Rmu_sc0003840.1_g000008
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003840.1
OG0012839
Physical Location & Seq
Reverse (-)
25585 .. 29345
3761 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3105 bp
atgaatctttcaggaaccctgagccctagcattggtggtttacttcacctaacctcacttgatcttgcatccaatggtttctctggaggcatacccaaggagattggaaactgctcaagtttggaatacctttatctcaatgacaacaagtttactggccaaatacctgctgaattgggtaagctgtccaaattaagaagtttgaatctctgcaacaacaaaatctctggtcctcttcctgaggaacttgggaacttgtcttcactggttgagtttgtggcatacaccaacaatattaccggttcaatacctcattcttttgggaatctcaaaagtttggtaacttttcgagctgggcagaatgctatttctggtagcataccagctgaaataggtggatgtcagaacttgaaactgcttggtcttgctcaaaatgttataggaggggagttacctaaggagcttgggatgctggggagcatgacagatctgattctgtgggataatcaggtttcggggtttattcctaaggagcttggaaattgcagtagtcttgggacgattgctttgtatgagaacaatctcgtggggtcaatacctccagaaattgggaatctcaagtcattgaggaggttgtacctctacaggaatggcttgaatggaaccattcccagggaaattggaaatctttcttttgctgctgagattgatttttcggagaactatttgatgggtgagatcccatatgagttaagtaagataagtggtctaagcttactgtaccttttccagaaccagctcacaggtgtgattccaaatgagcttagtaacttgaggaaattatcaaagcttgacctttcaattaatcaccttgaaggtcttattccatatgggtttcaatatttgactgaattgagccagttacagttgttcgataactctctaaggggtagcatacccctgtggcttgggcgacacagtcgactttgggtagttgatctttcagataactccctaactgggagaatacctccgtacctttgttggcattccaatctaatcttgttgaacctggagtctaatgatctttatggaagtattccaactggagttttgaactgtgaatcattggtgcaacttcgccttgttggaaacaggcttactggcagctttccttctgagttatgcaatttggtgaacctttctgcgattgagttggacgggaacaagttcactgggtctattcctcccgagattaaaaactgccaaaagttgcaaaggcttcacattgcagacaattacttcacatccgagttgcctagggaaataggatatctatctcaattggtaactttcaacatatcatccaattcactcactgggcaaattccgcctgaaattgttaactgcaagatgcttcagcgacttgacctcagtcggaatagattcgaaaatgctttgccaaatgagctgggaacgcttttgcagttggagcttctgaggctttcagaaaatagttttactggaaacataccagcagcactaggaaacctctcacatttgacagagttgcagatgggtggcaacttgttttctggtgaaataccacctgaattgggttctctttcaagcttgcagattgcaatgaatctcagttttaataatctcagcgggagaataccaccagagcttggaaatctaattttacttgaattccttctgctcaataacaataatttgaccggtgaaattcccagcacatttgaaaatttgtcaagcttaatgggctgcaacttctcttacaatgaccttactggatctttacctcccatcccattgttccagaacatggcaattagcagctttatcgggaacaaaggtctttgtggtgggcctcttggtgtgtgcagtgtaaattcatctccaaattctgttccatctctgaatagagtggatactcctcgcagtaaaatcattacaataattgcagctgttgtgggtggtatttctcttattttgattgctgttatcttatatttcatgagacgtccaggtcagacggttccttccatgcaagataaggatactttacctcctgatacagatatatacttacctccaaaggaggggatcacgttccaagacctggttgaggcgacaaataactttcatgacagctatgctgttggaagaggagcttgtggaacagtttacaaggcagtaatgcagtctggacttactattgctgttaagaagctttcagctaaccgggagggcaacaacattgaaaacagtttccaggctgagattttaactctgggaaatataaggcatcggaatattgtgaagctctatggattttgttatcacaagggttccaacctacttctttatgagtacatggaaaagggtagcttgggtgaattacttcatggtgaatcttgcagcttggagtggccaactcgtttcatgattgctcttggagctgctgaaggtcttgcttatttacatcatgactgcaaaccgaggattgtccaccgtgatataaagtccaataatattttgctagatgagaagttcgaagcccatgttggtgactttggtttggcaaaagtgattgatatgcctcattcaaaatcaatgtcagcagttgcaggatcatatggatatattgctcctgagtatgcatacaccatgaaggtcacagaaaaatgtgacatctatagctatggggtagtgctattggagctgctaactggaagaactcctgtacaatcactagatcaaggaggtgatcttgtcacctgggttagacactacgtcagagaacattctttgacatctgggatactcgacagccggttgaatcttcaagacaaaagtatggttgatcacatgcttactgtcctaaagattgctttgatgtgcactagtatgtccccgttcgaccgtccatcaattcgagaagttgtgctgatgcttattgagtctaatgagcaaggagactttgtgccatcgccaacttatgatcttcctttgaaagacgattcagatcttcctttgacagatgattcagatattccattgaaagatgatactcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

1034

Amino Acids

113.27

Weight (kDa)

5.27

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 10 - 113 5.5e-09 Leucine-rich repeat region
LRR_14 PF23598 202 - 308 3e-06 Leucine-rich repeat region
LRR_8 PF13855 424 - 483 3.4e-06 Leucine rich repeat
LRR_14 PF23598 460 - 547 4.5e-08 Leucine-rich repeat region
Pkinase PF00069 724 - 991 1.4e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 728 - 991 9.6e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012839)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33170 AT2G33170
fragaria_vesca FvH4_4g05590 FvH4_4g05590 FvH4_4g05590 FvH4_4g05590 FvH4_4g05590
malus_domestica MD16G1234300.v1.1
prunus_persica Prupe.1G057600_v2.0.a1
pyrus_communis pycom13g20210
rosa_chinensis RchiOBHm_Chr4g0396751
rosa_laevigata RLG00000009506
rosa_multiflora Rmu_sc0000487.1_g000004 Rmu_sc0003840.1_g000008
rosa_roxburghii Rroxscaffold_5G00341590
rosa_rugosa Rorug03G0347700
rosa_samantha Rh4BG069400
rosa_wichuraiana Rw4G005710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2052
AatII GACGTC 1 cut(s) 2050
Acc36I ACCTGC 1 cut(s) 175
AccB7I CCANNNNNTGG 4 cut(s) 608, 1691, 1849, 2146
AccI GTMKAC 1 cut(s) 982
AciI CCGC 2 cut(s) 1391, 1671
AclWI GGATC 4 cut(s) 733, 1825, 2138, 2665
AcoI YGGCCR 2 cut(s) 157, 2456
AcsI RAATTY 6 cut(s) 1386, 1712, 1749, 1768, 1915, 1927
AcuI CTGAAG 2 cut(s) 1403, 2511
AcyI GRCGYC 1 cut(s) 2047
AfaI GTAC 5 cut(s) 638, 782, 1037, 2399, 2772
AgeI ACCGGT 2 cut(s) 299, 1742
AhdI GACNNNNNGTC 1 cut(s) 2819
AhlI ACTAGT 1 cut(s) 2930
AjnI CCWGG 6 cut(s) 671, 1071, 2050, 2145, 2298, 2804
AjuI GAANNNNNNNTTGG 2 cut(s) 2574, 2606
