Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003458.1

Orthogroup ID

OG0018393

Physical Location & Seq

Genomic Coordinates Forward (+)

106151 .. 108819

Gene Structure 2669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003458.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgctggtggcattcgcggtgattacctttgatcgtcgagggcggattgaggatgacgtcatccaactccacgatcccaacccctctgggcttcgccggttttgttcgtcagatgtccgggaaactctccacgtaggaatcgggtctgggcttcgccagttttatttgtcagatgttcgggaagctccgaagctccacgccggaatcgagtctgggcttcgcttgcaggtctcagacaacgtcaaaactgtggtctattgggggccaatttggtgcctaaaattggggttaaactctcagattctaaagatgaaggacacaaagacgacaagagtggccgaactccgacagcaactcaaggaggtcgaaagacgagtgcggcaggaggaggaaagaagcaaggagcttcaaaagcgggaagaggcgcggagagaccagccgaaaggctggtgggaggccaacgtccaagagctcgatgagaaagagcttaatgaactacatgccaagtttgcggagctgcacacatctctcctaaacaatctaaaggagagaaactcatctggtgaggcagggagtagtacttctgctgaacaattaatccaatccttctccccaaaaaccaatgtaaaggggtttctagagagggtgaaggcttgtaattattgttgttttttctacgtaaaagttaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

230

Amino Acids

26.51

Weight (kDa)

8.77

Isoelectric Point (pI)

