Rmu_sc0003113.1_g000008

ARF guanine-nucleotide exchange factor GNOM-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003113.1
OG0020707
Physical Location & Seq
Forward (+)
26319 .. 29165
2847 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1158 bp
atgatcggagccgatcattttaaccgtgacccaaagaaagggttggagttcctccaaggaactcatctcttgcctgaaaaacttgatcctcaaagtgtggcctgcttttttaggtatacagctgggctagacaagaatcttgttagggatttcttgggaaatcatgacgagttttgtgttcaggttcttcacaaatttgctggcacctttgatttccaagatatgaatttggatactacacttcgccttttcttggagactttttgtttgcctagagaatcacaaaagatacaaagggttcttgaagcattctcagagatatactacgagcaatcacctctaattctagcaaacaaggatgctgctcttctgttatcatattcaatcataatgctcaatacagatcagcacaatgttcagctttatcactcaatatgcaagaatgagattcgcactactccagaacaaggtgctggttatcctgagatgaccccaagccggtggattgatttgatgcacaaatccaagaaaaatgctccattcattgtatctgattccagagcctacctagaccatgatatgtttgctataatgtctggccctacaattgctgccatctttgtggtatttgatcatgcagaacatgaagaggtttatcaaacatgcattaatggatttttagctattgcaaagatttcagcatgccaccatcttgaagatgtactagatgatttggttgtgtctcgctgtaagttcacaactttgttaaacccatcatcagttgaggaacatgtgctagcctttggtgacgacacaaaagctatgatgtcaattgtgacagtcttcaccattgccaataggtatggtgattatattcgcaccggttggagaaatattttgtggggaggatttccggcgagctactgttcaccttcgaatttctcctctaccggaggaggaagagaggaagcttcgatggccgacgacgagtccaactggggtccggctacgggaagtggagcatcgcaaacttccaatgcgacaccagctaggtctagcaccggaacaacaccaactgctacaagtgaatctgctgcaccgcttatgcttcctcccccaccaccttctgcagctggaacttggaagttggaactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000281 GO:0000578 GO:0000902 GO:0000910 GO:0000911 GO:0001736 GO:0001738 GO:0002009 GO:0003006 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007049 GO:0007155 GO:0007164 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009826 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009942 GO:0009987 GO:0010008 GO:0010015 GO:0010053 GO:0010054 GO:0010087 GO:0010101 GO:0010102 GO:0010154 GO:0010274 GO:0010311 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016197 GO:0019899 GO:0021700 GO:0022402 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032509 GO:0032879 GO:0032989 GO:0040007 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046907 GO:0046983 GO:0048209 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048729 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0060341 GO:0060429 GO:0060560 GO:0060627 GO:0060918 GO:0061458 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0071554 GO:0071555 GO:0071695 GO:0071840 GO:0071944 GO:0071985 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0097708 GO:0098588 GO:0098657 GO:0098772 GO:0098791 GO:0098805 GO:0099402 GO:1902410 GO:1903047 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Sec7 Sec7_N

Protein Analysis

385

Amino Acids

42.7

Weight (kDa)

5.2

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7 PF01369 3 - 142 1.9e-48 Sec7 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020707)

