Rmu_sc0003705.1_g000001

ATP synthase gamma chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003705.1
OG0018673
Physical Location & Seq
Forward (+)
259 .. 624
366 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
atgaaacttgtagcggctgctagggtacgaagaggtcaagatgcagtcatcaattgccgacccttctctgagacccttgtggaggttttatacgacatcaatgagcaacttcaaggtgaagacgttgatatccctttgactaatgttagacctgtcaagaaagtagcccttgtggtcattaccagtgatagaggtctgtgtggtggtttcaacaatgcattgactaagaaagcgcagacccgaattgtggagttaaggaaatttggattggaggtggttcttatcagcgttgggaagaagggaaactcgtattttatgcgtaggctggagattaaggtggataggttgatgccaattgcgaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009579 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0022603 GO:0030234 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0050789 GO:0050790 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055035 GO:0055085 GO:0055086 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098772 GO:0098796 GO:0098807 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1905421 GO:2000026 GO:2000067 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt

Protein Analysis

121

Amino Acids

13.55

Weight (kDa)

9.88

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 1 - 113 1.2e-26 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018673)

Species Orthologous Gene IDs
rosa_laevigata RLG00000031524
rosa_multiflora Rmu_sc0003705.1_g000001
rosa_rugosa Rorug02G0034600 Rorug03G0283200 Rorug05G0464800 Rorug06G0294000
rosa_samantha Rh2AG400300 Rh2BG407800 Rh2CG386500 Rh2DG420200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 14
AcsI RAATTY 1 cut(s) 260
AfaI GTAC 1 cut(s) 27
AfiI CCNNNNNNNGG 2 cut(s) 82, 247
AgsI TTSAA 2 cut(s) 113, 211
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
Alw26I GTCTC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 260
AspLEI GCGC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 126
BbvI GCAGC 1 cut(s) 4
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 1 cut(s) 21
BisI GCNGC 2 cut(s) 15, 18
BlsI GCNGC 2 cut(s) 16, 19
BmsI GCATC 2 cut(s) 31, 339
BpiI GAAGAC 1 cut(s) 126
BpmI CTGGAG 1 cut(s) 347
BsaI GGTCTC 1 cut(s) 65
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 247
Bse1I ACTGG 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 82, 247
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 183
BseXI GCAGC 1 cut(s) 4
BslI CCNNNNNNNGG 2 cut(s) 82, 247
BsmAI GTCTC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 65
BspACI CCGC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 65
BsrI ACTGG 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 25
BstDEI CTNAG 2 cut(s) 69, 225
BstENI CCTNNNNNAGG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 190
CfoI GCGC 1 cut(s) 235
Csp6I GTAC 1 cut(s) 26
CviJI RGCY 3 cut(s) 17, 167, 325
CviKI_1 RGCY 3 cut(s) 17, 167, 325
CviQI GTAC 1 cut(s) 26
DdeI CTNAG 2 cut(s) 69, 225
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Eco31I GGTCTC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 80
EcoRV GATATC 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 220
FaiI YATR 2 cut(s) 91, 317
FalI AAGNNNNNCTT 2 cut(s) 153, 185
Fnu4HI GCNGC 2 cut(s) 15, 18
Fsp4HI GCNGC 2 cut(s) 15, 18
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 234
GluI GCNGC 2 cut(s) 15, 18
GsuI CTGGAG 1 cut(s) 347
HhaI GCGC 1 cut(s) 235
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HphI GGTGA 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 38, 157
HpyAV CCTTC 2 cut(s) 73, 292
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 44, 218
HpyF3I CTNAG 2 cut(s) 69, 225
HpySE526I ACGT 1 cut(s) 123
HspAI GCGC 1 cut(s) 233
LpnPI CCDG 3 cut(s) 165, 196, 311
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 2 cut(s) 31, 339
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 123
MboII GAAGA 3 cut(s) 42, 131, 307
MfeI CAATTG 2 cut(s) 52, 354
MluCI AATT 4 cut(s) 52, 243, 260, 354
MnlI CCTC 4 cut(s) 26, 76, 185, 265
Mph1103I ATGCAT 1 cut(s) 220
MseI TTAA 2 cut(s) 254, 333
MunI CAATTG 2 cut(s) 52, 354
NsiI ATGCAT 1 cut(s) 220
PkrI GCNGC 2 cut(s) 16, 19
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SaqAI TTAA 2 cut(s) 254, 333
SatI GCNGC 2 cut(s) 15, 18
SetI ASST 9 cut(s) 37, 87, 118, 126, 154, 196, 276, 339, 347
SfaNI GCATC 2 cut(s) 31, 339
Sse9I AATT 4 cut(s) 52, 243, 260, 354
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 21
TaiI ACGT 1 cut(s) 126
TasI AATT 4 cut(s) 52, 243, 260, 354
TauI GCSGC 1 cut(s) 17
Tru1I TTAA 2 cut(s) 254, 333
Tru9I TTAA 2 cut(s) 254, 333
TscAI CASTG 1 cut(s) 190
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 190
XagI CCTNNNNNAGG 1 cut(s) 80
XapI RAATTY 1 cut(s) 260
XspI CTAG 1 cut(s) 21
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.