No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g05941 |
| rosa_chinensis | RchiOBHm_Chr5g0013521 |
| rosa_laevigata | RLG00000032022 |
| rosa_multiflora | Rmu_sc0003458.1_g000022 |
| rosa_roxburghii | Rroxscaffold_1G00063050 Rroxscaffold_3G00230040 |
| rosa_rugosa | Rorug05G0010200 |
| rosa_samantha | Rh5AG105200 Rh5CG113300 Rh5DG100000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 108, 118 |
| AciI | CCGC | 3 cut(s) | 70, 118, 203 |
| AcoI | YGGCCR | 1 cut(s) | 27 |
| AfaI | GTAC | 1 cut(s) | 280 |
| AgsI | TTSAA | 1 cut(s) | 101 |
| AluBI | AGCT | 4 cut(s) | 97, 163, 178, 217 |
| AluI | AGCT | 4 cut(s) | 97, 163, 178, 217 |
| Alw21I | GWGCWC | 1 cut(s) | 165 |
| Alw26I | GTCTC | 1 cut(s) | 117 |
| AoxI | GGCC | 2 cut(s) | 27, 147 |
| ApeKI | GCWGC | 2 cut(s) | 208, 217 |
| AseI | ATTAAT | 1 cut(s) | 296 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 256 |
| AspLEI | GCGC | 2 cut(s) | 108, 118 |
| AsuHPI | GGTGA | 1 cut(s) | 275 |
| BanII | GRGCYC | 1 cut(s) | 165 |
| Bbv12I | GWGCWC | 1 cut(s) | 165 |
| BbvI | GCAGC | 2 cut(s) | 204, 220 |
| BcoDI | GTCTC | 1 cut(s) | 117 |
| BisI | GCNGC | 3 cut(s) | 71, 209, 218 |
| BlsI | GCNGC | 3 cut(s) | 72, 210, 219 |
| BmcAI | AGTACT | 1 cut(s) | 280 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 239, 271 |
| BpuEI | CTTGAG | 1 cut(s) | 32 |
| BsaI | GGTCTC | 1 cut(s) | 117 |
| BseRI | GAGGAG | 1 cut(s) | 92 |
| BseXI | GCAGC | 2 cut(s) | 204, 220 |
| BsgI | GTGCAG | 1 cut(s) | 203 |
| Bsh1236I | CGCG | 2 cut(s) | 108, 118 |
| BshFI | GGCC | 2 cut(s) | 29, 149 |
| BsiHKAI | GWGCWC | 1 cut(s) | 165 |
| BsiSI | CCGG | 1 cut(s) | 212 |
| BsmAI | GTCTC | 1 cut(s) | 117 |
| BsnI | GGCC | 2 cut(s) | 29, 149 |
| Bso31I | GGTCTC | 1 cut(s) | 117 |
| Bsp1286I | GDGCHC | 1 cut(s) | 165 |
| BspACI | CCGC | 3 cut(s) | 70, 118, 203 |
| BspANI | GGCC | 2 cut(s) | 29, 149 |
| BspFNI | CGCG | 2 cut(s) | 108, 118 |
| BspTNI | GGTCTC | 1 cut(s) | 117 |
| Bst6I | CTCTTC | 2 cut(s) | 105, 262 |
| BstFNI | CGCG | 2 cut(s) | 108, 118 |
| BstHHI | GCGC | 2 cut(s) | 108, 118 |
| BstMAI | GTCTC | 1 cut(s) | 117 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 103, 200, 214, 217 |
| BstNSI | RCATGY | 1 cut(s) | 194 |
| BstUI | CGCG | 2 cut(s) | 108, 118 |
| BstV1I | GCAGC | 2 cut(s) | 204, 220 |
| BsuRI | GGCC | 2 cut(s) | 29, 149 |
| CfoI | GCGC | 2 cut(s) | 108, 118 |
| Csp6I | GTAC | 1 cut(s) | 279 |
| CviAII | CATG | 1 cut(s) | 191 |
| CviJI | RGCY | 9 cut(s) | 29, 97, 130, 138, 149, 163, 178, 211, 217 |
| CviKI_1 | RGCY | 9 cut(s) | 29, 97, 130, 138, 149, 163, 178, 211, 217 |
| CviQI | GTAC | 1 cut(s) | 279 |
| EaeI | YGGCCR | 1 cut(s) | 27 |
| Eam1104I | CTCTTC | 2 cut(s) | 105, 262 |
| EarI | CTCTTC | 2 cut(s) | 105, 262 |
| Ecl136II | GAGCTC | 1 cut(s) | 163 |
| Eco24I | GRGCYC | 1 cut(s) | 165 |
| Eco31I | GGTCTC | 1 cut(s) | 117 |