Species Orthologous Gene IDs
rosa_laevigata RLG00000034470
rosa_multiflora Rmu_sc0000222.1_g000003 Rmu_sc0003113.1_g000008
rosa_samantha Rh2AG508300 Rh2CG493800
rosa_wichuraiana Rw7G035390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 116
AciI CCGC 1 cut(s) 1100
AclWI GGATC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 978
AcsI RAATTY 3 cut(s) 194, 226, 937
AfaI GTAC 1 cut(s) 723
AfiI CCNNNNNNNGG 5 cut(s) 38, 253, 467, 498, 1010
AflIII ACRYGT 1 cut(s) 790
AgeI ACCGGT 1 cut(s) 881
AgsI TTSAA 3 cut(s) 305, 384, 716
AhdI GACNNNNNGTC 1 cut(s) 988
AluBI AGCT 8 cut(s) 122, 421, 683, 821, 921, 971, 1049, 1133
AluI AGCT 8 cut(s) 122, 421, 683, 821, 921, 971, 1049, 1133
Alw26I GTCTC 2 cut(s) 251, 747
AlwI GGATC 1 cut(s) 80
AoxI GGCC 3 cut(s) 99, 598, 978
ApeKI GCWGC 4 cut(s) 362, 611, 1094, 1130
ApoI RAATTY 3 cut(s) 194, 226, 937
ArsI GACNNNNNNTTYG 2 cut(s) 250, 282
AseI ATTAAT 1 cut(s) 669
AsiGI ACCGGT 1 cut(s) 881
AspS9I GGNCC 2 cut(s) 599, 1001
AsuHPI GGTGA 5 cut(s) 327, 818, 838, 878, 921
AsuII TTCGAA 1 cut(s) 935
AsuNHI GCTAGC 1 cut(s) 796
AvaII GGWCC 1 cut(s) 1001
BanI GGYRCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 835
BbvI GCAGC 4 cut(s) 349, 598, 1081, 1142
BccI CCATC 4 cut(s) 623, 717, 781, 970
BciVI GTATCC 1 cut(s) 226
BclI TGATCA 1 cut(s) 631
BcoDI GTCTC 2 cut(s) 251, 747
BfaI CTAG 8 cut(s) 128, 273, 347, 569, 725, 797, 1050, 1056
BfmI CTRYAG 1 cut(s) 1128
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 4 cut(s) 363, 612, 1095, 1131
BlsI GCNGC 4 cut(s) 364, 613, 1096, 1132
Bme18I GGWCC 1 cut(s) 1001
BmeRI GACNNNNNGTC 1 cut(s) 988
BmgT120I GGNCC 2 cut(s) 599, 1001
BmiI GGNNCC 3 cut(s) 10, 205, 1002
BmrI ACTGGG 1 cut(s) 1006
BmsI GCATC 3 cut(s) 349, 504, 1031
BmtI GCTAGC 1 cut(s) 800
BmuI ACTGGG 1 cut(s) 1006
BpiI GAAGAC 1 cut(s) 835
BpmI CTGGAG 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 935
BsaJI CCNNGG 1 cut(s) 55
BsaWI WCCGGW 3 cut(s) 881, 950, 1061
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 253, 467, 498, 1010
Bse118I RCCGGY 2 cut(s) 498, 881
Bse1I ACTGG 1 cut(s) 1001
Bse3DI GCAATG 1 cut(s) 849
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 5 cut(s) 38, 253, 467, 498, 1010
BseMI GCAATG 1 cut(s) 849
BseMII CTCAG 2 cut(s) 327, 474
BseNI ACTGG 1 cut(s) 1001
BseRI GAGGAG 2 cut(s) 934, 969
BseXI GCAGC 4 cut(s) 349, 598, 1081, 1142
BseYI CCCAGC 1 cut(s) 122
BsgI GTGCAG 1 cut(s) 1080
BshFI GGCC 3 cut(s) 101, 600, 980
BshNI GGYRCC 1 cut(s) 203
BshTI ACCGGT 1 cut(s) 881
BsiSI CCGG 6 cut(s) 499, 882, 914, 951, 1004, 1062
BslI CCNNNNNNNGG 5 cut(s) 38, 253, 467, 498, 1010
BsmAI GTCTC 2 cut(s) 251, 747
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 3 cut(s) 101, 600, 980
Bsp119I TTCGAA 1 cut(s) 935
Bsp143I GATC 5 cut(s) 3, 13, 85, 403, 631
BspACI CCGC 1 cut(s) 1100
BspANI GGCC 3 cut(s) 101, 600, 980
BspCNI CTCAG 2 cut(s) 326, 475
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 10, 205, 1002
BspMAI CTGCAG 1 cut(s) 1132
BspOI GCTAGC 1 cut(s) 800
BspPI GGATC 1 cut(s) 80
