Rmu_sc0003069.1_g000009

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003069.1
OG0014763
Physical Location & Seq
Forward (+)
46919 .. 47713
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003069.1_g000009.1.cds

Sequence Viewer

Length: 795 bp
atggctcaactctgttgttgcattctcaaacccattcctggagggttttcatggcgaaaacttcctggatggttgaaatggttggccttgtgccgctgcataatctgccacatcgttttctggtttggagctttcctactcattttctggctgatcttccttcctgacgagcctagatttactgttacgaatgcctctctaacccaattcaatttcaacggtagtgacaacaaaagcggtaccaatcttcactaccacctcgccctcaacatcaccatcagaaaccccaatagaagggtcggcattgactaccgtagcatgacagtgtctgctagctacagaaagaagaagtttggccgggtaaatttgatggattcagtaccattttaccaaggccacaagaatacaacttttttgcatcatctggtgcttcaagggcagcagcagatggtgaaattcgggaagcgtgacatctcccagtttgacagggagactgctacaacttttgtgcatcatctggtgcttcaagggcagcagcagatggtgaaattcgggaagcgtgacatctcccagtttgacagggagactgctgctggggtttatagtattactgtgcaggttacttttcgggtcaagatcaggtatggaaactttaaggccaactttttgaaaccagaaacctacgatgaccagcagatcaactgcgagctgaaactccctctaagtattactaatgagacatctgggggtggtttcaaggctacaaagtgcaacgatgttggtatattttcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

264

Amino Acids

30.36

Weight (kDa)

