Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003267.1

Orthogroup ID

OG0020447

Physical Location & Seq

Genomic Coordinates Reverse (-)

159548 .. 159808

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003267.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgttccggactctcgatttatatcgggccatatccgatttgtggccggaaatcgagttcatattctcgttcgaatcaacctcggcagtccgatctttgggcattaactctctcatcaaactcagcgaggccgtccggacgatgctcaaggatttcgaagacgccgttgccggaagcctacttcggctgctacgaagtcgacgagtcgccgatttcagtacggatcgcgtggctggttcttgtgctactctgcaaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000145 GO:0001505 GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005938 GO:0006810 GO:0006836 GO:0006887 GO:0006903 GO:0006904 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0008013 GO:0008150 GO:0008289 GO:0009987 GO:0016079 GO:0016080 GO:0016081 GO:0016192 GO:0017156 GO:0022406 GO:0023052 GO:0023061 GO:0032940 GO:0032991 GO:0035091 GO:0043167 GO:0043168 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0045055 GO:0046903 GO:0046907 GO:0048278 GO:0048489 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0065007 GO:0065008 GO:0071944 GO:0097479 GO:0097480 GO:0098916 GO:0099003 GO:0099023 GO:0099504 GO:0099536 GO:0099537 GO:0099568 GO:0099643 GO:0140029 GO:0140056 GO:1901981 GO:1902936

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Exo70

Protein Analysis

86

Amino Acids

9.68

Weight (kDa)

6.19

Isoelectric Point (pI)

50.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020447)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g01010
rosa_chinensis	RchiOBHm_Chr3g0463711 RchiOBHm_Chr7g0198381
rosa_multiflora	Rmu_sc0003267.1_g000034
rosa_samantha	Rh3DG129400 Rh7AG170900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	199
AccII	CGCG	1 cut(s)	228
AccIII	TCCGGA	2 cut(s)	6, 135
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	2 cut(s)	42, 97
AloI	GAACNNNNNNTCC	2 cut(s)	41, 73
AlwI	GGATC	1 cut(s)	231
Aor13HI	TCCGGA	2 cut(s)	6, 135
AoxI	GGCC	3 cut(s)	27, 44, 129
ApeKI	GCWGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	27
AsuII	TTCGAA	2 cut(s)	72, 156
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	174
BceAI	ACGGC	2 cut(s)	116, 149
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	27
BmsI	GCATC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	165
Bpu14I	TTCGAA	2 cut(s)	72, 156
BpuEI	CTTGAG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	2 cut(s)	6, 135
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 97
Bse8I	GATNNNNATC	1 cut(s)	21
BseAI	TCCGGA	2 cut(s)	6, 135
BseDI	CCNNGG	1 cut(s)	81
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	2 cut(s)	42, 97
BseMII	CTCAG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	3 cut(s)	29, 46, 131
BsiSI	CCGG	4 cut(s)	7, 47, 136, 171
BslI	CCNNNNNNNGG	2 cut(s)	42, 97
BsnI	GGCC	3 cut(s)	29, 46, 131
Bsp119I	TTCGAA	2 cut(s)	72, 156
Bsp13I	TCCGGA	2 cut(s)	6, 135
Bsp143I	GATC	2 cut(s)	92, 223
BspANI	GGCC	3 cut(s)	29, 46, 131
BspCNI	CTCAG	1 cut(s)	135
BspEI	TCCGGA	2 cut(s)	6, 135
BspFNI	CGCG	1 cut(s)	228
BspPI	GGATC	1 cut(s)	231
BspT104I	TTCGAA	2 cut(s)	72, 156
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	2 cut(s)	92, 223
BssNI	GRCGYC	1 cut(s)	162
BstACI	GRCGYC	1 cut(s)	162
BstBI	TTCGAA	2 cut(s)	72, 156
BstDEI	CTNAG	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	228
BstKTI	GATC	2 cut(s)	95, 226
BstMBI	GATC	2 cut(s)	92, 223
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	29, 46, 131
Cfr13I	GGNCC	1 cut(s)	27
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	219
CviJI	RGCY	6 cut(s)	29, 46, 131, 177, 187, 233
CviKI_1	RGCY	6 cut(s)	29, 46, 131, 177, 187, 233
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	2 cut(s)	94, 225
DpnII	GATC	2 cut(s)	92, 223
EaeI	YGGCCR	1 cut(s)	44
FaiI	YATR	3 cut(s)	22, 32, 62
FblI	GTMKAC	1 cut(s)	199
Fnu4HI	GCNGC	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	188
HaeIII	GGCC	3 cut(s)	29, 46, 131
HapII	CCGG	4 cut(s)	7, 47, 136, 171
HgaI	GACGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	200
HindII	GTYRAC	1 cut(s)	200
HinfI	GANTC	3 cut(s)	10, 74, 204
HpaII	CCGG	4 cut(s)	7, 47, 136, 171
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	37, 92
Hpy188III	TCNNGA	3 cut(s)	7, 14, 136
Hpy8I	GTNNAC	1 cut(s)	200
Hpy99I	CGWCG	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	253
HpyF3I	CTNAG	1 cut(s)	122
Hsp92I	GRCGYC	1 cut(s)	162
Kpn2I	TCCGGA	2 cut(s)	6, 135
Kzo9I	GATC	2 cut(s)	92, 223
LpnPI	CCDG	5 cut(s)	20, 60, 149, 184, 219
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	1 cut(s)	132
MalI	GATC	2 cut(s)	94, 225
MboI	GATC	2 cut(s)	92, 223
MboII	GAAGA	1 cut(s)	170
MlyI	GAGTC	2 cut(s)	4, 213
MnlI	CCTC	2 cut(s)	91, 121
MroI	TCCGGA	2 cut(s)	6, 135
MseI	TTAA	1 cut(s)	105
MspI	CCGG	4 cut(s)	7, 47, 136, 171
MvnI	CGCG	1 cut(s)	228
NdeII	GATC	2 cut(s)	92, 223
NmeAIII	GCCGAG	1 cut(s)	62
NspV	TTCGAA	2 cut(s)	72, 156
PcsI	WCGNNNNNNNCGW	3 cut(s)	162, 190, 199
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	2 cut(s)	4, 212
PpsI	GAGTC	2 cut(s)	4, 212
PspPI	GGNCC	1 cut(s)	27
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SalI	GTCGAC	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	2 cut(s)	92, 223
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	2 cut(s)	4, 213
SetI	ASST	1 cut(s)	83
SfaNI	GCATC	1 cut(s)	132
SfuI	TTCGAA	2 cut(s)	72, 156
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
TaqI	TCGA	5 cut(s)	15, 54, 72, 156, 199
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseI	GCWGC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	49
TspGWI	ACGGA	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.