55.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018393)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05941
rosa_chinensis	RchiOBHm_Chr5g0013521
rosa_laevigata	RLG00000032022
rosa_multiflora	Rmu_sc0003458.1_g000022
rosa_roxburghii	Rroxscaffold_1G00063050 Rroxscaffold_3G00230040
rosa_rugosa	Rorug05G0010200
rosa_samantha	Rh5AG105200 Rh5CG113300 Rh5DG100000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
Acc36I	ACCTGC	1 cut(s)	217
AccB1I	GGYRCC	1 cut(s)	273
AccII	CGCG	2 cut(s)	17, 427
AciI	CCGC	6 cut(s)	17, 43, 379, 415, 427, 512
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	410
AloI	GAACNNNNNNTCC	2 cut(s)	582, 614
AluBI	AGCT	6 cut(s)	185, 193, 406, 472, 487, 517
AluI	AGCT	6 cut(s)	185, 193, 406, 472, 487, 517
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	2 cut(s)	235, 426
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	3 cut(s)	263, 336, 456
ApeKI	GCWGC	1 cut(s)	517
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AseI	ATTAAT	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	3 cut(s)	31, 575, 658
BanI	GGYRCC	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	1 cut(s)	504
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	2 cut(s)	235, 426
BfaI	CTAG	1 cut(s)	638
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	2 cut(s)	380, 518
BlsI	GCNGC	2 cut(s)	381, 519
BmcAI	AGTACT	1 cut(s)	580
Bme1390I	CCNGG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	2 cut(s)	264, 275
BmrFI	CCNGG	1 cut(s)	119
BplI	GAGNNNNNCTC	2 cut(s)	539, 571
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	119
BsaAI	YACGTR	2 cut(s)	133, 679
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	2 cut(s)	235, 426
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	157
BseGI	GGATG	2 cut(s)	58, 60
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMII	CTCAG	2 cut(s)	246, 311
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	504
BsgI	GTGCAG	1 cut(s)	503
Bsh1236I	CGCG	2 cut(s)	17, 427
BshFI	GGCC	3 cut(s)	265, 338, 458
BshNI	GGYRCC	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	3 cut(s)	97, 118, 201
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	2 cut(s)	235, 426
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	3 cut(s)	265, 338, 458
Bso31I	GGTCTC	2 cut(s)	235, 426
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	31, 73
BspACI	CCGC	6 cut(s)	17, 43, 379, 415, 427, 512
BspANI	GGCC	3 cut(s)	265, 338, 458
BspCNI	CTCAG	2 cut(s)	245, 310
BspFNI	CGCG	2 cut(s)	17, 427
BspLI	GGNNCC	2 cut(s)	264, 275
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	273
BspTNI	GGTCTC	2 cut(s)	235, 426
BsrFI	RCCGGY	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	96
BssMI	GATC	2 cut(s)	31, 73
BssNI	GRCGYC	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	414
BstACI	GRCGYC	1 cut(s)	57
BstBAI	YACGTR	2 cut(s)	133, 679
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	2 cut(s)	232, 297
BstF5I	GGATG	2 cut(s)	58, 60
BstFNI	CGCG	2 cut(s)	17, 427
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	2 cut(s)	34, 76
BstMAI	GTCTC	2 cut(s)	235, 426
BstMBI	GATC	2 cut(s)	31, 73
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 412, 509
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	117
BstSNI	TACGTA	1 cut(s)	679
BstUI	CGCG	2 cut(s)	17, 427
BstV1I	GCAGC	1 cut(s)	504
BsuRI	GGCC	3 cut(s)	265, 338, 458
BtsCI	GGATG	2 cut(s)	58, 60
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	224
CfoI	GCGC	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	579
CviAII	CATG	1 cut(s)	500
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	2 cut(s)	232, 297
DpnI	GATC	2 cut(s)	33, 75
DpnII	GATC	2 cut(s)	31, 73
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
EciI	GGCGGA	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	472
Eco105I	TACGTA	1 cut(s)	679
Eco24I	GRGCYC	1 cut(s)	474
Eco31I	GGTCTC	2 cut(s)	235, 426
Eco53kI	GAGCTC	1 cut(s)	472
EcoICRI	GAGCTC	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	474
FaeI	CATG	1 cut(s)	503
FaiI	YATR	1 cut(s)	501
FatI	CATG	1 cut(s)	499
FauI	CCCGC	1 cut(s)	408
Fnu4HI	GCNGC	2 cut(s)	380, 518
FokI	GGATG	2 cut(s)	47, 65
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	2 cut(s)	380, 518
FspBI	CTAG	1 cut(s)	638
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	2 cut(s)	380, 518
HaeIII	GGCC	3 cut(s)	265, 338, 458
HapII	CCGG	3 cut(s)	97, 118, 201
HhaI	GCGC	1 cut(s)	427
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	503
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HinfI	GANTC	4 cut(s)	138, 204, 209, 301
HpaII	CCGG	3 cut(s)	97, 118, 201
HphI	GGTGA	3 cut(s)	31, 575, 658
Hpy188I	TCNGA	6 cut(s)	112, 172, 189, 235, 300, 347
Hpy188III	TCNNGA	2 cut(s)	179, 638
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	3 cut(s)	307, 616, 643
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	5 cut(s)	57, 132, 240, 462, 678
HpyCH4V	TGCA	2 cut(s)	226, 520
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 412, 509
HpyF3I	CTNAG	2 cut(s)	232, 297
HpySE526I	ACGT	5 cut(s)	57, 132, 240, 462, 678
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	503
HspAI	GCGC	1 cut(s)	425
Kzo9I	GATC	2 cut(s)	31, 73
LmnI	GCTCC	4 cut(s)	190, 198, 403, 514
Lsp1109I	GCAGC	1 cut(s)	504
MaeI	CTAG	1 cut(s)	638
MaeII	ACGT	5 cut(s)	57, 132, 240, 462, 678
MalI	GATC	2 cut(s)	33, 75
MboI	GATC	2 cut(s)	31, 73
MboII	GAAGA	1 cut(s)	431
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	5 cut(s)	267, 281, 593, 658, 688
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	2 cut(s)	88, 370
MseI	TTAA	5 cut(s)	290, 489, 596, 687, 691
MspI	CCGG	3 cut(s)	97, 118, 201
MspR9I	CCNGG	1 cut(s)	119
Mva1269I	GAATGC	1 cut(s)	11
MvnI	CGCG	2 cut(s)	17, 427
MwoI	GCNNNNNNNGC	3 cut(s)	223, 412, 509
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	2 cut(s)	31, 73
NlaIII	CATG	1 cut(s)	503
NlaIV	GGNNCC	2 cut(s)	264, 275
NspI	RCATGY	1 cut(s)	503
PacI	TTAATTAA	1 cut(s)	691
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	3 cut(s)	138, 204, 301
PflFI	GACNNNGTC	1 cut(s)	239
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	381, 519
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
Ppu21I	YACGTR	2 cut(s)	133, 679
PshBI	ATTAAT	1 cut(s)	596
Psp124BI	GAGCTC	1 cut(s)	474
PspN4I	GGNNCC	2 cut(s)	264, 275
PspPI	GGNCC	1 cut(s)	263
PsyI	GACNNNGTC	1 cut(s)	239
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
SacI	GAGCTC	1 cut(s)	474
SaqAI	TTAA	5 cut(s)	290, 489, 596, 687, 691
SatI	GCNGC	2 cut(s)	380, 518
Sau3AI	GATC	2 cut(s)	31, 73
Sau96I	GGNCC	1 cut(s)	263
ScaI	AGTACT	1 cut(s)	580
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SnaBI	TACGTA	1 cut(s)	679
Sse9I	AATT	5 cut(s)	267, 281, 593, 658, 688
SsiI	CCGC	6 cut(s)	17, 43, 379, 415, 427, 512
SspMI	CTAG	1 cut(s)	638
SstI	GAGCTC	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	5 cut(s)	60, 135, 243, 465, 681
TaqI	TCGA	4 cut(s)	37, 207, 366, 474
TasI	AATT	5 cut(s)	267, 281, 593, 658, 688
TatI	WGTACW	1 cut(s)	578
TauI	GCSGC	1 cut(s)	382
TfiI	GAWTC	3 cut(s)	138, 204, 301
Tru1I	TTAA	5 cut(s)	290, 489, 596, 687, 691
Tru9I	TTAA	5 cut(s)	290, 489, 596, 687, 691
TseI	GCWGC	1 cut(s)	517
TspDTI	ATGAA	2 cut(s)	326, 507
Tth111I	GACNNNGTC	1 cut(s)	239
VspI	ATTAAT	1 cut(s)	596
XbaI	TCTAGA	1 cut(s)	637
XceI	RCATGY	1 cut(s)	503
XspI	CTAG	1 cut(s)	638
ZraI	GACGTC	1 cut(s)	58
ZrmI	AGTACT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.