meiotic DNA double-strand break processing
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0166421 |
| rosa_multiflora | Rmu_sc0003016.1_g000008 |
| rosa_rugosa | Rorug02G0522800 |
| rosa_samantha | Rh2BG601000 Rh2DG611200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 14 |
| AccB1I | GGYRCC | 1 cut(s) | 14 |
| AciI | CCGC | 2 cut(s) | 219, 236 |
| AclWI | GGATC | 3 cut(s) | 195, 339, 352 |
| AcsI | RAATTY | 1 cut(s) | 321 |
| AcuI | CTGAAG | 1 cut(s) | 167 |
| AfaI | GTAC | 3 cut(s) | 16, 53, 89 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 25 |
| AgsI | TTSAA | 3 cut(s) | 253, 320, 433 |
| AleI | CACNNNNGTG | 1 cut(s) | 110 |
| Alw21I | GWGCWC | 1 cut(s) | 105 |
| AlwI | GGATC | 3 cut(s) | 195, 339, 352 |
| ApoI | RAATTY | 1 cut(s) | 321 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 253, 285 |
| Asp718I | GGTACC | 1 cut(s) | 14 |
| AsuHPI | GGTGA | 1 cut(s) | 402 |
| AsuII | TTCGAA | 1 cut(s) | 241 |
| BamHI | GGATCC | 1 cut(s) | 344 |
| BanI | GGYRCC | 1 cut(s) | 14 |
| Bbv12I | GWGCWC | 1 cut(s) | 105 |
| BfaI | CTAG | 2 cut(s) | 287, 369 |
| BmiI | GGNNCC | 2 cut(s) | 16, 346 |
| BmsI | GCATC | 1 cut(s) | 210 |
| Bpu14I | TTCGAA | 1 cut(s) | 241 |
| BpuEI | CTTGAG | 1 cut(s) | 399 |
| BsaBI | GATNNNNATC | 1 cut(s) | 303 |
| BsaJI | CCNNGG | 1 cut(s) | 264 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 25 |
| Bse1I | ACTGG | 1 cut(s) | 196 |
| Bse8I | GATNNNNATC | 1 cut(s) | 303 |
| BseDI | CCNNGG | 1 cut(s) | 264 |
| BseGI | GGATG | 2 cut(s) | 115, 409 |
| BseJI | GATNNNNATC | 1 cut(s) | 303 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 25 |
| BseMII | CTCAG | 1 cut(s) | 368 |
| BseNI | ACTGG | 1 cut(s) | 196 |
| BshNI | GGYRCC | 1 cut(s) | 14 |
| BsiHKAI | GWGCWC | 1 cut(s) | 105 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 25 |
| Bsp119I | TTCGAA | 1 cut(s) | 241 |
| Bsp1286I | GDGCHC | 1 cut(s) | 105 |
| Bsp143I | GATC | 3 cut(s) | 187, 210, 344 |
| BspACI | CCGC | 2 cut(s) | 219, 236 |
| BspCNI | CTCAG | 1 cut(s) | 369 |
| BspHI | TCATGA | 1 cut(s) | 207 |
| BspLI | GGNNCC | 2 cut(s) | 16, 346 |
| BspPI | GGATC | 3 cut(s) | 195, 339, 352 |
| BspT104I | TTCGAA | 1 cut(s) | 241 |
| BspT107I | GGYRCC | 1 cut(s) | 14 |
| BsrI | ACTGG | 1 cut(s) | 196 |
| BssECI | CCNNGG | 1 cut(s) | 264 |
| BssMI | GATC | 3 cut(s) | 187, 210, 344 |
| BssT1I | CCWWGG | 1 cut(s) | 264 |
| BstBI | TTCGAA | 1 cut(s) | 241 |
| BstDEI | CTNAG | 1 cut(s) | 377 |
| BstF5I | GGATG | 2 cut(s) | 115, 409 |
| BstKTI | GATC | 3 cut(s) | 190, 213, 347 |
| BstMBI | GATC | 3 cut(s) | 187, 210, 344 |
| BstX2I | RGATCY | 1 cut(s) | 344 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 271 |
| BstYI | RGATCY | 1 cut(s) | 344 |
| BtsCI | GGATG | 2 cut(s) | 115, 409 |
| BtsIMutI | CAGTG | 1 cut(s) | 203 |
| CciI | TCATGA | 1 cut(s) | 207 |
| Csp6I | GTAC | 3 cut(s) | 15, 52, 88 |
| CviAII | CATG | 3 cut(s) | 208, 311, 355 |
| CviJI | RGCY | 2 cut(s) | 170, 269 |
| CviKI_1 | RGCY | 2 cut(s) | 170, 269 |
| CviQI | GTAC | 3 cut(s) | 15, 52, 88 |
| DdeI | CTNAG | 1 cut(s) | 377 |
