Rw3G015910

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0014763
Physical Location & Seq
Forward (+)
16480319 .. 16481227
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G015910.1

Sequence Viewer

Length: 702 bp
ATGGCTCAACTCTGTTGTTGCATTCTCAAACCCATTCCTGGAGGCTTTTCATGGCGAAAACTTCCTGGATGGTTGAAATGGTTAGCCTTGTGCCGCTGCATAATCTGCCACATCATTTTCTGGTTTGGAGCTTTCCTACTCATTTTCTGGCTGATCTTCCTTCCTGACGAGCCTAGATTTACTGTTACGAATGCCTCTCTAACCCAATTCAATTTCAGCGGTAGTGACAACGAAAGCGGTACCAATCTTCACTACCACCTCGCCCTCAACATCACCATCAGAAACCCCAATAGAAGGGTCGGCATTGACTACCGTAGCATGACAGTGTCTGCTAGCTACAGAAAGAAGAAGTTTGGCCTCGTCAATTTGATGGATTCAGTACCATTTTACCAAGGCCACAAGAACACAACTTTTTTGCATCATCTGGTGCTTCAAGGGCAGCAGCAGTTGGTGAAATTCGGGAAGCGAGACATCTCCCAGTTTGACAAGGAGACTGCTGCTGGGGTTTATAATATTACTGTGCAGGTTACTTTTCGGGTCAAGATCAGGTATGGAAAGTTTAAGGCCGACTTTTTAAAACCAGAAACCTACGATGACCAGCAGATCAACTGCGAGCTGAAACTTCCTATAAGTATTACTAATGAGACATCTGGGGGTGGTTTCAAGGCTACAAAGTGCGGCGATGTTGGTATATTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

233

Amino Acids

26.62

Weight (kDa)

9.43

Isoelectric Point (pI)