AleI CACNNNNGTG 1 cut(s) 806
Alw21I GWGCWC 1 cut(s) 2930
Alw26I GTCTC 2 cut(s) 2038, 2997
Alw44I GTGCAC 1 cut(s) 2926
AlwI GGATC 4 cut(s) 733, 1825, 2138, 2665
Ama87I CYCGRG 1 cut(s) 1250
AoxI GGCC 3 cut(s) 157, 1892, 2456
ApaLI GTGCAC 1 cut(s) 2926
ApeKI GCWGC 9 cut(s) 698, 1167, 1538, 1788, 1860, 1988, 2445, 2486, 2749
ApoI RAATTY 6 cut(s) 1386, 1712, 1749, 1768, 1915, 1927
ArsI GACNNNNNNTTYG 4 cut(s) 550, 582, 2627, 2659
AseI ATTAAT 1 cut(s) 864
AsiGI ACCGGT 2 cut(s) 299, 1742
Asp700I GAANNNNTTC 5 cut(s) 688, 1229, 1445, 1716, 2427
AspA2I CCTAGG 1 cut(s) 1319
AspS9I GGNCC 2 cut(s) 230, 1892
AsuC2I CCSGG 1 cut(s) 2270
AsuII TTCGAA 2 cut(s) 1449, 2580
AvaI CYCGRG 1 cut(s) 1250
AvaII GGWCC 1 cut(s) 230
AvrII CCTAGG 1 cut(s) 1319
AxyI CCTNAGG 3 cut(s) 240, 456, 528
BaeGI GKGCMC 1 cut(s) 2930
BaeI ACNNNNGTAYC 2 cut(s) 1019, 1052
BalI TGGCCA 2 cut(s) 159, 2458
BanII GRGCYC 1 cut(s) 26
BauI CACGAG 1 cut(s) 584
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 2930
BbvI GCAGC 9 cut(s) 685, 1179, 1550, 1775, 1872, 2000, 2457, 2473, 2736
BccI CCATC 6 cut(s) 724, 1570, 1838, 1945, 2962, 3022
BcgI CGANNNNNNTGC 2 cut(s) 1849, 1883
BciT130I CCWGG 6 cut(s) 673, 1073, 2052, 2147, 2300, 2806
BciVI GTATCC 3 cut(s) 1948, 2077, 2841
BclI TGATCA 1 cut(s) 2890
BcnI CCSGG 1 cut(s) 2270
BcoDI GTCTC 2 cut(s) 2038, 2997
BcuI ACTAGT 1 cut(s) 2930
BfaI CTAG 6 cut(s) 27, 1320, 1544, 2567, 2780, 2931
BfmI CTRYAG 2 cut(s) 643, 2722
BfuAI ACCTGC 1 cut(s) 175
BfuI GTATCC 3 cut(s) 1948, 2077, 2841
BglII AGATCT 2 cut(s) 487, 3052
BisI GCNGC 9 cut(s) 699, 1168, 1539, 1789, 1861, 1989, 2446, 2487, 2750
BlnI CCTAGG 1 cut(s) 1319
BlsI GCNGC 9 cut(s) 700, 1169, 1540, 1790, 1862, 1990, 2447, 2488, 2751
Bme1390I CCNGG 7 cut(s) 673, 1073, 2052, 2147, 2270, 2300, 2806
Bme18I GGWCC 1 cut(s) 230
BmeRI GACNNNNNGTC 1 cut(s) 2819
BmeT110I CYCGRG 1 cut(s) 1250
BmgT120I GGNCC 2 cut(s) 230, 1892
BmiI GGNNCC 4 cut(s) 16, 664, 2064, 2377
BmrFI CCNGG 7 cut(s) 673, 1073, 2052, 2147, 2270, 2300, 2806
BmrI ACTGGG 3 cut(s) 1029, 1245, 1389
BmsI GCATC 5 cut(s) 77, 459, 1404, 2341, 2967
BmuI ACTGGG 3 cut(s) 1029, 1245, 1389
BoxI GACNNNNGTC 1 cut(s) 1434
BpiI GAAGAC 1 cut(s) 252
BplI GAGNNNNNCTC 2 cut(s) 1015, 1047
BpmI CTGGAG 4 cut(s) 105, 585, 1094, 1128
Bpu10I CCTNAGC 1 cut(s) 20
Bpu14I TTCGAA 2 cut(s) 1449, 2580
BpuEI CTTGAG 3 cut(s) 100, 602, 853
BpuMI CCSGG 1 cut(s) 2270
BsaBI GATNNNNATC 2 cut(s) 1336, 3051
BsaHI GRCGYC 1 cut(s) 2047
BsaJI CCNNGG 6 cut(s) 96, 671, 672, 1319, 2525, 2805
