Rh3DG129400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0020447
Physical Location & Seq
Reverse (-)
11052866 .. 11053937
1072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG129400.1

Sequence Viewer

Length: 414 bp
ATGCTTATACATCATTACTTGTCTTTGCTTTCATTCCAATTCCAAACCAAACACAGATTTACCATTTTTGGCCGTGAAAGTCGCCATGAAAACTCTCTTTTGGCCGTAATGCTTCCCAGAATTGGTGGCGAAATGCAAGAAATCTCCTTAGAAGATGTTCCGGACTCTCGATTTATATCGGGCCATATCCGATTTGTGGCCGGAAATCGAGTTCATATTCTCGTTCGAATCAACCTCGGCAGTCTGATCTTTGGCATTAACTCTCTCATCAAACTCAGCGAGGCCGTCCGGACGATGCTCAAGGATTTCGAAGGCGCCGTTGCCGGAAGCCTACTTCGGCTGCTACGAAGTCGACGAGTCGCCGATTTCAGTACGGATCGCGTGGCTGGTTCTTGTGCTTCTCTGCAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.41

Weight (kDa)

10.34

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020447)

Species Orthologous Gene IDs
pyrus_communis pycom13g01010
rosa_chinensis RchiOBHm_Chr3g0463711 RchiOBHm_Chr7g0198381
rosa_multiflora Rmu_sc0003267.1_g000034
rosa_samantha Rh3DG129400 Rh7AG170900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 352
AccII CGCG 1 cut(s) 381
AccIII TCCGGA 2 cut(s) 160, 288
AclWI GGATC 1 cut(s) 384
AcoI YGGCCR 3 cut(s) 70, 102, 198
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 1 cut(s) 373
AfiI CCNNNNNNNGG 2 cut(s) 122, 196
AloI GAACNNNNNNTCC 2 cut(s) 195, 227
AlwI GGATC 1 cut(s) 384
Aor13HI TCCGGA 2 cut(s) 160, 288
AoxI GGCC 5 cut(s) 70, 102, 181, 198, 282
ApeKI GCWGC 1 cut(s) 340
Asp700I GAANNNNTTC 1 cut(s) 156
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 181
AsuII TTCGAA 2 cut(s) 226, 309
BanI GGYRCC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 327
BceAI ACGGC 4 cut(s) 57, 89, 269, 302
BfoI RGCGCY 1 cut(s) 318
BisI GCNGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 342
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 316
BmsI GCATC 1 cut(s) 285
Bpu14I TTCGAA 2 cut(s) 226, 309
BpuEI CTTGAG 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 175
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 2 cut(s) 160, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 196
Bse8I GATNNNNATC 1 cut(s) 175
BseAI TCCGGA 2 cut(s) 160, 288
BseDI CCNNGG 1 cut(s) 235
BseJI GATNNNNATC 1 cut(s) 175
BseLI CCNNNNNNNGG 2 cut(s) 122, 196
BseMII CTCAG 1 cut(s) 289
BseXI GCAGC 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 381
BshFI GGCC 5 cut(s) 72, 104, 183, 200, 284
BshNI GGYRCC 1 cut(s) 314
BsiSI CCGG 4 cut(s) 161, 201, 289, 324
BslI CCNNNNNNNGG 2 cut(s) 122, 196
BsnI GGCC 5 cut(s) 72, 104, 183, 200, 284
Bsp119I TTCGAA 2 cut(s) 226, 309
Bsp13I TCCGGA 2 cut(s) 160, 288
Bsp143I GATC 2 cut(s) 246, 376
BspANI GGCC 5 cut(s) 72, 104, 183, 200, 284
BspCNI CTCAG 1 cut(s) 288
BspEI TCCGGA 2 cut(s) 160, 288
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 316
BspPI GGATC 1 cut(s) 384
BspT104I TTCGAA 2 cut(s) 226, 309
BspT107I GGYRCC 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 2 cut(s) 246, 376
BssNI GRCGYC 1 cut(s) 315
BstACI GRCGYC 1 cut(s) 315
BstBI TTCGAA 2 cut(s) 226, 309
BstDEI CTNAG 2 cut(s) 148, 275
BstFNI CGCG 1 cut(s) 381
BstH2I RGCGCY 1 cut(s) 318
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 2 cut(s) 249, 379
BstMBI GATC 2 cut(s) 246, 376
