeKI GCWGC 2 cut(s) 40, 874
AspLEI GCGC 3 cut(s) 388, 598, 838
AsuHPI GGTGA 3 cut(s) 239, 479, 689
BaeI ACNNNNGTAYC 2 cut(s) 683, 716
BauI CACGAG 3 cut(s) 51, 272, 722
Bbv12I GWGCWC 1 cut(s) 531
BbvI GCAGC 2 cut(s) 52, 886
BccI CCATC 1 cut(s) 66
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 2 cut(s) 38, 167
BfoI RGCGCY 3 cut(s) 389, 599, 839
BfrI CTTAAG 5 cut(s) 125, 254, 377, 587, 827
BfuAI ACCTGC 1 cut(s) 215
BglII AGATCT 4 cut(s) 163, 415, 625, 865
BisI GCNGC 4 cut(s) 41, 425, 635, 875
BlsI GCNGC 4 cut(s) 42, 426, 636, 876
BmeRI GACNNNNNGTC 2 cut(s) 495, 735
BplI GAGNNNNNCTC 2 cut(s) 271, 303
BseGI GGATG 1 cut(s) 916
BseMII CTCAG 1 cut(s) 302
BseXI GCAGC 2 cut(s) 52, 886
BshFI GGCC 2 cut(s) 71, 897
BsiHKAI GWGCWC 1 cut(s) 531
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 2 cut(s) 71, 897
Bsp1286I GDGCHC 1 cut(s) 531
Bsp143I GATC 6 cut(s) 11, 121, 163, 415, 625, 865
BspACI CCGC 2 cut(s) 424, 634
BspANI GGCC 2 cut(s) 71, 897
BspCNI CTCAG 1 cut(s) 301
BspMAI CTGCAG 2 cut(s) 42, 171
BspMI ACCTGC 1 cut(s) 215
BspTI CTTAAG 5 cut(s) 125, 254, 377, 587, 827
BsrBI CCGCTC 2 cut(s) 424, 634
BssMI GATC 6 cut(s) 11, 121, 163, 415, 625, 865
BssSI CACGAG 3 cut(s) 51, 272, 722
Bst2BI CACGAG 3 cut(s) 51, 272, 722
Bst4CI ACNGT 2 cut(s) 533, 696
BstAFI CTTAAG 5 cut(s) 125, 254, 377, 587, 827
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 916
BstH2I RGCGCY 3 cut(s) 389, 599, 839
BstHHI GCGC 3 cut(s) 388, 598, 838
BstKTI GATC 6 cut(s) 14, 124, 166, 418, 628, 868
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 6 cut(s) 11, 121, 163, 415, 625, 865
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstSFI CTRYAG 2 cut(s) 38, 167
BstV1I GCAGC 2 cut(s) 52, 886
BstX2I RGATCY 4 cut(s) 163, 415, 625, 865
BstYI RGATCY 4 cut(s) 163, 415, 625, 865
BsuRI GGCC 2 cut(s) 71, 897
BtsCI GGATG 1 cut(s) 916
BtsIMutI CAGTG 1 cut(s) 538
BveI ACCTGC 1 cut(s) 215
CfoI GCGC 3 cut(s) 388, 598, 838
CviAII CATG 1 cut(s) 921
DdeI CTNAG 1 cut(s) 288
DpnI GATC 6 cut(s) 13, 123, 165, 417, 627, 867
DpnII GATC 6 cut(s) 11, 121, 163, 415, 625, 865
DraI TTTAAA 1 cut(s) 99
DriI GACNNNNNGTC 2 cut(s) 495, 735
Eam1105I GACNNNNNGTC 2 cut(s) 495, 735
Eco147I AGGCCT 1 cut(s) 71
Eco32I GATATC 1 cut(s) 28
Eco57I CTGAAG 4 cut(s) 126, 194, 434, 644
EcoRV GATATC 1 cut(s) 28
FaeI CATG 1 cut(s) 924
FaiI YATR 1 cut(s) 922
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 537, 569
FatI CATG 1 cut(s) 920
Fnu4HI GCNGC 4 cut(s) 41, 425, 635, 875
