Rmu_sc0005193.1_g000004

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005193.1
OG0023093
Physical Location & Seq
Forward (+)
14344 .. 14664
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005193.1_g000004.1.cds

Sequence Viewer

Length: 321 bp
atgcgtcaaggactctttgtgcatgctgtgggggagagatttgtattccaatttgatcatgaatcagattggaatatatacctcaacagtggtccctggttttatagtagtgccatgcttgtggtggtgccgtatgatggggtgccggccatccactacgttcctcttcactccatggagatctggatggcagttcgtggattgccacagaagctgcgcaacaagtttaccttgtccatgactagatctactaccggggaagtggtgaagttcaatcaggtggctctgcgtcgcaaggatgacaacatatccggctggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

106

Amino Acids

12.32

Weight (kDa)

9.15

Isoelectric Point (pI)

62.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023093)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8445381.1_g000001 Rmu_sc0003071.1_g000006 Rmu_sc0005193.1_g000004 Rmu_sc0009033.1_g000011

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 218
AccB1I GGYRCC 2 cut(s) 127, 142
AcoI YGGCCR 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
AlwNI CAGNNNCTG 1 cut(s) 214
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 214
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 1 cut(s) 277
AvaII GGWCC 1 cut(s) 92
BanI GGYRCC 2 cut(s) 127, 142
BbvI GCAGC 1 cut(s) 201
BccI CCATC 3 cut(s) 131, 158, 181
BceAI ACGGC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 1 cut(s) 55
BcnI CCSGG 1 cut(s) 256
BfaI CTAG 1 cut(s) 243
BglII AGATCT 2 cut(s) 180, 245
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
Bme1390I CCNGG 2 cut(s) 97, 256
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 3 cut(s) 94, 129, 144
BmrFI CCNGG 2 cut(s) 97, 256
BpuMI CCSGG 1 cut(s) 256
BsaJI CCNNGG 3 cut(s) 95, 174, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 145
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 3 cut(s) 95, 174, 255
BseGI GGATG 3 cut(s) 150, 192, 304
BseLI CCNNNNNNNGG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 201
BshFI GGCC 1 cut(s) 149
BshNI GGYRCC 2 cut(s) 127, 142
BsiSI CCGG 3 cut(s) 146, 255, 312
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 1 cut(s) 149
Bsp143I GATC 3 cut(s) 55, 180, 245
Bsp19I CCATGG 1 cut(s) 174
BspANI GGCC 1 cut(s) 149
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 3 cut(s) 94, 129, 144
BspT107I GGYRCC 2 cut(s) 127, 142
BsrFI RCCGGY 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 3 cut(s) 95, 174, 255
BssMI GATC 3 cut(s) 55, 180, 245
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 2 cut(s) 24, 147
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 3 cut(s) 150, 192, 304
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 3 cut(s) 58, 183, 248
BstMBI GATC 3 cut(s) 55, 180, 245
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 2 cut(s) 95, 254
BstV1I GCAGC 1 cut(s) 201
BstX2I RGATCY 2 cut(s) 180, 245
BstXI CCANNNNNNTGG 1 cut(s) 121
BstYI RGATCY 2 cut(s) 180, 245
BsuRI GGCC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 3 cut(s) 150, 192, 304
BtsIMutI CAGTG 1 cut(s) 94
Cac8I GCNNGC 2 cut(s) 24, 147
CaiI CAGNNNCTG 1 cut(s) 214
CciI TCATGA 1 cut(s) 58
CfoI GCGC 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 92
CseI GACGC 1 cut(s) 278
CviAII CATG 5 cut(s) 23, 59, 115, 175, 238
CviJI RGCY 4 cut(s) 149, 214, 284, 315
CviKI_1 RGCY 4 cut(s) 149, 214, 284, 315
DpnI GATC 3 cut(s) 57, 182, 247
DpnII GATC 3 cut(s) 55, 180, 245
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 5 cut(s) 26, 62, 118, 178, 241
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FaqI GGGAC 1 cut(s) 78
FatI CATG 5 cut(s) 22, 58, 114, 174, 237
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 3 cut(s) 137, 199, 311
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 1 cut(s) 243
FspI TGCGCA 1 cut(s) 218
GlaI GCGC 1 cut(s) 218
GluI GCNGC 1 cut(s) 215
HaeIII GGCC 1 cut(s) 149
HapII CCGG 3 cut(s) 146, 255, 312
HgaI GACGC 1 cut(s) 278
HhaI GCGC 1 cut(s) 219
Hin1II CATG 5 cut(s) 26, 62, 118, 178, 241
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HinfI GANTC 2 cut(s) 12, 62
HpaII CCGG 3 cut(s) 146, 255, 312
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 2 cut(s) 59, 184
Hpy8I GTNNAC 1 cut(s) 228
Hpy99I CGWCG 1 cut(s) 294
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 5 cut(s) 26, 62, 118, 178, 241
HspAI GCGC 1 cut(s) 217
KroI GCCGGC 1 cut(s) 145
KroNI GCCGGC 1 cut(s) 147
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 3 cut(s) 55, 180, 245
LpnPI CCDG 7 cut(s) 82, 109, 159, 169, 263, 268, 301
Lsp1109I GCAGC 1 cut(s) 201
MaeI CTAG 1 cut(s) 243
MaeII ACGT 1 cut(s) 159
MalI GATC 3 cut(s) 57, 182, 247
MboI GATC 3 cut(s) 55, 180, 245
MboII GAAGA 1 cut(s) 158
MflI RGATCY 2 cut(s) 180, 245
MluCI AATT 1 cut(s) 50
MlyI GAGTC 1 cut(s) 6
MnlI CCTC 2 cut(s) 92, 174
MroNI GCCGGC 1 cut(s) 145
MslI CAYNNNNRTG 1 cut(s) 119
MspI CCGG 3 cut(s) 146, 255, 312
MspR9I CCNGG 2 cut(s) 97, 256
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 211
NaeI GCCGGC 1 cut(s) 147
NciI CCSGG 1 cut(s) 256
NcoI CCATGG 1 cut(s) 174
NdeII GATC 3 cut(s) 55, 180, 245
NgoMIV GCCGGC 1 cut(s) 145
NlaIII CATG 5 cut(s) 26, 62, 118, 178, 241
NlaIV GGNNCC 3 cut(s) 94, 129, 144
NsbI TGCGCA 1 cut(s) 218
NspI RCATGY 1 cut(s) 26
PaeI GCATGC 1 cut(s) 26
PagI TCATGA 1 cut(s) 58
PdiI GCCGGC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 1 cut(s) 216
PleI GAGTC 1 cut(s) 6
PpsI GAGTC 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 3 cut(s) 94, 129, 144
PspPI GGNCC 1 cut(s) 92
PstNI CAGNNNCTG 1 cut(s) 214
PsuI RGATCY 2 cut(s) 180, 245
RseI CAYNNNNRTG 1 cut(s) 119
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 3 cut(s) 55, 180, 245
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 1 cut(s) 6
ScrFI CCNGG 2 cut(s) 97, 256
SetI ASST 5 cut(s) 84, 162, 216, 233, 282
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 119
SphI GCATGC 1 cut(s) 26
Sse9I AATT 1 cut(s) 50
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 95, 254
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 1 cut(s) 162
TasI AATT 1 cut(s) 50
TfiI GAWTC 1 cut(s) 62
TscAI CASTG 1 cut(s) 94
TseI GCWGC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 92
XceI RCATGY 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.