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 327
BsuRI GGCC 5 cut(s) 72, 104, 183, 200, 284
CfoI GCGC 1 cut(s) 317
Cfr13I GGNCC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 372
CviAII CATG 1 cut(s) 86
CviJI RGCY 8 cut(s) 72, 104, 183, 200, 284, 330, 340, 386
CviKI_1 RGCY 8 cut(s) 72, 104, 183, 200, 284, 330, 340, 386
CviQI GTAC 1 cut(s) 372
DdeI CTNAG 2 cut(s) 148, 275
DinI GGCGCC 1 cut(s) 316
DpnI GATC 2 cut(s) 248, 378
DpnII GATC 2 cut(s) 246, 376
EaeI YGGCCR 3 cut(s) 70, 102, 198
EgeI GGCGCC 1 cut(s) 316
EheI GGCGCC 1 cut(s) 316
FaeI CATG 1 cut(s) 89
FaiI YATR 5 cut(s) 8, 87, 176, 186, 216
FatI CATG 1 cut(s) 85
FblI GTMKAC 1 cut(s) 352
Fnu4HI GCNGC 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 341
GlaI GCGC 1 cut(s) 316
GluI GCNGC 1 cut(s) 341
HaeII RGCGCY 1 cut(s) 318
HaeIII GGCC 5 cut(s) 72, 104, 183, 200, 284
HapII CCGG 4 cut(s) 161, 201, 289, 324
HhaI GCGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HincII GTYRAC 1 cut(s) 353
HindII GTYRAC 1 cut(s) 353
HinfI GANTC 3 cut(s) 164, 228, 357
HpaII CCGG 4 cut(s) 161, 201, 289, 324
Hpy166II GTNNAC 1 cut(s) 353
Hpy188I TCNGA 2 cut(s) 191, 246
Hpy188III TCNNGA 3 cut(s) 161, 168, 289
Hpy8I GTNNAC 1 cut(s) 353
Hpy99I CGWCG 1 cut(s) 357
HpyAV CCTTC 1 cut(s) 305
HpyCH4V TGCA 2 cut(s) 136, 406
HpyF3I CTNAG 2 cut(s) 148, 275
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 1 cut(s) 315
KasI GGCGCC 1 cut(s) 314
Kpn2I TCCGGA 2 cut(s) 160, 288
Kzo9I GATC 2 cut(s) 246, 376
LpnPI CCDG 6 cut(s) 130, 174, 214, 302, 337, 372
Lsp1109I GCAGC 1 cut(s) 327
LweI GCATC 1 cut(s) 285
MalI GATC 2 cut(s) 248, 378
MboI GATC 2 cut(s) 246, 376
MboII GAAGA 1 cut(s) 164
MluCI AATT 2 cut(s) 38, 120
Mly113I GGCGCC 1 cut(s) 315
MlyI GAGTC 2 cut(s) 158, 366
MnlI CCTC 2 cut(s) 245, 274
MroI TCCGGA 2 cut(s) 160, 288
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 1 cut(s) 258
MspI CCGG 4 cut(s) 161, 201, 289, 324
MvnI CGCG 1 cut(s) 381
NarI GGCGCC 1 cut(s) 315
NdeII GATC 2 cut(s) 246, 376
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 1 cut(s) 316
NmeAIII GCCGAG 1 cut(s) 216
NspV TTCGAA 2 cut(s) 226, 309
PcsI WCGNNNNNNNCGW 3 cut(s) 315, 343, 352
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 228
PkrI GCNGC 1 cut(s) 342
PleI GAGTC 2 cut(s) 158, 365
PluTI GGCGCC 1 cut(s) 318
PpsI GAGTC 2 cut(s) 158, 365
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 1 cut(s) 181
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
SalI GTCGAC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 1 cut(s) 341
Sau3AI GATC 2 cut(s) 246, 376
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 2 cut(s) 158, 366
SetI ASST 1 cut(s) 237
SfaNI GCATC 1 cut(s) 285
SfoI GGCGCC 1 cut(s) 316
SfuI TTCGAA 2 cut(s) 226, 309
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 2 cut(s) 38, 120
SspDI GGCGCC 1 cut(s) 314
TaqI TCGA 5 cut(s) 169, 208, 226, 309, 352
TasI AATT 2 cut(s) 38, 120
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TseI GCWGC 1 cut(s) 340
TspDTI ATGAA 3 cut(s) 21, 102, 203
TspGWI ACGGA 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 352
XmnI GAANNNNTTC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.