FokI GGATG 1 cut(s) 903
Fsp4HI GCNGC 4 cut(s) 41, 425, 635, 875
GlaI GCGC 3 cut(s) 387, 597, 837
GluI GCNGC 4 cut(s) 41, 425, 635, 875
HaeII RGCGCY 3 cut(s) 389, 599, 839
HaeIII GGCC 2 cut(s) 71, 897
HhaI GCGC 3 cut(s) 388, 598, 838
Hin1II CATG 1 cut(s) 924
Hin6I GCGC 3 cut(s) 386, 596, 836
HinP1I GCGC 3 cut(s) 386, 596, 836
HindIII AAGCTT 5 cut(s) 134, 176, 311, 521, 761
HinfI GANTC 6 cut(s) 301, 326, 511, 536, 751, 776
HphI GGTGA 3 cut(s) 239, 479, 689
Hpy166II GTNNAC 6 cut(s) 191, 230, 431, 641, 680, 881
Hpy188III TCNNGA 6 cut(s) 53, 62, 419, 629, 704, 869
Hpy8I GTNNAC 6 cut(s) 191, 230, 431, 641, 680, 881
HpyCH4III ACNGT 2 cut(s) 533, 696
HpyCH4V TGCA 3 cut(s) 40, 169, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 1 cut(s) 288
Hsp92II CATG 1 cut(s) 924
HspAI GCGC 3 cut(s) 386, 596, 836
Kzo9I GATC 6 cut(s) 11, 121, 163, 415, 625, 865
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 5 cut(s) 210, 218, 554, 668, 794
Lsp1109I GCAGC 2 cut(s) 52, 886
MaeIII GTNAC 1 cut(s) 53
MalI GATC 6 cut(s) 13, 123, 165, 417, 627, 867
MbiI CCGCTC 2 cut(s) 424, 634
MboI GATC 6 cut(s) 11, 121, 163, 415, 625, 865
MflI RGATCY 4 cut(s) 163, 415, 625, 865
MhlI GDGCHC 1 cut(s) 531
MnlI CCTC 3 cut(s) 142, 700, 906
MseI TTAA 8 cut(s) 98, 126, 255, 261, 378, 588, 711, 828
MspCI CTTAAG 5 cut(s) 125, 254, 377, 587, 827
MwoI GCNNNNNNNGC 1 cut(s) 175
NdeII GATC 6 cut(s) 11, 121, 163, 415, 625, 865
NlaIII CATG 1 cut(s) 924
NmuCI GTSAC 1 cut(s) 53
PaqCI CACCTGC 1 cut(s) 215
PceI AGGCCT 1 cut(s) 71
PfeI GAWTC 6 cut(s) 301, 326, 511, 536, 751, 776
PkrI GCNGC 4 cut(s) 42, 426, 636, 876
PstI CTGCAG 2 cut(s) 42, 171
PsuI RGATCY 4 cut(s) 163, 415, 625, 865
SaqAI TTAA 8 cut(s) 98, 126, 255, 261, 378, 588, 711, 828
SatI GCNGC 4 cut(s) 41, 425, 635, 875
Sau3AI GATC 6 cut(s) 11, 121, 163, 415, 625, 865
SduI GDGCHC 1 cut(s) 531
SfcI CTRYAG 2 cut(s) 38, 167
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 2 cut(s) 424, 634
StuI AGGCCT 1 cut(s) 71
TaaI ACNGT 2 cut(s) 533, 696
TauI GCSGC 2 cut(s) 427, 637
TfiI GAWTC 6 cut(s) 301, 326, 511, 536, 751, 776
Tru1I TTAA 8 cut(s) 98, 126, 255, 261, 378, 588, 711, 828
Tru9I TTAA 8 cut(s) 98, 126, 255, 261, 378, 588, 711, 828
TscAI CASTG 1 cut(s) 538
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 2 cut(s) 40, 874
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 3 cut(s) 308, 518, 758
TspRI CASTG 1 cut(s) 538
Vha464I CTTAAG 5 cut(s) 125, 254, 377, 587, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.