BsaWI WCCGGW 2 cut(s) 299, 1742
BsaXI ACNNNNNCTCC 4 cut(s) 2077, 2107, 2994, 3024
Bse118I RCCGGY 3 cut(s) 299, 1742, 2859
Bse21I CCTNAGG 3 cut(s) 240, 456, 528
Bse3DI GCAATG 2 cut(s) 1287, 1650
Bse8I GATNNNNATC 2 cut(s) 1336, 3051
BseBI CCWGG 6 cut(s) 673, 1073, 2052, 2147, 2300, 2806
BseDI CCNNGG 6 cut(s) 96, 671, 672, 1319, 2525, 2805
BseGI GGATG 6 cut(s) 68, 404, 474, 1307, 1364, 1830
BseJI GATNNNNATC 2 cut(s) 1336, 3051
BseMI GCAATG 2 cut(s) 1287, 1650
BseRI GAGGAG 3 cut(s) 643, 1950, 2208
BseSI GKGCMC 1 cut(s) 2930
BseXI GCAGC 9 cut(s) 685, 1179, 1550, 1775, 1872, 2000, 2457, 2473, 2736
BseYI CCCAGC 4 cut(s) 353, 472, 1471, 1754
BsgI GTGCAG 1 cut(s) 1927
Bsh1285I CGRYCG 1 cut(s) 2950
BshFI GGCC 3 cut(s) 159, 1894, 2458
BshTI ACCGGT 2 cut(s) 299, 1742
BsiEI CGRYCG 1 cut(s) 2950
BsiHKAI GWGCWC 1 cut(s) 2930
BsiHKCI CYCGRG 1 cut(s) 1250
BsiSI CCGG 4 cut(s) 300, 1743, 2269, 2860
BslFI GGGAC 2 cut(s) 571, 2923
BsmAI GTCTC 2 cut(s) 2038, 2997
BsmBI CGTCTC 1 cut(s) 2038
BsmFI GGGAC 2 cut(s) 571, 2923
BsmI GAATGC 2 cut(s) 367, 1048
BsnI GGCC 3 cut(s) 159, 1894, 2458
BsoBI CYCGRG 1 cut(s) 1250
Bsp119I TTCGAA 2 cut(s) 1449, 2580
Bsp1286I GDGCHC 2 cut(s) 26, 2930
Bsp1407I TGTACA 1 cut(s) 2770
BspACI CCGC 2 cut(s) 1391, 1671
BspANI GGCC 3 cut(s) 159, 1894, 2458
BspHI TCATGA 4 cut(s) 2040, 2170, 2469, 2512
BspLI GGNNCC 4 cut(s) 16, 664, 2064, 2377
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 4 cut(s) 733, 1825, 2138, 2665
BspT104I TTCGAA 2 cut(s) 1449, 2580
BsrDI GCAATG 2 cut(s) 1287, 1650
BsrFI RCCGGY 3 cut(s) 299, 1742, 2859
BsrGI TGTACA 1 cut(s) 2770
BssAI RCCGGY 3 cut(s) 299, 1742, 2859
BssECI CCNNGG 6 cut(s) 96, 671, 672, 1319, 2525, 2805
BssNI GRCGYC 1 cut(s) 2047
BssSI CACGAG 1 cut(s) 584
BssT1I CCWWGG 2 cut(s) 96, 1319
Bst2BI CACGAG 1 cut(s) 584
Bst2UI CCWGG 6 cut(s) 673, 1073, 2052, 2147, 2300, 2806
Bst6I CTCTTC 2 cut(s) 240, 2185
BstACI GRCGYC 1 cut(s) 2047
BstAUI TGTACA 1 cut(s) 2770
BstBI TTCGAA 2 cut(s) 1449, 2580
BstC8I GCNNGC 1 cut(s) 1634
BstENI CCTNNNNNAGG 1 cut(s) 2150
BstF5I GGATG 6 cut(s) 68, 404, 474, 1307, 1364, 1830
BstMAI GTCTC 2 cut(s) 2038, 2997
BstMCI CGRYCG 1 cut(s) 2950
BstMWI GCNNNNNNNGC 9 cut(s) 469, 1390, 1468, 1477, 1492, 1501, 1785, 2483, 2746
BstNI CCWGG 6 cut(s) 673, 1073, 2052, 2147, 2300, 2806
BstNSI RCATGY 1 cut(s) 2899
BstPAI GACNNNNGTC 1 cut(s) 1434
BstSCI CCNGG 7 cut(s) 671, 1071, 2050, 2145, 2268, 2298, 2804
BstSFI CTRYAG 2 cut(s) 643, 2722
BstSLI GKGCMC 1 cut(s) 2930
