Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0018393

Physical Location & Seq

Genomic Coordinates Reverse (-)

14571474 .. 14571758

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTCGGCCTCCACCGCCGCCGCTCGTCCCACCGTCGGACCACCAAAGGATGACGCCATCCAACTCCACGATCCCAACCCTCCGGGCTTCGCCGGTTTTGTTCGTCGGATGTCCGGAAGCTCCAAAAGCTCCACGCCCGAATCGGTCCGGGCCGGGCTTCACCGGTTTTGTTTGTCGATGTCCGGAAGCTCCGAAGCTCCACGCCGGAATCGGGTCCGGGCTCCGAAGCTCATCTCCTTGCAGGTCTCGGACGACATCAAAACTGTGGTCTATTGGGGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.08

Weight (kDa)

10.48

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018393)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05941
rosa_chinensis	RchiOBHm_Chr5g0013521
rosa_laevigata	RLG00000032022
rosa_multiflora	Rmu_sc0003458.1_g000022
rosa_roxburghii	Rroxscaffold_1G00063050 Rroxscaffold_3G00230040
rosa_rugosa	Rorug05G0010200
rosa_samantha	Rh5AG105200 Rh5CG113300 Rh5DG100000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	232
AccBSI	CCGCTC	1 cut(s)	23
AccIII	TCCGGA	2 cut(s)	113, 182
AciI	CCGC	3 cut(s)	15, 18, 21
AclWI	GGATC	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	35, 211
AgeI	ACCGGT	1 cut(s)	162
AluBI	AGCT	5 cut(s)	120, 129, 189, 197, 229
AluI	AGCT	5 cut(s)	120, 129, 189, 197, 229
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	65
Aor13HI	TCCGGA	2 cut(s)	113, 182
AoxI	GGCC	2 cut(s)	6, 150
ArsI	GACNNNNNNTTYG	2 cut(s)	252, 284
AsiGI	ACCGGT	1 cut(s)	162
AspS9I	GGNCC	4 cut(s)	38, 145, 150, 214
AsuC2I	CCSGG	4 cut(s)	84, 149, 154, 218
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	3 cut(s)	38, 145, 214
BanII	GRGCYC	1 cut(s)	223
BccI	CCATC	1 cut(s)	65
BcnI	CCSGG	4 cut(s)	84, 149, 154, 218
BcoDI	GTCTC	1 cut(s)	250
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	2 cut(s)	18, 21
BlsI	GCNGC	2 cut(s)	19, 22
Bme1390I	CCNGG	4 cut(s)	84, 149, 154, 218
Bme18I	GGWCC	3 cut(s)	38, 145, 214
BmgT120I	GGNCC	4 cut(s)	38, 145, 150, 214
BmiI	GGNNCC	2 cut(s)	215, 222
BmrFI	CCNGG	4 cut(s)	84, 149, 154, 218
BpuMI	CCSGG	4 cut(s)	84, 149, 154, 218
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	250
BsaWI	WCCGGW	3 cut(s)	113, 162, 182
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 211
Bse118I	RCCGGY	2 cut(s)	92, 162
BseAI	TCCGGA	2 cut(s)	113, 182
BseGI	GGATG	3 cut(s)	55, 57, 114
BseLI	CCNNNNNNNGG	2 cut(s)	35, 211
BshFI	GGCC	2 cut(s)	8, 152
BshTI	ACCGGT	1 cut(s)	162
BsiSI	CCGG	9 cut(s)	83, 93, 114, 148, 153, 163, 183, 205, 217
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	35, 211
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	8, 152
Bso31I	GGTCTC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp13I	TCCGGA	2 cut(s)	113, 182
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	3 cut(s)	15, 18, 21
BspANI	GGCC	2 cut(s)	8, 152
BspEI	TCCGGA	2 cut(s)	113, 182
BspLI	GGNNCC	2 cut(s)	215, 222