BspQI GCTCTTC 1 cut(s) 372
BspT104I TTCGAA 1 cut(s) 935
BspT107I GGYRCC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 849
BsrFI RCCGGY 2 cut(s) 498, 881
BsrI ACTGG 1 cut(s) 1001
BssAI RCCGGY 2 cut(s) 498, 881
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 5 cut(s) 3, 13, 85, 403, 631
BssNAI GTATAC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 55
Bst1107I GTATAC 1 cut(s) 117
Bst4CI ACNGT 3 cut(s) 26, 841, 926
Bst6I CTCTTC 3 cut(s) 372, 642, 955
BstBI TTCGAA 1 cut(s) 935
BstC8I GCNNGC 5 cut(s) 103, 202, 703, 798, 919
BstDEI CTNAG 2 cut(s) 313, 483
BstF5I GGATG 1 cut(s) 364
BstKTI GATC 5 cut(s) 6, 16, 88, 406, 634
BstMAI GTCTC 2 cut(s) 251, 747
BstMBI GATC 5 cut(s) 3, 13, 85, 403, 631
BstMWI GCNNNNNNNGC 2 cut(s) 977, 1046
BstNSI RCATGY 3 cut(s) 666, 705, 794
BstSFI CTRYAG 1 cut(s) 1128
BstV1I GCAGC 4 cut(s) 349, 598, 1081, 1142
BstV2I GAAGAC 1 cut(s) 835
BstXI CCANNNNNNTGG 2 cut(s) 501, 622
BstZ17I GTATAC 1 cut(s) 117
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 3 cut(s) 101, 600, 980
BtgZI GCGATG 1 cut(s) 1008
BtsCI GGATG 1 cut(s) 364
Cac8I GCNNGC 5 cut(s) 103, 202, 703, 798, 919
CciI TCATGA 1 cut(s) 163
Cfr10I RCCGGY 2 cut(s) 498, 881
Cfr13I GGNCC 2 cut(s) 599, 1001
Csp6I GTAC 1 cut(s) 722
CspAI ACCGGT 1 cut(s) 881
CviAII CATG 7 cut(s) 164, 575, 635, 644, 663, 702, 791
CviQI GTAC 1 cut(s) 722
DdeI CTNAG 2 cut(s) 313, 483
DpnI GATC 5 cut(s) 5, 15, 87, 405, 633
DpnII GATC 5 cut(s) 3, 13, 85, 403, 631
DriI GACNNNNNGTC 1 cut(s) 988
EaeI YGGCCR 1 cut(s) 978
Eam1104I CTCTTC 3 cut(s) 372, 642, 955
Eam1105I GACNNNNNGTC 1 cut(s) 988
EarI CTCTTC 3 cut(s) 372, 642, 955
Eco130I CCWWGG 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 1001
EcoT14I CCWWGG 1 cut(s) 55
EcoT22I ATGCAT 1 cut(s) 668
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 7 cut(s) 167, 578, 638, 647, 666, 705, 794
FatI CATG 7 cut(s) 163, 574, 634, 643, 662, 701, 790
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 4 cut(s) 363, 612, 1095, 1131
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 4 cut(s) 363, 612, 1095, 1131
FspBI CTAG 8 cut(s) 128, 273, 347, 569, 725, 797, 1050, 1056
GluI GCNGC 4 cut(s) 363, 612, 1095, 1131
GsaI CCCAGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 3 cut(s) 101, 600, 980
HapII CCGG 6 cut(s) 499, 882, 914, 951, 1004, 1062
Hin1II CATG 7 cut(s) 167, 578, 638, 647, 666, 705, 794
HindIII AAGCTT 1 cut(s) 969
HinfI GANTC 6 cut(s) 136, 278, 448, 554, 989, 1088
HpaII CCGG 6 cut(s) 499, 882, 914, 951, 1004, 1062
HphI GGTGA 5 cut(s) 327, 818, 838, 878, 921
Hpy166II GTNNAC 3 cut(s) 117, 756, 929
Hpy188I TCNGA 3 cut(s) 8, 316, 553
Hpy188III TCNNGA 6 cut(s) 164, 302, 461, 482, 558, 713
Hpy8I GTNNAC 3 cut(s) 117, 756, 929
Hpy99I CGWCG 2 cut(s) 986, 989
HpyAV CCTTC 2 cut(s) 942, 1134
HpyCH4III ACNGT 3 cut(s) 26, 841, 926
HpyCH4V TGCA 7 cut(s) 438, 517, 638, 666, 689, 1097, 1130
HpyF10VI GCNNNNNNNGC 2 cut(s) 977, 1046
HpyF3I CTNAG 2 cut(s) 313, 483
Hsp92II CATG 7 cut(s) 167, 578, 638, 647, 666, 705, 794