30.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 91 - 186 5.2e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 510
Acc36I ACCTGC 1 cut(s) 514
Acc65I GGTACC 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 239
AciI CCGC 4 cut(s) 94, 219, 237, 678
AcsI RAATTY 1 cut(s) 455
AfaI GTAC 2 cut(s) 241, 381
AfiI CCNNNNNNNGG 2 cut(s) 38, 294
AgsI TTSAA 4 cut(s) 76, 211, 434, 664
AjnI CCWGG 2 cut(s) 37, 64
AluBI AGCT 3 cut(s) 131, 336, 616
AluI AGCT 3 cut(s) 131, 336, 616
Alw26I GTCTC 3 cut(s) 462, 485, 638
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 3 cut(s) 355, 394, 564
ApeKI GCWGC 4 cut(s) 96, 439, 442, 497
ApoI RAATTY 1 cut(s) 455
Asp718I GGTACC 1 cut(s) 239
AsuHPI GGTGA 2 cut(s) 265, 463
AsuNHI GCTAGC 1 cut(s) 332
BanI GGYRCC 1 cut(s) 239
BbvI GCAGC 4 cut(s) 83, 451, 454, 484
BccI CCATC 3 cut(s) 63, 284, 364
BciT130I CCWGG 2 cut(s) 39, 66
BcoDI GTCTC 3 cut(s) 462, 485, 638
BfaI CTAG 2 cut(s) 174, 333
BfmI CTRYAG 1 cut(s) 337
BfuAI ACCTGC 1 cut(s) 514
BisI GCNGC 6 cut(s) 94, 97, 440, 443, 498, 679
BlsI GCNGC 6 cut(s) 95, 98, 441, 444, 499, 680
Bme1390I CCNGG 2 cut(s) 39, 66
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 2 cut(s) 39, 66
BmrI ACTGGG 1 cut(s) 472
BmsI GCATC 1 cut(s) 427
BmtI GCTAGC 1 cut(s) 336
BmuI ACTGGG 1 cut(s) 472
BpmI CTGGAG 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 391
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 294
Bse1I ACTGG 1 cut(s) 478
BseBI CCWGG 2 cut(s) 39, 66
BseDI CCNNGG 1 cut(s) 391
BseGI GGATG 1 cut(s) 74
BseLI CCNNNNNNNGG 2 cut(s) 38, 294
BseNI ACTGG 1 cut(s) 478
BseXI GCAGC 4 cut(s) 83, 451, 454, 484
BseYI CCCAGC 1 cut(s) 500
BsgI GTGCAG 1 cut(s) 542
BshFI GGCC 3 cut(s) 357, 396, 566
BshNI GGYRCC 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 38, 294
BsmAI GTCTC 3 cut(s) 462, 485, 638
BsmI GAATGC 2 cut(s) 21, 196
BsnI GGCC 3 cut(s) 357, 396, 566
Bsp143I GATC 3 cut(s) 153, 543, 603
BspACI CCGC 4 cut(s) 94, 219, 237, 678
BspANI GGCC 3 cut(s) 357, 396, 566
BspLI GGNNCC 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 514
BspOI GCTAGC 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 239
BsrI ACTGG 1 cut(s) 478
BssECI CCNNGG 1 cut(s) 391
BssMI GATC 3 cut(s) 153, 543, 603
BssT1I CCWWGG 1 cut(s) 391
Bst2UI CCWGG 2 cut(s) 39, 66
Bst4CI ACNGT 4 cut(s) 184, 314, 325, 520
BstAPI GCANNNNNTGC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 334, 614
BstF5I GGATG 1 cut(s) 74
BstKTI GATC 3 cut(s) 156, 546, 606
BstMAI GTCTC 3 cut(s) 462, 485, 638
BstMBI GATC 3 cut(s) 153, 543, 603
BstMWI GCNNNNNNNGC 2 cut(s) 105, 436
BstNI CCWGG 2 cut(s) 39, 66
BstSCI CCNGG 2 cut(s) 37, 64
BstSFI CTRYAG 1 cut(s) 337
BstV1I GCAGC 4 cut(s) 83, 451, 454, 484
BsuRI GGCC 3 cut(s) 357, 396, 566
BtgZI GCGATG 1 cut(s) 696
BtsCI GGATG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 330
BveI ACCTGC 1 cut(s) 514
Cac8I GCNNGC 2 cut(s) 334, 614
CaiI CAGNNNCTG 1 cut(s) 329
Csp6I GTAC 2 cut(s) 240, 380
CviAII CATG 2 cut(s) 51, 319
CviQI GTAC 2 cut(s) 240, 380
DpnI GATC 3 cut(s) 155, 545, 605
DpnII GATC 3 cut(s) 153, 543, 603
DraI TTTAAA 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 391
EcoRII CCWGG 2 cut(s) 37, 64
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 2 cut(s) 54, 322
FaiI YATR 7 cut(s) 52, 101, 320, 510, 552, 629, 692
FalI AAGNNNNNCTT 2 cut(s) 554, 586
FatI CATG 2 cut(s) 50, 318
Fnu4HI GCNGC 6 cut(s) 94, 97, 440, 443, 498, 679
FokI GGATG 1 cut(s) 81
Fsp4HI GCNGC 6 cut(s) 94, 97, 440, 443, 498, 679
FspBI CTAG 2 cut(s) 174, 333
GluI GCNGC 6 cut(s) 94, 97, 440, 443, 498, 679
GsaI CCCAGC 1 cut(s) 504
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 3 cut(s) 357, 396, 566
Hin1II CATG 2 cut(s) 54, 322
HinfI GANTC 1 cut(s) 374
HphI GGTGA 2 cut(s) 265, 463
Hpy188I TCNGA 1 cut(s) 281
Hpy188III TCNNGA 3 cut(s) 164, 460, 541
HpyAV CCTTC 2 cut(s) 170, 288
HpyCH4III ACNGT 4 cut(s) 184, 314, 325, 520
HpyCH4V TGCA 4 cut(s) 21, 99, 418, 523
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 436
Hsp92II CATG 2 cut(s) 54, 322
KpnI GGTACC 1 cut(s) 243
Kzo9I GATC 3 cut(s) 153, 543, 603
LmnI GCTCC 1 cut(s) 128
Lsp1109I GCAGC 4 cut(s) 83, 451, 454, 484
LweI GCATC 1 cut(s) 427
MaeI CTAG 2 cut(s) 174, 333
MaeIII GTNAC 3 cut(s) 184, 224, 526
MalI GATC 3 cut(s) 155, 545, 605
MboI GATC 3 cut(s) 153, 543, 603
MboII GAAGA 3 cut(s) 148, 239, 358
MluCI AATT 4 cut(s) 206, 211, 364, 455
MnlI CCTC 5 cut(s) 35, 205, 269, 275, 368
MseI TTAA 3 cut(s) 561, 575, 700
MslI CAYNNNNRTG 1 cut(s) 323
MspA1I CMGCKG 2 cut(s) 96, 219
MspR9I CCNGG 2 cut(s) 39, 66
Mva1269I GAATGC 2 cut(s) 21, 196
MvaI CCWGG 2 cut(s) 39, 66
MwoI GCNNNNNNNGC 2 cut(s) 105, 436
NdeII GATC 3 cut(s) 153, 543, 603
NheI GCTAGC 1 cut(s) 332
NlaIII CATG 2 cut(s) 54, 322
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 224
PctI GAATGC 2 cut(s) 21, 196
PfeI GAWTC 1 cut(s) 374
PflFI GACNNNGTC 1 cut(s) 325
PfoI TCCNGGA 2 cut(s) 37, 64
PkrI GCNGC 6 cut(s) 95, 98, 441, 444, 499, 680
PsiI TTATAA 1 cut(s) 510
Psp6I CCWGG 2 cut(s) 37, 64
PspFI CCCAGC 1 cut(s) 500
PspGI CCWGG 2 cut(s) 37, 64
PspN4I GGNNCC 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 329
PsyI GACNNNGTC 1 cut(s) 325
RsaI GTAC 2 cut(s) 241, 381
RsaNI GTAC 2 cut(s) 240, 380
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 3 cut(s) 561, 575, 700
SatI GCNGC 6 cut(s) 94, 97, 440, 443, 498, 679
Sau3AI GATC 3 cut(s) 153, 543, 603
ScrFI CCNGG 2 cut(s) 39, 66
SetI ASST 7 cut(s) 133, 261, 338, 528, 551, 590, 618
SfaNI GCATC 1 cut(s) 427
SfcI CTRYAG 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 4 cut(s) 206, 211, 364, 455
SsiI CCGC 4 cut(s) 94, 219, 237, 678
SspI AATATT 1 cut(s) 514
SspMI CTAG 2 cut(s) 174, 333
StyD4I CCNGG 2 cut(s) 37, 64
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 4 cut(s) 184, 314, 325, 520
TasI AATT 4 cut(s) 206, 211, 364, 455
TauI GCSGC 2 cut(s) 96, 681
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 3 cut(s) 561, 575, 700
Tru9I TTAA 3 cut(s) 561, 575, 700
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 4 cut(s) 96, 439, 442, 497
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 39
TspRI CASTG 1 cut(s) 330
Tth111I GACNNNGTC 1 cut(s) 325
XapI RAATTY 1 cut(s) 455
XspI CTAG 2 cut(s) 174, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.