Rmu_sc0003071.1_g000006

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003071.1
OG0023093
Physical Location & Seq
Forward (+)
15404 .. 16732
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003071.1_g000006.1.cds

Sequence Viewer

Length: 741 bp
atggttggtcacttgcttggaccgaaggctaggtttccaggcttcaagggcaccatacttacgatatggcaagtcaaatctgggctttctatccctgatgtcggagatcgtttcttattccaatttgatcttgaagctgatcgtaatcgagctcttcatggaagaccttcgttttataggaacacgatgctggtggttggtgaatatgatggtgtaagttcgttggaggtcatcccgctgaggatgatggagacctggatggcagtcaaaggtttgcccgtggcgctaaggaacaaggtagctctgactttggtaggttcctttattggacaggtgataggcttcgatcagctggcgctctgtcgtaaggaggaagaacaatgtattagactggtttttgacactcgccggagggcttctgccaggattatgggttgttcgagcacgacatctcaagttgtgatggattcttgtgaaggagaaggaagaattacaaagcaggccaccgccagtggcattggctgggttgtcactctttacagtaccggcatccaaagctgttgtaggggtgagccttcgtcctcgatgctccataaggactcaacccgactaggtttgaaaactaacactactagaattatggccccagacatcggccaaaaaccgatgagaaacaaaaacccgaccgatgtctttgtgggtgatgagaaagatccggaaaatgcagacatcggtttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

246

Amino Acids

27.14

Weight (kDa)

8.94

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023093)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8445381.1_g000001 Rmu_sc0003071.1_g000006 Rmu_sc0005193.1_g000004 Rmu_sc0009033.1_g000011