9.69

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 607
Acc65I GGTACC 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 239
AciI CCGC 2 cut(s) 94, 237
AcoI YGGCCR 1 cut(s) 355
AcsI RAATTY 3 cut(s) 364, 455, 548
AfaI GTAC 2 cut(s) 241, 381
AfiI CCNNNNNNNGG 2 cut(s) 38, 294
AgsI TTSAA 7 cut(s) 76, 211, 217, 434, 527, 670, 757
AjnI CCWGG 2 cut(s) 37, 64
AluBI AGCT 3 cut(s) 131, 336, 709
AluI AGCT 3 cut(s) 131, 336, 709
Alw26I GTCTC 3 cut(s) 485, 578, 731
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 4 cut(s) 84, 355, 394, 657
ApeKI GCWGC 6 cut(s) 96, 439, 442, 532, 535, 590
ApoI RAATTY 3 cut(s) 364, 455, 548
Asp718I GGTACC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 3 cut(s) 265, 463, 556
AsuNHI GCTAGC 1 cut(s) 332
BanI GGYRCC 1 cut(s) 239
BbvI GCAGC 6 cut(s) 83, 451, 454, 544, 547, 577
BccI CCATC 5 cut(s) 63, 284, 364, 442, 535
BciT130I CCWGG 2 cut(s) 39, 66
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 3 cut(s) 485, 578, 731
BfaI CTAG 2 cut(s) 174, 333
BfmI CTRYAG 1 cut(s) 337
BfuAI ACCTGC 1 cut(s) 607
BisI GCNGC 7 cut(s) 94, 97, 440, 443, 533, 536, 591
BlsI GCNGC 7 cut(s) 95, 98, 441, 444, 534, 537, 592
Bme1390I CCNGG 3 cut(s) 39, 66, 359
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 3 cut(s) 39, 66, 359
BmrI ACTGGG 2 cut(s) 472, 565
BmsI GCATC 2 cut(s) 427, 520
BmtI GCTAGC 1 cut(s) 336
BmuI ACTGGG 2 cut(s) 472, 565
BpmI CTGGAG 1 cut(s) 60
BpuMI CCSGG 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 391
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 294
Bse1I ACTGG 2 cut(s) 478, 571
BseBI CCWGG 2 cut(s) 39, 66
BseDI CCNNGG 1 cut(s) 391
BseGI GGATG 1 cut(s) 74
BseLI CCNNNNNNNGG 2 cut(s) 38, 294
BseNI ACTGG 2 cut(s) 478, 571
BseXI GCAGC 6 cut(s) 83, 451, 454, 544, 547, 577
BseYI CCCAGC 1 cut(s) 593
BsgI GTGCAG 1 cut(s) 635
BshFI GGCC 4 cut(s) 86, 357, 396, 659
BshNI GGYRCC 1 cut(s) 239
BsiSI CCGG 1 cut(s) 358
BslI CCNNNNNNNGG 2 cut(s) 38, 294
BsmAI GTCTC 3 cut(s) 485, 578, 731
BsmI GAATGC 2 cut(s) 21, 196
BsnI GGCC 4 cut(s) 86, 357, 396, 659
Bsp143I GATC 3 cut(s) 153, 636, 696
BspACI CCGC 2 cut(s) 94, 237
BspANI GGCC 4 cut(s) 86, 357, 396, 659
BspLI GGNNCC 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 607
BspOI GCTAGC 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 239
BsrI ACTGG 2 cut(s) 478, 571
BssECI CCNNGG 1 cut(s) 391
BssMI GATC 3 cut(s) 153, 636, 696
BssT1I CCWWGG 1 cut(s) 391
Bst2UI CCWGG 2 cut(s) 39, 66
Bst4CI ACNGT 5 cut(s) 184, 221, 314, 325, 613
BstAPI GCANNNNNTGC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 334, 707
BstDEI CTNAG 1 cut(s) 722
BstF5I GGATG 1 cut(s) 74
BstKTI GATC 3 cut(s) 156, 639, 699
BstMAI GTCTC 3 cut(s) 485, 578, 731
BstMBI GATC 3 cut(s) 153, 636, 696
BstMWI GCNNNNNNNGC 3 cut(s) 105, 436, 529
BstNI CCWGG 2 cut(s) 39, 66
BstSCI CCNGG 3 cut(s) 37, 64, 357
BstSFI CTRYAG 1 cut(s) 337
BstV1I GCAGC 6 cut(s) 83, 451, 454, 544, 547, 577
BsuRI GGCC 4 cut(s) 86, 357, 396, 659
BtsCI GGATG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 330
BveI ACCTGC 1 cut(s) 607
Cac8I GCNNGC 2 cut(s) 334, 707
CaiI CAGNNNCTG 1 cut(s) 329
Csp6I GTAC 2 cut(s) 240, 380
CviAII CATG 2 cut(s) 51, 319
CviQI GTAC 2 cut(s) 240, 380
DdeI CTNAG 1 cut(s) 722
DpnI GATC 3 cut(s) 155, 638, 698
DpnII GATC 3 cut(s) 153, 636, 696
EaeI YGGCCR 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 391