| Eco53kI | GAGCTC | 1 cut(s) | 163 |
| EcoICRI | GAGCTC | 1 cut(s) | 163 |
| EcoT38I | GRGCYC | 1 cut(s) | 165 |
| FaeI | CATG | 1 cut(s) | 194 |
| FaiI | YATR | 1 cut(s) | 192 |
| FatI | CATG | 1 cut(s) | 190 |
| Fnu4HI | GCNGC | 3 cut(s) | 71, 209, 218 |
| FriOI | GRGCYC | 1 cut(s) | 165 |
| Fsp4HI | GCNGC | 3 cut(s) | 71, 209, 218 |
| GlaI | GCGC | 2 cut(s) | 107, 117 |
| GluI | GCNGC | 3 cut(s) | 71, 209, 218 |
| HaeIII | GGCC | 2 cut(s) | 29, 149 |
| HapII | CCGG | 1 cut(s) | 212 |
| HhaI | GCGC | 2 cut(s) | 108, 118 |
| Hin1II | CATG | 1 cut(s) | 194 |
| Hin6I | GCGC | 2 cut(s) | 106, 116 |
| HinP1I | GCGC | 2 cut(s) | 106, 116 |
| HpaII | CCGG | 1 cut(s) | 212 |
| HphI | GGTGA | 1 cut(s) | 275 |
| Hpy188I | TCNGA | 1 cut(s) | 38 |
| Hpy99I | CGWCG | 1 cut(s) | 22 |
| HpyCH4IV | ACGT | 1 cut(s) | 153 |
| HpyCH4V | TGCA | 1 cut(s) | 220 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 103, 200, 214, 217 |
| HpySE526I | ACGT | 1 cut(s) | 153 |
| Hsp92II | CATG | 1 cut(s) | 194 |
| HspAI | GCGC | 2 cut(s) | 106, 116 |
| LmnI | GCTCC | 3 cut(s) | 94, 205, 214 |
| LpnPI | CCDG | 6 cut(s) | 59, 124, 140, 225, 246, 255 |
| Lsp1109I | GCAGC | 2 cut(s) | 204, 220 |
| MaeII | ACGT | 1 cut(s) | 153 |
| MboII | GAAGA | 2 cut(s) | 122, 249 |
| MhlI | GDGCHC | 1 cut(s) | 165 |
| MluCI | AATT | 1 cut(s) | 293 |
| MmeI | TCCRAC | 1 cut(s) | 61 |
| MnlI | CCTC | 6 cut(s) | 46, 70, 73, 106, 139, 259 |
| MroXI | GAANNNNTTC | 1 cut(s) | 256 |
| MseI | TTAA | 2 cut(s) | 180, 296 |
| MspI | CCGG | 1 cut(s) | 212 |
| MvnI | CGCG | 2 cut(s) | 108, 118 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 103, 200, 214, 217 |
| NlaIII | CATG | 1 cut(s) | 194 |
| NspI | RCATGY | 1 cut(s) | 194 |
| PdmI | GAANNNNTTC | 1 cut(s) | 256 |
| PkrI | GCNGC | 3 cut(s) | 72, 210, 219 |
| PshBI | ATTAAT | 1 cut(s) | 296 |
| Psp124BI | GAGCTC | 1 cut(s) | 165 |
| RsaI | GTAC | 1 cut(s) | 280 |
| RsaNI | GTAC | 1 cut(s) | 279 |
| SacI | GAGCTC | 1 cut(s) | 165 |
| SaqAI | TTAA | 2 cut(s) | 180, 296 |
| SatI | GCNGC | 3 cut(s) | 71, 209, 218 |
| ScaI | AGTACT | 1 cut(s) | 280 |
| SduI | GDGCHC | 1 cut(s) | 165 |
| SetI | ASST | 6 cut(s) | 57, 99, 156, 165, 180, 219 |
| SmlI | CTYRAG | 1 cut(s) | 47 |
| SmoI | CTYRAG | 1 cut(s) | 47 |
| Sse9I | AATT | 1 cut(s) | 293 |
| SsiI | CCGC | 3 cut(s) | 70, 118, 203 |
| SstI | GAGCTC | 1 cut(s) | 165 |
| TaiI | ACGT | 1 cut(s) | 156 |
| TaqI | TCGA | 2 cut(s) | 57, 165 |
| TasI | AATT | 1 cut(s) | 293 |
| TatI | WGTACW | 1 cut(s) | 278 |
| TauI | GCSGC | 1 cut(s) | 73 |
| Tru1I | TTAA | 2 cut(s) | 180, 296 |
| Tru9I | TTAA | 2 cut(s) | 180, 296 |
| TseI | GCWGC | 2 cut(s) | 208, 217 |
| TspDTI | ATGAA | 2 cut(s) | 17, 198 |
| VspI | ATTAAT | 1 cut(s) | 296 |
| XceI | RCATGY | 1 cut(s) | 194 |
| XmnI | GAANNNNTTC | 1 cut(s) | 256 |
| ZrmI | AGTACT | 1 cut(s) | 280 |