BstV1I GCAGC 9 cut(s) 685, 1179, 1550, 1775, 1872, 2000, 2457, 2473, 2736
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 4 cut(s) 487, 738, 1817, 3052
BstYI RGATCY 4 cut(s) 487, 738, 1817, 3052
Bsu36I CCTNAGG 3 cut(s) 240, 456, 528
BsuI GTATCC 3 cut(s) 1948, 2077, 2841
BsuRI GGCC 3 cut(s) 159, 1894, 2458
BtgZI GCGATG 1 cut(s) 3000
BtsCI GGATG 6 cut(s) 68, 404, 474, 1307, 1364, 1830
BtsI GCAGTG 1 cut(s) 1915
BtsIMutI CAGTG 4 cut(s) 263, 1233, 1377, 1915
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 1634
CciI TCATGA 4 cut(s) 2040, 2170, 2469, 2512
Cfr10I RCCGGY 3 cut(s) 299, 1742, 2859
Cfr13I GGNCC 2 cut(s) 230, 1892
CsiI ACCWGGT 1 cut(s) 2145
Csp6I GTAC 5 cut(s) 637, 781, 1036, 2398, 2771
CspAI ACCGGT 2 cut(s) 299, 1742
CspCI CAANNNNNGTGG 2 cut(s) 1596, 1631
CviQI GTAC 5 cut(s) 637, 781, 1036, 2398, 2771
DrdI GACNNNNNNGTC 1 cut(s) 2052
DriI GACNNNNNGTC 1 cut(s) 2819
DseDI GACNNNNNNGTC 1 cut(s) 2052
EaeI YGGCCR 2 cut(s) 157, 2456
Eam1104I CTCTTC 2 cut(s) 240, 2185
Eam1105I GACNNNNNGTC 1 cut(s) 2819
EarI CTCTTC 2 cut(s) 240, 2185
EciI GGCGGA 1 cut(s) 1380
Eco130I CCWWGG 2 cut(s) 96, 1319
Eco24I GRGCYC 1 cut(s) 26
Eco32I GATATC 1 cut(s) 1334
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 2 cut(s) 1403, 2511
Eco81I CCTNAGG 3 cut(s) 240, 456, 528
Eco88I CYCGRG 1 cut(s) 1250
EcoNI CCTNNNNNAGG 1 cut(s) 2150
EcoRI GAATTC 1 cut(s) 1712
EcoRII CCWGG 6 cut(s) 671, 1071, 2050, 2145, 2298, 2804
EcoRV GATATC 1 cut(s) 1334
EcoT14I CCWWGG 2 cut(s) 96, 1319
EcoT22I ATGCAT 1 cut(s) 2689
EcoT38I GRGCYC 1 cut(s) 26
ErhI CCWWGG 2 cut(s) 96, 1319
Esp3I CGTCTC 1 cut(s) 2038
FalI AAGNNNNNCTT 4 cut(s) 2182, 2214, 2399, 2431
FaqI GGGAC 2 cut(s) 571, 2923
FauI CCCGC 1 cut(s) 1664
FauNDI CATATG 3 cut(s) 745, 889, 2662
FbaI TGATCA 1 cut(s) 2890
FblI GTMKAC 1 cut(s) 982
Fnu4HI GCNGC 9 cut(s) 699, 1168, 1539, 1789, 1861, 1989, 2446, 2487, 2750
FokI GGATG 6 cut(s) 55, 411, 481, 1294, 1351, 1817
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 9 cut(s) 699, 1168, 1539, 1789, 1861, 1989, 2446, 2487, 2750
FspBI CTAG 6 cut(s) 27, 1320, 1544, 2567, 2780, 2931
GluI GCNGC 9 cut(s) 699, 1168, 1539, 1789, 1861, 1989, 2446, 2487, 2750
GsaI CCCAGC 4 cut(s) 357, 476, 1475, 1758
GsuI CTGGAG 4 cut(s) 105, 585, 1094, 1128
HaeIII GGCC 3 cut(s) 159, 1894, 2458
HapII CCGG 4 cut(s) 300, 1743, 2269, 2860
Hin1I GRCGYC 1 cut(s) 2047
HincII GTYRAC 2 cut(s) 983, 1405
HindII GTYRAC 2 cut(s) 983, 1405
HindIII AAGCTT 5 cut(s) 772, 848, 1630, 1777, 2255
HpaI GTTAAC 1 cut(s) 1405