EcoRII CCWGG 2 cut(s) 37, 64
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 2 cut(s) 54, 322
FaiI YATR 6 cut(s) 52, 101, 320, 603, 645, 785
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FatI CATG 2 cut(s) 50, 318
Fnu4HI GCNGC 7 cut(s) 94, 97, 440, 443, 533, 536, 591
FokI GGATG 1 cut(s) 81
Fsp4HI GCNGC 7 cut(s) 94, 97, 440, 443, 533, 536, 591
FspBI CTAG 2 cut(s) 174, 333
GluI GCNGC 7 cut(s) 94, 97, 440, 443, 533, 536, 591
GsaI CCCAGC 1 cut(s) 597
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 4 cut(s) 86, 357, 396, 659
HapII CCGG 1 cut(s) 358
Hin1II CATG 2 cut(s) 54, 322
HinfI GANTC 1 cut(s) 374
HpaII CCGG 1 cut(s) 358
HphI GGTGA 3 cut(s) 265, 463, 556
Hpy188I TCNGA 1 cut(s) 281
Hpy188III TCNNGA 4 cut(s) 164, 460, 553, 634
HpyAV CCTTC 2 cut(s) 170, 288
HpyCH4III ACNGT 5 cut(s) 184, 221, 314, 325, 613
HpyCH4V TGCA 6 cut(s) 21, 99, 418, 511, 616, 771
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 436, 529
HpyF3I CTNAG 1 cut(s) 722
Hsp92II CATG 2 cut(s) 54, 322
KpnI GGTACC 1 cut(s) 243
Kzo9I GATC 3 cut(s) 153, 636, 696
LmnI GCTCC 1 cut(s) 128
Lsp1109I GCAGC 6 cut(s) 83, 451, 454, 544, 547, 577
LweI GCATC 2 cut(s) 427, 520
MaeI CTAG 2 cut(s) 174, 333
MaeIII GTNAC 5 cut(s) 184, 224, 467, 560, 619
MalI GATC 3 cut(s) 155, 638, 698
MboI GATC 3 cut(s) 153, 636, 696
MboII GAAGA 3 cut(s) 148, 239, 358
MluCI AATT 5 cut(s) 206, 211, 364, 455, 548
MnlI CCTC 5 cut(s) 35, 205, 269, 275, 729
MseI TTAA 2 cut(s) 654, 793
MslI CAYNNNNRTG 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 3 cut(s) 39, 66, 359
Mva1269I GAATGC 2 cut(s) 21, 196
MvaI CCWGG 2 cut(s) 39, 66
MwoI GCNNNNNNNGC 3 cut(s) 105, 436, 529
NciI CCSGG 1 cut(s) 359
NdeII GATC 3 cut(s) 153, 636, 696
NheI GCTAGC 1 cut(s) 332
NlaIII CATG 2 cut(s) 54, 322
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 3 cut(s) 224, 467, 560
PctI GAATGC 2 cut(s) 21, 196
PfeI GAWTC 1 cut(s) 374
PflFI GACNNNGTC 1 cut(s) 325
PfoI TCCNGGA 2 cut(s) 37, 64
PkrI GCNGC 7 cut(s) 95, 98, 441, 444, 534, 537, 592
Psp6I CCWGG 2 cut(s) 37, 64
PspFI CCCAGC 1 cut(s) 593
PspGI CCWGG 2 cut(s) 37, 64
PspN4I GGNNCC 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 329
PsyI GACNNNGTC 1 cut(s) 325
RsaI GTAC 2 cut(s) 241, 381
RsaNI GTAC 2 cut(s) 240, 380
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 2 cut(s) 654, 793
SatI GCNGC 7 cut(s) 94, 97, 440, 443, 533, 536, 591
Sau3AI GATC 3 cut(s) 153, 636, 696
ScrFI CCNGG 3 cut(s) 39, 66, 359
SetI ASST 7 cut(s) 133, 261, 338, 621, 644, 683, 711
SfaNI GCATC 2 cut(s) 427, 520
SfcI CTRYAG 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 5 cut(s) 206, 211, 364, 455, 548
SsiI CCGC 2 cut(s) 94, 237
SspMI CTAG 2 cut(s) 174, 333
StyD4I CCNGG 3 cut(s) 37, 64, 357
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 5 cut(s) 184, 221, 314, 325, 613
TasI AATT 5 cut(s) 206, 211, 364, 455, 548
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 654, 793
Tru9I TTAA 2 cut(s) 654, 793
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 3 cut(s) 224, 467, 560
TseI GCWGC 6 cut(s) 96, 439, 442, 532, 535, 590
Tsp45I GTSAC 3 cut(s) 224, 467, 560
TspDTI ATGAA 1 cut(s) 39
TspRI CASTG 1 cut(s) 330
Tth111I GACNNNGTC 1 cut(s) 325
XapI RAATTY 3 cut(s) 364, 455, 548
XspI CTAG 2 cut(s) 174, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.