Rorug03G0347700
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0012839
Physical Location & Seq
Reverse (-)
42321708 .. 42324931
3224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0347700.1

Sequence Viewer

Length: 1062 bp
ATGTTCCTGAGGCCTCCAACAGCATCCTCTACTTTGTGGGAACCGTCTCCGAAAGGTGCTTGCCTCAGTACCATAGATTTCAAGCCGCCTCAATTATCAACTGCGAGTTCATATAATCTTGGCTTGAAGTTTGAGCATGGAAAGCTTCGTAAAGGGGGAAGTACATGCAGAACCATCTACTCTGTCAGTAGGAAGCCCAGTGTAGAACCAACTTTCAGGAAGCGAGATGCATCTCCCCAAAATGAGGATCTTCCAGCTGTACTACCTAAGCAAAAGAAAAAACCATATCCCATTCCCTTAAAGAAGATTAAGCAGGCTGCAAAGGTGAACAAAAAACTTGCAGAAAAGGGTATAGAAAAGCCGCTCGACCCTCCAAAAAATGGATTACTTGACCCTGATCTAATTCCTGTTGCTCATCAAGTACTGCATGCCTGGAAAGCTTTGATTAAAGGCCTTGCACAGCTGTTGCATGTTATTCCAGTATATGGTTGCCTTGAATGCTCTGAGGTCCATGTAGCCCATTCTGGCCATCACATTCAGGACTGTCTTGATGCAATCCATCCTGCTGATGTTGGACTTAAAGAGGAAAATCCAGATGATGATCGAGGGCTTGGTTTTTTCAGAGACAATCTAAATAGAGTTTCTCGATGGACTCAACCAATAACATACTTCAATTTATATGAAGGTGATAGTTTTACGATGTGTATATTCTGTTTTCCTACTTCCTCAGTCATTCCACTTCATGATCACCTTGGCATGACTGTTTTTAGCAAAGTTCTGTATGGTTCTTTGCATGTGAGAGCTTACGATTGGGTGGAGCCTTCCCACGAAAGCAAGGGATCAAATTACTTTCCAGGAGATGAGATGACTCGAATTTTCTGGAAATCAATCAAGGATAAGCTTATTCTCCCCTTTTTGGATTTGGACATTAAGTACTTTGACCTTGGTCTTCCTCACCGTGATACCACTGATGATAAAGTTACCGTTGAAAGTTCAGAGGCTACTCTTAAGAGGATTAGAATGGGGCTGCTCCAGCTAGAAGTGTTCTGGTGTGGATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

353

Amino Acids

39.81

Weight (kDa)