HpaII CCGG 4 cut(s) 300, 1743, 2269, 2860
Hpy166II GTNNAC 9 cut(s) 41, 153, 983, 1198, 1233, 1405, 2212, 2536, 2928
Hpy8I GTNNAC 9 cut(s) 41, 153, 983, 1198, 1233, 1405, 2212, 2536, 2928
HpyAV CCTTC 6 cut(s) 869, 1185, 1727, 2076, 2486, 2692
HpyCH4IV ACGT 3 cut(s) 2047, 2135, 2820
HpyF10VI GCNNNNNNNGC 9 cut(s) 469, 1390, 1468, 1477, 1492, 1501, 1785, 2483, 2746
HpySE526I ACGT 3 cut(s) 2047, 2135, 2820
Hsp92I GRCGYC 1 cut(s) 2047
Ksp22I TGATCA 1 cut(s) 2890
KspAI GTTAAC 1 cut(s) 1405
LmnI GCTCC 8 cut(s) 460, 477, 532, 1492, 2195, 2483, 2680, 2746
Lsp1109I GCAGC 9 cut(s) 685, 1179, 1550, 1775, 1872, 2000, 2457, 2473, 2736
LweI GCATC 5 cut(s) 77, 459, 1404, 2341, 2967
MabI ACCWGGT 1 cut(s) 2145
MaeI CTAG 6 cut(s) 27, 1320, 1544, 2567, 2780, 2931
MaeII ACGT 3 cut(s) 2047, 2135, 2820
MaeIII GTNAC 9 cut(s) 340, 450, 827, 921, 1348, 2594, 2701, 2714, 2800
MboII GAAGA 7 cut(s) 227, 252, 2202, 2772, 2861, 3023, 3047
MfeI CAATTG 1 cut(s) 1343
MflI RGATCY 4 cut(s) 487, 738, 1817, 3052
MhlI GDGCHC 2 cut(s) 26, 2930
MlsI TGGCCA 2 cut(s) 159, 2458
MluNI TGGCCA 2 cut(s) 159, 2458
MlyI GAGTC 2 cut(s) 1085, 2996
MmeI TCCRAC 7 cut(s) 1127, 1129, 1197, 1418, 1470, 2167, 2403
Mox20I TGGCCA 2 cut(s) 159, 2458
Mph1103I ATGCAT 1 cut(s) 2689
MroXI GAANNNNTTC 5 cut(s) 688, 1229, 1445, 1716, 2427
MscI TGGCCA 2 cut(s) 159, 2458
MseI TTAA 9 cut(s) 194, 752, 864, 1257, 1404, 1659, 1781, 2250, 2312
MslI CAYNNNNRTG 3 cut(s) 806, 2592, 2933
Msp20I TGGCCA 2 cut(s) 159, 2458
MspA1I CMGCKG 3 cut(s) 386, 1671, 1991
MspI CCGG 4 cut(s) 300, 1743, 2269, 2860
MspR9I CCNGG 7 cut(s) 673, 1073, 2052, 2147, 2270, 2300, 2806
MunI CAATTG 1 cut(s) 1343
Mva1269I GAATGC 2 cut(s) 367, 1048
MvaI CCWGG 6 cut(s) 673, 1073, 2052, 2147, 2300, 2806
MwoI GCNNNNNNNGC 9 cut(s) 469, 1390, 1468, 1477, 1492, 1501, 1785, 2483, 2746
NciI CCSGG 1 cut(s) 2270
NdeI CATATG 3 cut(s) 745, 889, 2662
NlaIV GGNNCC 4 cut(s) 16, 664, 2064, 2377
NmuCI GTSAC 4 cut(s) 2594, 2701, 2714, 2800
NsiI ATGCAT 1 cut(s) 2689
NspI RCATGY 1 cut(s) 2899
NspV TTCGAA 2 cut(s) 1449, 2580
OliI CACNNNNGTG 1 cut(s) 806
PagI TCATGA 4 cut(s) 2040, 2170, 2469, 2512
PasI CCCWGGG 1 cut(s) 672
PctI GAATGC 2 cut(s) 367, 1048
PdmI GAANNNNTTC 5 cut(s) 688, 1229, 1445, 1716, 2427
PflFI GACNNNGTC 1 cut(s) 978
PflMI CCANNNNNTGG 4 cut(s) 608, 1691, 1849, 2146
PinAI ACCGGT 2 cut(s) 299, 1742
PkrI GCNGC 9 cut(s) 700, 1169, 1540, 1790, 1862, 1990, 2447, 2488, 2751
PleI GAGTC 2 cut(s) 1084, 2995
PpsI GAGTC 2 cut(s) 1084, 2995
PshAI GACNNNNGTC 1 cut(s) 1434