| DpnI | GATC | 3 cut(s) | 189, 212, 346 |
| DpnII | GATC | 3 cut(s) | 187, 210, 344 |
| Eco130I | CCWWGG | 1 cut(s) | 264 |
| Eco57I | CTGAAG | 1 cut(s) | 167 |
| EcoT14I | CCWWGG | 1 cut(s) | 264 |
| ErhI | CCWWGG | 1 cut(s) | 264 |
| FaeI | CATG | 3 cut(s) | 211, 314, 358 |
| FaiI | YATR | 8 cut(s) | 81, 152, 209, 312, 334, 340, 356, 392 |
| FatI | CATG | 3 cut(s) | 207, 310, 354 |
| FokI | GGATG | 2 cut(s) | 122, 416 |
| FspBI | CTAG | 2 cut(s) | 287, 369 |
| Hin1II | CATG | 3 cut(s) | 211, 314, 358 |
| HinfI | GANTC | 1 cut(s) | 173 |
| HphI | GGTGA | 1 cut(s) | 402 |
| Hpy188I | TCNGA | 2 cut(s) | 162, 378 |
| Hpy188III | TCNNGA | 6 cut(s) | 185, 208, 250, 348, 369, 416 |
| Hpy99I | CGWCG | 1 cut(s) | 59 |
| HpyAV | CCTTC | 1 cut(s) | 139 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 90 |
| HpyCH4V | TGCA | 1 cut(s) | 201 |
| HpyF3I | CTNAG | 1 cut(s) | 377 |
| HpySE526I | ACGT | 2 cut(s) | 57, 90 |
| Hsp92II | CATG | 3 cut(s) | 211, 314, 358 |
| KpnI | GGTACC | 1 cut(s) | 18 |
| Kzo9I | GATC | 3 cut(s) | 187, 210, 344 |
| LpnPI | CCDG | 4 cut(s) | 136, 170, 209, 361 |
| LweI | GCATC | 1 cut(s) | 210 |
| MaeI | CTAG | 2 cut(s) | 287, 369 |
| MaeII | ACGT | 2 cut(s) | 57, 90 |
| MaeIII | GTNAC | 1 cut(s) | 408 |
| MalI | GATC | 3 cut(s) | 189, 212, 346 |
| MboI | GATC | 3 cut(s) | 187, 210, 344 |
| MboII | GAAGA | 3 cut(s) | 127, 265, 268 |
| MflI | RGATCY | 1 cut(s) | 344 |
| MhlI | GDGCHC | 1 cut(s) | 105 |
| MluCI | AATT | 3 cut(s) | 29, 321, 364 |
| MmeI | TCCRAC | 1 cut(s) | 381 |
| MnlI | CCTC | 4 cut(s) | 19, 318, 380, 423 |
| MslI | CAYNNNNRTG | 2 cut(s) | 110, 206 |
| NdeII | GATC | 3 cut(s) | 187, 210, 344 |
| NlaIII | CATG | 3 cut(s) | 211, 314, 358 |
| NlaIV | GGNNCC | 2 cut(s) | 16, 346 |
| NmuCI | GTSAC | 1 cut(s) | 408 |
| NspV | TTCGAA | 1 cut(s) | 241 |
| OliI | CACNNNNGTG | 1 cut(s) | 110 |
| PagI | TCATGA | 1 cut(s) | 207 |
| PfeI | GAWTC | 1 cut(s) | 173 |
| PspN4I | GGNNCC | 2 cut(s) | 16, 346 |
| PsuI | RGATCY | 1 cut(s) | 344 |
| RsaI | GTAC | 3 cut(s) | 16, 53, 89 |
| RsaNI | GTAC | 3 cut(s) | 15, 52, 88 |
| RseI | CAYNNNNRTG | 2 cut(s) | 110, 206 |
| Sau3AI | GATC | 3 cut(s) | 187, 210, 344 |
| SduI | GDGCHC | 1 cut(s) | 105 |
| SetI | ASST | 4 cut(s) | 60, 93, 362, 415 |
| SfaNI | GCATC | 1 cut(s) | 210 |
| SfuI | TTCGAA | 1 cut(s) | 241 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 110, 206 |
| SmlI | CTYRAG | 1 cut(s) | 414 |
| SmoI | CTYRAG | 1 cut(s) | 414 |
| Sse9I | AATT | 3 cut(s) | 29, 321, 364 |
| SsiI | CCGC | 2 cut(s) | 219, 236 |
| SspI | AATATT | 1 cut(s) | 246 |
| SspMI | CTAG | 2 cut(s) | 287, 369 |
| StyI | CCWWGG | 1 cut(s) | 264 |
| TaiI | ACGT | 2 cut(s) | 60, 93 |
| TaqI | TCGA | 1 cut(s) | 241 |
| TasI | AATT | 3 cut(s) | 29, 321, 364 |
| TfiI | GAWTC | 1 cut(s) | 173 |
| TscAI | CASTG | 1 cut(s) | 203 |
| TseFI | GTSAC | 1 cut(s) | 408 |
| Tsp45I | GTSAC | 1 cut(s) | 408 |
| TspGWI | ACGGA | 3 cut(s) | 122, 311, 357 |
| TspRI | CASTG | 1 cut(s) | 203 |
| XapI | RAATTY | 1 cut(s) | 321 |
| XbaI | TCTAGA | 1 cut(s) | 368 |
| XspI | CTAG | 2 cut(s) | 287, 369 |