8.63

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
APO_RNA-bind PF05634 71 - 183 7e-48 APO RNA-binding
PCO_ADO PF07847 183 - 281 7.8e-32 PCO_ADO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012839)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33170 AT2G33170
fragaria_vesca FvH4_4g05590 FvH4_4g05590 FvH4_4g05590 FvH4_4g05590 FvH4_4g05590
malus_domestica MD16G1234300.v1.1
prunus_persica Prupe.1G057600_v2.0.a1
pyrus_communis pycom13g20210
rosa_chinensis RchiOBHm_Chr4g0396751
rosa_laevigata RLG00000009506
rosa_multiflora Rmu_sc0000487.1_g000004 Rmu_sc0003840.1_g000008
rosa_roxburghii Rroxscaffold_5G00341590
rosa_rugosa Rorug03G0347700
rosa_samantha Rh4BG069400
rosa_wichuraiana Rw4G005710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 380, 485
AccBSI CCGCTC 1 cut(s) 364
AciI CCGC 2 cut(s) 86, 362
AclWI GGATC 3 cut(s) 255, 847, 1050
AcoI YGGCCR 1 cut(s) 526
AcsI RAATTY 1 cut(s) 873
AfaI GTAC 5 cut(s) 70, 163, 261, 423, 935
AfiI CCNNNNNNNGG 4 cut(s) 244, 380, 485, 916
AflII CTTAAG 1 cut(s) 1007
AgsI TTSAA 5 cut(s) 82, 127, 497, 673, 989
AjnI CCWGG 2 cut(s) 431, 853
AluBI AGCT 7 cut(s) 145, 257, 440, 463, 803, 901, 1036
AluI AGCT 7 cut(s) 145, 257, 440, 463, 803, 901, 1036
Alw26I GTCTC 2 cut(s) 51, 618
AlwI GGATC 3 cut(s) 255, 847, 1050
AoxI GGCC 3 cut(s) 11, 451, 526
ApeKI GCWGC 2 cut(s) 317, 1027
ApoI RAATTY 1 cut(s) 873
AspS9I GGNCC 1 cut(s) 508
AsuHPI GGTGA 4 cut(s) 337, 698, 740, 947
AvaII GGWCC 1 cut(s) 508
AxyI CCTNAGG 1 cut(s) 8
BalI TGGCCA 1 cut(s) 528
BamHI GGATCC 1 cut(s) 1055
BbsI GAAGAC 1 cut(s) 941
BbvI GCAGC 2 cut(s) 304, 1014
BccI CCATC 4 cut(s) 182, 537, 567, 642
BciT130I CCWGG 2 cut(s) 433, 855
BclI TGATCA 1 cut(s) 745
BcoDI GTCTC 2 cut(s) 51, 618
BfaI CTAG 1 cut(s) 1037
BfrI CTTAAG 1 cut(s) 1007
BisI GCNGC 4 cut(s) 86, 318, 362, 1028
BlsI GCNGC 4 cut(s) 87, 319, 363, 1029
BmcAI AGTACT 2 cut(s) 423, 935
Bme1390I CCNGG 2 cut(s) 433, 855
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 3 cut(s) 42, 819, 1057
BmrFI CCNGG 2 cut(s) 433, 855
BmrI ACTGGG 1 cut(s) 192
BmsI GCATC 4 cut(s) 32, 217, 239, 541
BmuI ACTGGG 1 cut(s) 192
BoxI GACNNNNGTC 1 cut(s) 945
BpiI GAAGAC 1 cut(s) 941
BpmI CTGGAG 1 cut(s) 1016
Bpu10I CCTNAGC 1 cut(s) 267
BsaBI GATNNNNATC 1 cut(s) 600
BsaJI CCNNGG 2 cut(s) 751, 943
Bsc4I CCNNNNNNNGG 4 cut(s) 244, 380, 485, 916
Bse1I ACTGG 2 cut(s) 198, 479
Bse21I CCTNAGG 1 cut(s) 8
Bse8I GATNNNNATC 1 cut(s) 600
BseBI CCWGG 2 cut(s) 433, 855
BseDI CCNNGG 2 cut(s) 751, 943
BseGI GGATG 2 cut(s) 23, 559
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 4 cut(s) 244, 380, 485, 916
BseMII CTCAG 3 cut(s) 79, 495, 741
BseNI ACTGG 2 cut(s) 198, 479
BseXI GCAGC 2 cut(s) 304, 1014
BshFI GGCC 3 cut(s) 13, 453, 528
BslI CCNNNNNNNGG 4 cut(s) 244, 380, 485, 916
BsmAI GTCTC 2 cut(s) 51, 618
BsmBI CGTCTC 1 cut(s) 51
BsmI GAATGC 1 cut(s) 503
BsnI GGCC 3 cut(s) 13, 453, 528
