Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0018393

Physical Location & Seq

Genomic Coordinates Forward (+)

631095 .. 633912

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0010200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAAAATTGGGTCTCTTTTCTCGATCACAATGACATCTGTAATTCAAACTGGGAACTGCATCCTTATACTTCTTTGGTGGTTTGCATTAGTAGTGCTTCCTCTTATCACCTCTTTGCATCTGCACTACTGTCTACATCGTGCAACCGTGCCCAGAATAGCCCAATTGAAATCGGAGAAGCTCATCGAGGAATTGCATTTGCCTAATCTAATAGTTGCTGCCAAAGAGGAGGAAGGAGGATATCATTTGATCAAGGGAATCCTGACTCTGGAACATGCAAAGCTCAAAGTTAGGGTGGAGCTTTTACAGAGAAATCAATGTCATTTTATGGGGAAAGACCTCCAATCCTTAAGTATGAAAGATCTTCAGAATTTGGAGCAGCAACTTGATTCTGCTCTGAAGCACATGAGGTCTAGAAAGAATCAACTTATGTACGAATCCATTCAGTGCTTCAGAAGAAGGTGGAAGCTGTTGTTTTTGCCAATTCTTTTGTTAGTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

167

Amino Acids

19.46

Weight (kDa)

9.54

Isoelectric Point (pI)

54.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	89 - 156	1.3e-20	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018393)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05941
rosa_chinensis	RchiOBHm_Chr5g0013521
rosa_laevigata	RLG00000032022
rosa_multiflora	Rmu_sc0003458.1_g000022
rosa_roxburghii	Rroxscaffold_1G00063050 Rroxscaffold_3G00230040
rosa_rugosa	Rorug05G0010200
rosa_samantha	Rh5AG105200 Rh5CG113300 Rh5DG100000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	370
AcuI	CTGAAG	3 cut(s)	350, 419, 436
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	1 cut(s)	268
AflII	CTTAAG	1 cut(s)	349
AgsI	TTSAA	2 cut(s)	47, 169
AluBI	AGCT	4 cut(s)	181, 283, 301, 469
AluI	AGCT	4 cut(s)	181, 283, 301, 469
Alw26I	GTCTC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	218, 379
ApoI	RAATTY	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	441
AsuHPI	GGTGA	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	205, 391
BclI	TGATCA	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	1 cut(s)	414
BfrI	CTTAAG	1 cut(s)	349
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	2 cut(s)	219, 380
BlsI	GCNGC	2 cut(s)	220, 381
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	2 cut(s)	69, 127
BmuI	ACTGGG	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	205, 391
BsgI	GTGCAG	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	18
Bso31I	GGTCTC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	3 cut(s)	24, 249, 361
BspTI	CTTAAG	1 cut(s)	349
BspTNI	GGTCTC	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	55
BssMI	GATC	3 cut(s)	24, 249, 361
Bst4CI	ACNGT	2 cut(s)	131, 148
BstAFI	CTTAAG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	60
BstKTI	GATC	3 cut(s)	27, 252, 364
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	3 cut(s)	24, 249, 361
BstNSI	RCATGY	1 cut(s)	278
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	205, 391
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	2 cut(s)	275, 406
CviJI	RGCY	5 cut(s)	161, 181, 283, 301, 469
CviKI_1	RGCY	5 cut(s)	161, 181, 283, 301, 469
CviQI	GTAC	1 cut(s)	433
DpnI	GATC	3 cut(s)	26, 251, 363
DpnII	GATC	3 cut(s)	24, 249, 361
Eco31I	GGTCTC	1 cut(s)	18
Eco32I	GATATC	1 cut(s)	242
Eco57I	CTGAAG	3 cut(s)	350, 419, 436
EcoRV	GATATC	1 cut(s)	242
FaeI	CATG	2 cut(s)	278, 409
FaiI	YATR	6 cut(s)	68, 276, 329, 356, 407, 431
FatI	CATG	2 cut(s)	274, 405
FbaI	TGATCA	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	219, 380
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	2 cut(s)	219, 380
FspBI	CTAG	1 cut(s)	414
GluI	GCNGC	2 cut(s)	219, 380
Hin1II	CATG	2 cut(s)	278, 409
HinfI	GANTC	5 cut(s)	258, 265, 389, 421, 437
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	4 cut(s)	175, 369, 399, 455
Hpy188III	TCNNGA	4 cut(s)	22, 262, 269, 414
Hpy8I	GTNNAC	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	227, 453
HpyCH4III	ACNGT	2 cut(s)	131, 148
HpyCH4V	TGCA	7 cut(s)	60, 86, 118, 124, 143, 196, 278
Hsp92II	CATG	2 cut(s)	278, 409
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	24, 249, 361
LmnI	GCTCC	2 cut(s)	298, 376
LpnPI	CCDG	4 cut(s)	36, 166, 254, 275
Lsp1109I	GCAGC	2 cut(s)	205, 391
LweI	GCATC	2 cut(s)	69, 127
MaeI	CTAG	1 cut(s)	414
MalI	GATC	3 cut(s)	26, 251, 363
MboI	GATC	3 cut(s)	24, 249, 361
MboII	GAAGA	2 cut(s)	356, 468
MfeI	CAATTG	1 cut(s)	164
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	6 cut(s)	6, 42, 164, 191, 370, 483
MlyI	GAGTC	1 cut(s)	259
MnlI	CCTC	8 cut(s)	111, 121, 181, 220, 223, 230, 350, 402
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	1 cut(s)	350
MspCI	CTTAAG	1 cut(s)	349
MunI	CAATTG	1 cut(s)	164
NdeII	GATC	3 cut(s)	24, 249, 361
NlaIII	CATG	2 cut(s)	278, 409
NspI	RCATGY	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	4 cut(s)	258, 389, 421, 437
PkrI	GCNGC	2 cut(s)	220, 381
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	2 cut(s)	219, 380
Sau3AI	GATC	3 cut(s)	24, 249, 361
SchI	GAGTC	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	8 cut(s)	113, 183, 285, 303, 342, 413, 464, 471
SfaNI	GCATC	2 cut(s)	69, 127
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	6 cut(s)	6, 42, 164, 191, 370, 483
SspMI	CTAG	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	131, 148
TaqI	TCGA	2 cut(s)	23, 186
TasI	AATT	6 cut(s)	6, 42, 164, 191, 370, 483
TfiI	GAWTC	4 cut(s)	258, 389, 421, 437
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	1 cut(s)	452
TseI	GCWGC	2 cut(s)	218, 379
TspDTI	ATGAA	2 cut(s)	17, 371
TspRI	CASTG	1 cut(s)	452
Vha464I	CTTAAG	1 cut(s)	349
XapI	RAATTY	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	413
XceI	RCATGY	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	133
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.