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 5 cut(s) 3, 13, 85, 403, 631
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 3 cut(s) 8, 541, 1019
Lsp1109I GCAGC 4 cut(s) 349, 598, 1081, 1142
LweI GCATC 3 cut(s) 349, 504, 1031
MaeI CTAG 8 cut(s) 128, 273, 347, 569, 725, 797, 1050, 1056
MaeIII GTNAC 3 cut(s) 26, 806, 835
MalI GATC 5 cut(s) 5, 15, 87, 405, 633
MboI GATC 5 cut(s) 3, 13, 85, 403, 631
MboII GAAGA 6 cut(s) 179, 359, 659, 728, 835, 972
MfeI CAATTG 2 cut(s) 606, 831
MluCI AATT 6 cut(s) 194, 226, 342, 606, 831, 937
MlyI GAGTC 1 cut(s) 998
MmeI TCCRAC 4 cut(s) 24, 866, 1017, 1128
Mph1103I ATGCAT 1 cut(s) 668
MseI TTAA 3 cut(s) 21, 669, 767
MslI CAYNNNNRTG 1 cut(s) 620
MspA1I CMGCKG 2 cut(s) 122, 1133
MspI CCGG 6 cut(s) 499, 882, 914, 951, 1004, 1062
MunI CAATTG 2 cut(s) 606, 831
Mva1269I GAATGC 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 977, 1046
NdeII GATC 5 cut(s) 3, 13, 85, 403, 631
NheI GCTAGC 1 cut(s) 796
NlaIII CATG 7 cut(s) 167, 578, 638, 647, 666, 705, 794
NlaIV GGNNCC 3 cut(s) 10, 205, 1002
NmuCI GTSAC 3 cut(s) 26, 806, 835
NsiI ATGCAT 1 cut(s) 668
NspI RCATGY 3 cut(s) 666, 705, 794
NspV TTCGAA 1 cut(s) 935
PaeI GCATGC 1 cut(s) 705
PagI TCATGA 1 cut(s) 163
PciI ACATGT 1 cut(s) 790
PciSI GCTCTTC 1 cut(s) 372
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 5 cut(s) 136, 278, 448, 554, 1088
PinAI ACCGGT 1 cut(s) 881
PkrI GCNGC 4 cut(s) 364, 613, 1096, 1132
PleI GAGTC 1 cut(s) 997
PpsI GAGTC 1 cut(s) 997
PscI ACATGT 1 cut(s) 790
PshBI ATTAAT 1 cut(s) 669
PspFI CCCAGC 1 cut(s) 122
PspN4I GGNNCC 3 cut(s) 10, 205, 1002
PspPI GGNCC 2 cut(s) 599, 1001
PstI CTGCAG 1 cut(s) 1132
PvuII CAGCTG 2 cut(s) 122, 1133
RsaI GTAC 1 cut(s) 723
RsaNI GTAC 1 cut(s) 722
RseI CAYNNNNRTG 1 cut(s) 620
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 3 cut(s) 21, 669, 767
SatI GCNGC 4 cut(s) 363, 612, 1095, 1131
Sau3AI GATC 5 cut(s) 3, 13, 85, 403, 631
Sau96I GGNCC 2 cut(s) 599, 1001
SchI GAGTC 1 cut(s) 998
SfaNI GCATC 3 cut(s) 349, 504, 1031
SfcI CTRYAG 1 cut(s) 1128
SfuI TTCGAA 1 cut(s) 935
SinI GGWCC 1 cut(s) 1001
SmiMI CAYNNNNRTG 1 cut(s) 620
SphI GCATGC 1 cut(s) 705
Sse9I AATT 6 cut(s) 194, 226, 342, 606, 831, 937
SsiI CCGC 1 cut(s) 1100
SspI AATATT 1 cut(s) 895
SspMI CTAG 8 cut(s) 128, 273, 347, 569, 725, 797, 1050, 1056
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 3 cut(s) 26, 841, 926
TaqI TCGA 2 cut(s) 935, 974
TasI AATT 6 cut(s) 194, 226, 342, 606, 831, 937
TatI WGTACW 1 cut(s) 721
TfiI GAWTC 5 cut(s) 136, 278, 448, 554, 1088
Tru1I TTAA 3 cut(s) 21, 669, 767
Tru9I TTAA 3 cut(s) 21, 669, 767
TseFI GTSAC 3 cut(s) 26, 806, 835
TseI GCWGC 4 cut(s) 362, 611, 1094, 1130
Tsp45I GTSAC 3 cut(s) 26, 806, 835
TspDTI ATGAA 3 cut(s) 239, 532, 660
VpaK11BI GGWCC 1 cut(s) 1001
VspI ATTAAT 1 cut(s) 669
XapI RAATTY 3 cut(s) 194, 226, 937
XceI RCATGY 3 cut(s) 666, 705, 794
XmiI GTMKAC 1 cut(s) 116
XspI CTAG 8 cut(s) 128, 273, 347, 569, 725, 797, 1050, 1056
Zsp2I ATGCAT 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.