Bsp143I GATC 6 cut(s) 247, 397, 601, 745, 839, 1055
BspACI CCGC 2 cut(s) 86, 362
BspANI GGCC 3 cut(s) 13, 453, 528
BspCNI CTCAG 3 cut(s) 78, 496, 740
BspHI TCATGA 1 cut(s) 742
BspLI GGNNCC 3 cut(s) 42, 819, 1057
BspPI GGATC 3 cut(s) 255, 847, 1050
BspTI CTTAAG 1 cut(s) 1007
BsrBI CCGCTC 1 cut(s) 364
BsrI ACTGG 2 cut(s) 198, 479
BssECI CCNNGG 2 cut(s) 751, 943
BssMI GATC 6 cut(s) 247, 397, 601, 745, 839, 1055
BssT1I CCWWGG 2 cut(s) 751, 943
Bst2UI CCWGG 2 cut(s) 433, 855
Bst4CI ACNGT 5 cut(s) 45, 545, 763, 959, 985
BstAFI CTTAAG 1 cut(s) 1007
BstC8I GCNNGC 3 cut(s) 61, 315, 429
BstDEI CTNAG 5 cut(s) 8, 65, 267, 504, 727
BstF5I GGATG 2 cut(s) 23, 559
BstKTI GATC 6 cut(s) 250, 400, 604, 748, 842, 1058
BstMAI GTCTC 2 cut(s) 51, 618
BstMBI GATC 6 cut(s) 247, 397, 601, 745, 839, 1055
BstMWI GCNNNNNNNGC 4 cut(s) 142, 437, 498, 1033
BstNI CCWGG 2 cut(s) 433, 855
BstNSI RCATGY 4 cut(s) 168, 431, 473, 797
BstPAI GACNNNNGTC 1 cut(s) 945
BstSCI CCNGG 2 cut(s) 431, 853
BstV1I GCAGC 2 cut(s) 304, 1014
BstV2I GAAGAC 1 cut(s) 941
BstX2I RGATCY 2 cut(s) 247, 1055
BstYI RGATCY 2 cut(s) 247, 1055
Bsu36I CCTNAGG 1 cut(s) 8
BsuRI GGCC 3 cut(s) 13, 453, 528
BtsCI GGATG 2 cut(s) 23, 559
BtsIMutI CAGTG 2 cut(s) 205, 966
Cac8I GCNNGC 3 cut(s) 61, 315, 429
CciI TCATGA 1 cut(s) 742
Cfr13I GGNCC 1 cut(s) 508
Csp6I GTAC 5 cut(s) 69, 162, 260, 422, 934
CviAII CATG 8 cut(s) 137, 165, 428, 470, 512, 743, 757, 794
CviQI GTAC 5 cut(s) 69, 162, 260, 422, 934
DdeI CTNAG 5 cut(s) 8, 65, 267, 504, 727
DpnI GATC 6 cut(s) 249, 399, 603, 747, 841, 1057
DpnII GATC 6 cut(s) 247, 397, 601, 745, 839, 1055
EaeI YGGCCR 1 cut(s) 526
Eco130I CCWWGG 2 cut(s) 751, 943
Eco147I AGGCCT 2 cut(s) 13, 453
Eco47I GGWCC 1 cut(s) 508
Eco81I CCTNAGG 1 cut(s) 8
EcoRII CCWGG 2 cut(s) 431, 853
EcoT14I CCWWGG 2 cut(s) 751, 943
EcoT22I ATGCAT 1 cut(s) 232
ErhI CCWWGG 2 cut(s) 751, 943
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 8 cut(s) 140, 168, 431, 473, 515, 746, 760, 797
FatI CATG 8 cut(s) 136, 164, 427, 469, 511, 742, 756, 793
FbaI TGATCA 1 cut(s) 745
Fnu4HI GCNGC 4 cut(s) 86, 318, 362, 1028
FokI GGATG 2 cut(s) 10, 546
Fsp4HI GCNGC 4 cut(s) 86, 318, 362, 1028
FspBI CTAG 1 cut(s) 1037
GluI GCNGC 4 cut(s) 86, 318, 362, 1028
GsuI CTGGAG 1 cut(s) 1016
HaeIII GGCC 3 cut(s) 13, 453, 528
Hin1II CATG 8 cut(s) 140, 168, 431, 473, 515, 746, 760, 797
HindIII AAGCTT 3 cut(s) 143, 438, 899
HinfI GANTC 2 cut(s) 652, 868
HphI GGTGA 4 cut(s) 337, 698, 740, 947
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 4 cut(s) 51, 505, 623, 997
Hpy188III TCNNGA 8 cut(s) 7, 217, 539, 548, 593, 645, 743, 880
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 2 cut(s) 677, 831
HpyCH4III ACNGT 5 cut(s) 45, 545, 763, 959, 985
HpyCH4V TGCA 9 cut(s) 168, 230, 320, 341, 427, 458, 469, 554, 793
HpyF10VI GCNNNNNNNGC 4 cut(s) 142, 437, 498, 1033