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	250
BsrBI	CCGCTC	1 cut(s)	23
BsrFI	RCCGGY	2 cut(s)	92, 162
BssAI	RCCGGY	2 cut(s)	92, 162
BssMI	GATC	1 cut(s)	70
BssNI	GRCGYC	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	34, 265
BstACI	GRCGYC	1 cut(s)	54
BstF5I	GGATG	3 cut(s)	55, 57, 114
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 126
BstSCI	CCNGG	4 cut(s)	82, 147, 152, 216
BsuRI	GGCC	2 cut(s)	8, 152
BtsCI	GGATG	3 cut(s)	55, 57, 114
BveI	ACCTGC	1 cut(s)	232
Cfr10I	RCCGGY	2 cut(s)	92, 162
Cfr13I	GGNCC	4 cut(s)	38, 145, 150, 214
CpoI	CGGWCCG	1 cut(s)	145
CseI	GACGC	1 cut(s)	62
CspAI	ACCGGT	1 cut(s)	162
CspI	CGGWCCG	1 cut(s)	145
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	250
Eco47I	GGWCC	3 cut(s)	38, 145, 214
EcoT38I	GRGCYC	1 cut(s)	223
FaqI	GGGAC	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	18, 21
FokI	GGATG	3 cut(s)	44, 62, 121
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	2 cut(s)	18, 21
GluI	GCNGC	2 cut(s)	18, 21
HaeIII	GGCC	2 cut(s)	8, 152
HapII	CCGG	9 cut(s)	83, 93, 114, 148, 153, 163, 183, 205, 217
HgaI	GACGC	1 cut(s)	62
Hin1I	GRCGYC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	140, 208
HpaII	CCGG	9 cut(s)	83, 93, 114, 148, 153, 163, 183, 205, 217
HphI	GGTGA	1 cut(s)	152
Hpy188I	TCNGA	5 cut(s)	38, 108, 193, 225, 250
Hpy188III	TCNNGA	2 cut(s)	114, 183
Hpy99I	CGWCG	2 cut(s)	38, 108
HpyCH4III	ACNGT	2 cut(s)	34, 265
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 126
Hsp92I	GRCGYC	1 cut(s)	54
Kpn2I	TCCGGA	2 cut(s)	113, 182
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	5 cut(s)	125, 134, 194, 202, 226
MalI	GATC	1 cut(s)	72
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	223
MmeI	TCCRAC	3 cut(s)	16, 85, 86
MnlI	CCTC	2 cut(s)	19, 90
MroI	TCCGGA	2 cut(s)	113, 182
MspI	CCGG	9 cut(s)	83, 93, 114, 148, 153, 163, 183, 205, 217
MspR9I	CCNGG	4 cut(s)	84, 149, 154, 218
MwoI	GCNNNNNNNGC	2 cut(s)	14, 126
NciI	CCSGG	4 cut(s)	84, 149, 154, 218
NdeII	GATC	1 cut(s)	70
NlaIV	GGNNCC	2 cut(s)	215, 222
PfeI	GAWTC	2 cut(s)	140, 208
PinAI	ACCGGT	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	19, 22
PspN4I	GGNNCC	2 cut(s)	215, 222
PspPI	GGNCC	4 cut(s)	38, 145, 150, 214
Rsr2I	CGGWCCG	1 cut(s)	145
RsrII	CGGWCCG	1 cut(s)	145
SatI	GCNGC	2 cut(s)	18, 21
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	4 cut(s)	38, 145, 150, 214
ScrFI	CCNGG	4 cut(s)	84, 149, 154, 218
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	6 cut(s)	122, 131, 191, 199, 231, 246
SinI	GGWCC	3 cut(s)	38, 145, 214
SsiI	CCGC	3 cut(s)	15, 18, 21
StyD4I	CCNGG	4 cut(s)	82, 147, 152, 216
TaaI	ACNGT	2 cut(s)	34, 265
TaqI	TCGA	1 cut(s)	176
TaqII	GACCGA	1 cut(s)	133
TauI	GCSGC	2 cut(s)	20, 23
TfiI	GAWTC	2 cut(s)	140, 208
VpaK11BI	GGWCC	3 cut(s)	38, 145, 214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.