PshBI ATTAAT 1 cut(s) 864
Psp6I CCWGG 6 cut(s) 671, 1071, 2050, 2145, 2298, 2804
PspFI CCCAGC 4 cut(s) 353, 472, 1471, 1754
PspGI CCWGG 6 cut(s) 671, 1071, 2050, 2145, 2298, 2804
PspN4I GGNNCC 4 cut(s) 16, 664, 2064, 2377
PspPI GGNCC 2 cut(s) 230, 1892
PsuI RGATCY 4 cut(s) 487, 738, 1817, 3052
PsyI GACNNNGTC 1 cut(s) 978
PvuII CAGCTG 2 cut(s) 386, 1991
RsaI GTAC 5 cut(s) 638, 782, 1037, 2399, 2772
RsaNI GTAC 5 cut(s) 637, 781, 1036, 2398, 2771
RseI CAYNNNNRTG 3 cut(s) 806, 2592, 2933
SalI GTCGAC 1 cut(s) 981
SaqAI TTAA 9 cut(s) 194, 752, 864, 1257, 1404, 1659, 1781, 2250, 2312
SatI GCNGC 9 cut(s) 699, 1168, 1539, 1789, 1861, 1989, 2446, 2487, 2750
Sau96I GGNCC 2 cut(s) 230, 1892
SchI GAGTC 2 cut(s) 1085, 2996
ScrFI CCNGG 7 cut(s) 673, 1073, 2052, 2147, 2270, 2300, 2806
SduI GDGCHC 2 cut(s) 26, 2930
SexAI ACCWGGT 1 cut(s) 2145
SfaNI GCATC 5 cut(s) 77, 459, 1404, 2341, 2967
SfcI CTRYAG 2 cut(s) 643, 2722
SfuI TTCGAA 2 cut(s) 1449, 2580
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 3 cut(s) 806, 2592, 2933
SmlI CTYRAG 3 cut(s) 115, 617, 832
SmoI CTYRAG 3 cut(s) 115, 617, 832
SpeI ACTAGT 1 cut(s) 2930
SsiI CCGC 2 cut(s) 1391, 1671
SspI AATATT 4 cut(s) 295, 902, 2341, 2560
SspMI CTAG 6 cut(s) 27, 1320, 1544, 2567, 2780, 2931
StyD4I CCNGG 7 cut(s) 671, 1071, 2050, 2145, 2268, 2298, 2804
StyI CCWWGG 2 cut(s) 96, 1319
TaiI ACGT 3 cut(s) 2050, 2138, 2823
TaqI TCGA 9 cut(s) 349, 933, 982, 1449, 2580, 2853, 2946, 2962, 3100
TatI WGTACW 2 cut(s) 2397, 2770
Tru1I TTAA 9 cut(s) 194, 752, 864, 1257, 1404, 1659, 1781, 2250, 2312
Tru9I TTAA 9 cut(s) 194, 752, 864, 1257, 1404, 1659, 1781, 2250, 2312
TscAI CASTG 4 cut(s) 270, 1240, 1384, 1915
TseFI GTSAC 4 cut(s) 2594, 2701, 2714, 2800
TseI GCWGC 9 cut(s) 698, 1167, 1538, 1788, 1860, 1988, 2445, 2486, 2749
Tsp45I GTSAC 4 cut(s) 2594, 2701, 2714, 2800
TspDTI ATGAA 8 cut(s) 17, 1661, 1908, 2029, 2159, 2420, 2458, 2711
TspGWI ACGGA 1 cut(s) 1023
TspRI CASTG 4 cut(s) 270, 1240, 1384, 1915
Tth111I GACNNNGTC 1 cut(s) 978
Van91I CCANNNNNTGG 4 cut(s) 608, 1691, 1849, 2146
VneI GTGCAC 1 cut(s) 2926
VpaK11BI GGWCC 1 cut(s) 230
VspI ATTAAT 1 cut(s) 864
XagI CCTNNNNNAGG 1 cut(s) 2150
XapI RAATTY 6 cut(s) 1386, 1712, 1749, 1768, 1915, 1927
XceI RCATGY 1 cut(s) 2899
XmaJI CCTAGG 1 cut(s) 1319
XmiI GTMKAC 1 cut(s) 982
XmnI GAANNNNTTC 5 cut(s) 688, 1229, 1445, 1716, 2427
XspI CTAG 6 cut(s) 27, 1320, 1544, 2567, 2780, 2931
ZraI GACGTC 1 cut(s) 2048
Zsp2I ATGCAT 1 cut(s) 2689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.