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AccIII TCCGGA 1 cut(s) 715
AciI CCGC 2 cut(s) 236, 507
AclWI GGATC 1 cut(s) 707
AcoI YGGCCR 1 cut(s) 655
AfaI GTAC 1 cut(s) 544
AfiI CCNNNNNNNGG 2 cut(s) 101, 653
AgsI TTSAA 3 cut(s) 46, 134, 619
AjnI CCWGG 3 cut(s) 37, 254, 422
AluBI AGCT 5 cut(s) 137, 152, 302, 352, 558
AluI AGCT 5 cut(s) 137, 152, 302, 352, 558
Alw21I GWGCWC 2 cut(s) 154, 446
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 1 cut(s) 707
Aor13HI TCCGGA 1 cut(s) 715
AoxI GGCC 3 cut(s) 501, 642, 655
Asp700I GAANNNNTTC 1 cut(s) 166
AspLEI GCGC 2 cut(s) 286, 358
AspS9I GGNCC 2 cut(s) 20, 643
AsuHPI GGTGA 4 cut(s) 212, 346, 581, 713
AvaII GGWCC 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 53
BanI GGYRCC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 154
BbsI GAAGAC 1 cut(s) 169
Bbv12I GWGCWC 2 cut(s) 154, 446
BbvCI CCTCAGC 1 cut(s) 239
BccI CCATC 4 cut(s) 203, 241, 253, 457
BciT130I CCWGG 3 cut(s) 39, 256, 424
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 3 cut(s) 30, 611, 633
BfoI RGCGCY 2 cut(s) 287, 359
Bme1390I CCNGG 3 cut(s) 39, 256, 424
Bme18I GGWCC 1 cut(s) 20
BmgT120I GGNCC 2 cut(s) 20, 643
BmiI GGNNCC 3 cut(s) 52, 319, 645
BmrFI CCNGG 3 cut(s) 39, 256, 424
BmsI GCATC 3 cut(s) 177, 558, 576
BoxI GACNNNNGTC 1 cut(s) 689
BpiI GAAGAC 1 cut(s) 169
Bpu10I CCTNAGC 2 cut(s) 239, 287
BpuEI CTTGAG 1 cut(s) 438
BsaBI GATNNNNATC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 279
BsaWI WCCGGW 1 cut(s) 715
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 653
Bse118I RCCGGY 1 cut(s) 545
Bse1I ACTGG 2 cut(s) 396, 510
Bse8I GATNNNNATC 1 cut(s) 144
BseAI TCCGGA 1 cut(s) 715
BseBI CCWGG 3 cut(s) 39, 256, 424
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 4 cut(s) 231, 249, 264, 549
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 2 cut(s) 101, 653
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 2 cut(s) 396, 510
BseSI GKGCMC 1 cut(s) 53
BseYI CCCAGC 1 cut(s) 522
Bsh1285I CGRYCG 1 cut(s) 687
BshFI GGCC 3 cut(s) 503, 644, 657
BshNI GGYRCC 1 cut(s) 50
BsiEI CGRYCG 1 cut(s) 687
BsiHKAI GWGCWC 2 cut(s) 154, 446
BsiSI CCGG 3 cut(s) 409, 546, 716
BslI CCNNNNNNNGG 2 cut(s) 101, 653
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 3 cut(s) 503, 644, 657
Bso31I GGTCTC 1 cut(s) 245
Bsp1286I GDGCHC 3 cut(s) 53, 154, 446
Bsp13I TCCGGA 1 cut(s) 715
Bsp143I GATC 5 cut(s) 106, 127, 139, 346, 712
BspACI CCGC 2 cut(s) 236, 507
BspANI GGCC 3 cut(s) 503, 644, 657
BspCNI CTCAG 1 cut(s) 231
BspEI TCCGGA 1 cut(s) 715
BspLI GGNNCC 3 cut(s) 52, 319, 645
BspPI GGATC 1 cut(s) 707
BspQI GCTCTTC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 245
BsrFI RCCGGY 1 cut(s) 545
BsrI ACTGG 2 cut(s) 396, 510
BssAI RCCGGY 1 cut(s) 545
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 5 cut(s) 106, 127, 139, 346, 712
Bst2UI CCWGG 3 cut(s) 39, 256, 424
Bst4CI ACNGT 1 cut(s) 542
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 2 cut(s) 354, 501
BstDEI CTNAG 2 cut(s) 239, 287
BstDSI CCRYGG 1 cut(s) 279
BstF5I GGATG 4 cut(s) 231, 249, 264, 549
BstH2I RGCGCY 2 cut(s) 287, 359
BstHHI GCGC 2 cut(s) 286, 358
BstKTI GATC 5 cut(s) 109, 130, 142, 349, 715
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 5 cut(s) 106, 127, 139, 346, 712
BstMCI CGRYCG 1 cut(s) 687
BstMWI GCNNNNNNNGC 3 cut(s) 48, 283, 555
BstNI CCWGG 3 cut(s) 39, 256, 424
BstPAI GACNNNNGTC 1 cut(s) 689
BstSCI CCNGG 3 cut(s) 37, 254, 422
BstSLI GKGCMC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 712
BstXI CCANNNNNNTGG 1 cut(s) 430
BstYI RGATCY 1 cut(s) 712
BsuRI GGCC 3 cut(s) 503, 644, 657
BtgI CCRYGG 1 cut(s) 279
BtsCI GGATG 4 cut(s) 231, 249, 264, 549
BtsIMutI CAGTG 1 cut(s) 517
Cac8I GCNNGC 2 cut(s) 354, 501
