Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0021366

Physical Location & Seq

Genomic Coordinates Reverse (-)

82141144 .. 82141518

Gene Structure 375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG601000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTTAGTTTCTGGTACCCCGATAGAGGAATTATTTGTGCGAAGCAAAGAGTACGACGTTCAGCAAATCTTGTGTGAAGATGTTGAGTACGTTGAGTTTGTGCTCACGGATGTGAAGAAACCCAGATTTATTTTAGTTGTTGAGAAGGACATAGTTTTTCAGAGATTGGCTGAATCAAAACTTCAGGATCATTTCCAGTGCATCATCATGATCGGCTGTGGACAACCAAGTATTGCGGTTCGAATATTCTTGAAGAAGATGACCAAGGCTTTGGATATTCTTGTGCTAGTCCTTACGGATGATAGCAATCCTCATGGACTTGGAAATTTTTTTCACATATTTATACGGATCCAGAAGCATGACCTACAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030855 GO:0031974 GO:0031981 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

124

Amino Acids

14.39

Weight (kDa)

5.76

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	43 - 107	3e-17	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0021366)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0166421
rosa_multiflora	Rmu_sc0003016.1_g000008
rosa_rugosa	Rorug02G0522800
rosa_samantha	Rh2BG601000 Rh2DG611200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	14
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	3 cut(s)	195, 343, 356
AcsI	RAATTY	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	3 cut(s)	16, 53, 89
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	253
AleI	CACNNNNGTG	1 cut(s)	110
Alw21I	GWGCWC	1 cut(s)	105
AlwI	GGATC	3 cut(s)	195, 343, 356
ApoI	RAATTY	1 cut(s)	325
ArsI	GACNNNNNNTTYG	2 cut(s)	253, 285
Asp718I	GGTACC	1 cut(s)	14
AsuII	TTCGAA	1 cut(s)	241
BamHI	GGATCC	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	105
BfaI	CTAG	2 cut(s)	287, 373
BmiI	GGNNCC	2 cut(s)	16, 350
BmsI	GCATC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	2 cut(s)	115, 304
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseNI	ACTGG	1 cut(s)	196
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	187, 210, 348
BspACI	CCGC	1 cut(s)	236
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	16, 350
BspPI	GGATC	3 cut(s)	195, 343, 356
BspT104I	TTCGAA	1 cut(s)	241
BspT107I	GGYRCC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	3 cut(s)	187, 210, 348
BssT1I	CCWWGG	1 cut(s)	264
BstBI	TTCGAA	1 cut(s)	241
BstF5I	GGATG	2 cut(s)	115, 304
BstKTI	GATC	3 cut(s)	190, 213, 351
BstMBI	GATC	3 cut(s)	187, 210, 348
BstX2I	RGATCY	1 cut(s)	348
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	115, 304
BtsIMutI	CAGTG	1 cut(s)	203
CciI	TCATGA	1 cut(s)	207
Csp6I	GTAC	3 cut(s)	15, 52, 88
CviAII	CATG	3 cut(s)	208, 314, 359
CviJI	RGCY	3 cut(s)	170, 216, 269
CviKI_1	RGCY	3 cut(s)	170, 216, 269
CviQI	GTAC	3 cut(s)	15, 52, 88
DpnI	GATC	3 cut(s)	189, 212, 350
DpnII	GATC	3 cut(s)	187, 210, 348
Eco130I	CCWWGG	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	3 cut(s)	211, 317, 362
FaiI	YATR	6 cut(s)	152, 209, 315, 338, 344, 360
FatI	CATG	3 cut(s)	207, 313, 358
FokI	GGATG	2 cut(s)	122, 311
FspBI	CTAG	2 cut(s)	287, 373
Hin1II	CATG	3 cut(s)	211, 317, 362
HinfI	GANTC	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	4 cut(s)	185, 208, 250, 352
Hpy8I	GTNNAC	1 cut(s)	221
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	139
HpyCH4IV	ACGT	2 cut(s)	57, 90
HpyCH4V	TGCA	1 cut(s)	201
HpySE526I	ACGT	2 cut(s)	57, 90
Hsp92II	CATG	3 cut(s)	211, 317, 362
KpnI	GGTACC	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	187, 210, 348
LpnPI	CCDG	4 cut(s)	136, 170, 209, 365
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	2 cut(s)	287, 373
MaeII	ACGT	2 cut(s)	57, 90
MalI	GATC	3 cut(s)	189, 212, 350
MboI	GATC	3 cut(s)	187, 210, 348
MboII	GAAGA	4 cut(s)	89, 127, 265, 268
MflI	RGATCY	1 cut(s)	348
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	3 cut(s)	29, 325, 368
MnlI	CCTC	2 cut(s)	19, 321
MslI	CAYNNNNRTG	2 cut(s)	110, 206
NdeII	GATC	3 cut(s)	187, 210, 348
NlaIII	CATG	3 cut(s)	211, 317, 362
NlaIV	GGNNCC	2 cut(s)	16, 350
NspV	TTCGAA	1 cut(s)	241
OliI	CACNNNNGTG	1 cut(s)	110
PagI	TCATGA	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	16, 350
PsuI	RGATCY	1 cut(s)	348
RsaI	GTAC	3 cut(s)	16, 53, 89
RsaNI	GTAC	3 cut(s)	15, 52, 88
RseI	CAYNNNNRTG	2 cut(s)	110, 206
Sau3AI	GATC	3 cut(s)	187, 210, 348
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	3 cut(s)	60, 93, 366
SfaNI	GCATC	1 cut(s)	210
SfuI	TTCGAA	1 cut(s)	241
SmiMI	CAYNNNNRTG	2 cut(s)	110, 206
Sse9I	AATT	3 cut(s)	29, 325, 368
SsiI	CCGC	1 cut(s)	236
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	2 cut(s)	287, 373
StyI	CCWWGG	1 cut(s)	264
TaiI	ACGT	2 cut(s)	60, 93
TaqI	TCGA	1 cut(s)	241
TasI	AATT	3 cut(s)	29, 325, 368
TfiI	GAWTC	1 cut(s)	173
TscAI	CASTG	1 cut(s)	203
TspGWI	ACGGA	3 cut(s)	122, 311, 361
TspRI	CASTG	1 cut(s)	203
XapI	RAATTY	1 cut(s)	325
XspI	CTAG	2 cut(s)	287, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.