CfoI GCGC 2 cut(s) 286, 358
Cfr10I RCCGGY 1 cut(s) 545
Cfr13I GGNCC 2 cut(s) 20, 643
Csp6I GTAC 1 cut(s) 543
CviAII CATG 1 cut(s) 158
CviQI GTAC 1 cut(s) 543
DdeI CTNAG 2 cut(s) 239, 287
DpnI GATC 5 cut(s) 108, 129, 141, 348, 714
DpnII GATC 5 cut(s) 106, 127, 139, 346, 712
EaeI YGGCCR 1 cut(s) 655
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 152
EcoRII CCWGG 3 cut(s) 37, 254, 422
EcoT38I GRGCYC 1 cut(s) 154
FaeI CATG 1 cut(s) 161
FaiI YATR 8 cut(s) 56, 67, 159, 177, 207, 431, 594, 641
FatI CATG 1 cut(s) 157
FauI CCCGC 1 cut(s) 243
FokI GGATG 4 cut(s) 218, 256, 271, 536
FriOI GRGCYC 1 cut(s) 154
FspBI CTAG 3 cut(s) 30, 611, 633
GlaI GCGC 2 cut(s) 285, 357
GsaI CCCAGC 1 cut(s) 526
HaeII RGCGCY 2 cut(s) 287, 359
HaeIII GGCC 3 cut(s) 503, 644, 657
HapII CCGG 3 cut(s) 409, 546, 716
HhaI GCGC 2 cut(s) 286, 358
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 2 cut(s) 284, 356
HinP1I GCGC 2 cut(s) 284, 356
HinfI GANTC 2 cut(s) 467, 599
HpaII CCGG 3 cut(s) 409, 546, 716
HphI GGTGA 4 cut(s) 212, 346, 581, 713
Hpy188I TCNGA 2 cut(s) 104, 306
Hpy188III TCNNGA 2 cut(s) 131, 716
HpyAV CCTTC 5 cut(s) 19, 177, 470, 476, 585
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4V TGCA 1 cut(s) 725
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 283, 555
HpyF3I CTNAG 2 cut(s) 239, 287
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 2 cut(s) 284, 356
Kpn2I TCCGGA 1 cut(s) 715
Kzo9I GATC 5 cut(s) 106, 127, 139, 346, 712
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 594
LweI GCATC 3 cut(s) 177, 558, 576
MaeI CTAG 3 cut(s) 30, 611, 633
MaeIII GTNAC 2 cut(s) 8, 529
MalI GATC 5 cut(s) 108, 129, 141, 348, 714
MboI GATC 5 cut(s) 106, 127, 139, 346, 712
MboII GAAGA 4 cut(s) 146, 174, 386, 498
MflI RGATCY 1 cut(s) 712
MhlI GDGCHC 3 cut(s) 53, 154, 446
MluCI AATT 3 cut(s) 122, 489, 636
MlyI GAGTC 1 cut(s) 593
MmeI TCCRAC 2 cut(s) 82, 204
MnlI CCTC 5 cut(s) 220, 234, 364, 405, 592
MroI TCCGGA 1 cut(s) 715
MroXI GAANNNNTTC 1 cut(s) 166
MspA1I CMGCKG 2 cut(s) 238, 352
MspI CCGG 3 cut(s) 409, 546, 716
MspR9I CCNGG 3 cut(s) 39, 256, 424
MvaI CCWGG 3 cut(s) 39, 256, 424
MwoI GCNNNNNNNGC 3 cut(s) 48, 283, 555
NdeII GATC 5 cut(s) 106, 127, 139, 346, 712
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 3 cut(s) 52, 319, 645
NmuCI GTSAC 2 cut(s) 8, 529
PciSI GCTCTTC 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 467
PleI GAGTC 1 cut(s) 593
PpsI GAGTC 1 cut(s) 593
PshAI GACNNNNGTC 1 cut(s) 689
Psp124BI GAGCTC 1 cut(s) 154
Psp6I CCWGG 3 cut(s) 37, 254, 422
PspFI CCCAGC 1 cut(s) 522
PspGI CCWGG 3 cut(s) 37, 254, 422
PspN4I GGNNCC 3 cut(s) 52, 319, 645
PspPI GGNCC 2 cut(s) 20, 643
PsuI RGATCY 1 cut(s) 712
PvuII CAGCTG 1 cut(s) 352
RsaI GTAC 1 cut(s) 544
RsaNI GTAC 1 cut(s) 543
SacI GAGCTC 1 cut(s) 154
SapI GCTCTTC 1 cut(s) 159
Sau3AI GATC 5 cut(s) 106, 127, 139, 346, 712
Sau96I GGNCC 2 cut(s) 20, 643
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 3 cut(s) 39, 256, 424
SduI GDGCHC 3 cut(s) 53, 154, 446
SfaNI GCATC 3 cut(s) 177, 558, 576
SinI GGWCC 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
Sse9I AATT 3 cut(s) 122, 489, 636
SsiI CCGC 2 cut(s) 236, 507
SspMI CTAG 3 cut(s) 30, 611, 633
SstI GAGCTC 1 cut(s) 154
StyD4I CCNGG 3 cut(s) 37, 254, 422
TaaI ACNGT 1 cut(s) 542
TaqI TCGA 4 cut(s) 148, 345, 440, 584
TaqII GACCGA 2 cut(s) 37, 701
TasI AATT 3 cut(s) 122, 489, 636
TfiI GAWTC 1 cut(s) 467
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 2 cut(s) 8, 529
Tsp45I GTSAC 2 cut(s) 8, 529
TspDTI ATGAA 1 cut(s) 146
TspRI CASTG 1 cut(s) 517
VpaK11BI GGWCC 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 166
XspI CTAG 3 cut(s) 30, 611, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.