HpyF3I CTNAG 5 cut(s) 8, 65, 267, 504, 727
Hsp92II CATG 8 cut(s) 140, 168, 431, 473, 515, 746, 760, 797
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 6 cut(s) 247, 397, 601, 745, 839, 1055
LmnI GCTCC 2 cut(s) 817, 1035
Lsp1109I GCAGC 2 cut(s) 304, 1014
LweI GCATC 4 cut(s) 32, 217, 239, 541
MaeI CTAG 1 cut(s) 1037
MaeIII GTNAC 1 cut(s) 979
MalI GATC 6 cut(s) 249, 399, 603, 747, 841, 1057
MbiI CCGCTC 1 cut(s) 364
MboI GATC 6 cut(s) 247, 397, 601, 745, 839, 1055
MboII GAAGA 3 cut(s) 242, 316, 941
MflI RGATCY 2 cut(s) 247, 1055
MlsI TGGCCA 1 cut(s) 528
MluCI AATT 5 cut(s) 92, 402, 673, 844, 873
MluNI TGGCCA 1 cut(s) 528
MlyI GAGTC 2 cut(s) 646, 862
MmeI TCCRAC 2 cut(s) 41, 553
Mox20I TGGCCA 1 cut(s) 528
Mph1103I ATGCAT 1 cut(s) 232
MscI TGGCCA 1 cut(s) 528
MseI TTAA 6 cut(s) 299, 309, 447, 579, 930, 1008
Msp20I TGGCCA 1 cut(s) 528
MspA1I CMGCKG 2 cut(s) 257, 463
MspCI CTTAAG 1 cut(s) 1007
MspR9I CCNGG 2 cut(s) 433, 855
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 2 cut(s) 433, 855
MwoI GCNNNNNNNGC 4 cut(s) 142, 437, 498, 1033
NdeII GATC 6 cut(s) 247, 397, 601, 745, 839, 1055
NlaIII CATG 8 cut(s) 140, 168, 431, 473, 515, 746, 760, 797
NlaIV GGNNCC 3 cut(s) 42, 819, 1057
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 4 cut(s) 168, 431, 473, 797
PaeI GCATGC 1 cut(s) 431
PagI TCATGA 1 cut(s) 742
PceI AGGCCT 2 cut(s) 13, 453
PctI GAATGC 1 cut(s) 503
PflMI CCANNNNNTGG 2 cut(s) 380, 485
PfoI TCCNGGA 1 cut(s) 853
PkrI GCNGC 4 cut(s) 87, 319, 363, 1029
PleI GAGTC 2 cut(s) 646, 862
PpsI GAGTC 2 cut(s) 646, 862
PshAI GACNNNNGTC 1 cut(s) 945
Psp6I CCWGG 2 cut(s) 431, 853
PspGI CCWGG 2 cut(s) 431, 853
PspN4I GGNNCC 3 cut(s) 42, 819, 1057
PspPI GGNCC 1 cut(s) 508
PsuI RGATCY 2 cut(s) 247, 1055
PvuII CAGCTG 2 cut(s) 257, 463
RsaI GTAC 5 cut(s) 70, 163, 261, 423, 935
RsaNI GTAC 5 cut(s) 69, 162, 260, 422, 934
SaqAI TTAA 6 cut(s) 299, 309, 447, 579, 930, 1008
SatI GCNGC 4 cut(s) 86, 318, 362, 1028
Sau3AI GATC 6 cut(s) 247, 397, 601, 745, 839, 1055
Sau96I GGNCC 1 cut(s) 508
ScaI AGTACT 2 cut(s) 423, 935
SchI GAGTC 2 cut(s) 646, 862
ScrFI CCNGG 2 cut(s) 433, 855
SfaNI GCATC 4 cut(s) 32, 217, 239, 541
SinI GGWCC 1 cut(s) 508
SmlI CTYRAG 1 cut(s) 1007
SmoI CTYRAG 1 cut(s) 1007
SphI GCATGC 1 cut(s) 431
Sse9I AATT 5 cut(s) 92, 402, 673, 844, 873
SseBI AGGCCT 2 cut(s) 13, 453
SsiI CCGC 2 cut(s) 86, 362
SspMI CTAG 1 cut(s) 1037
StuI AGGCCT 2 cut(s) 13, 453
StyD4I CCNGG 2 cut(s) 431, 853
StyI CCWWGG 2 cut(s) 751, 943
TaaI ACNGT 5 cut(s) 45, 545, 763, 959, 985
TaqI TCGA 4 cut(s) 366, 604, 646, 871
TasI AATT 5 cut(s) 92, 402, 673, 844, 873
TatI WGTACW 4 cut(s) 161, 259, 421, 933
TauI GCSGC 2 cut(s) 88, 364
Tru1I TTAA 6 cut(s) 299, 309, 447, 579, 930, 1008
Tru9I TTAA 6 cut(s) 299, 309, 447, 579, 930, 1008
TscAI CASTG 2 cut(s) 205, 973
TseI GCWGC 2 cut(s) 317, 1027
TspDTI ATGAA 3 cut(s) 99, 696, 731
TspRI CASTG 2 cut(s) 205, 973
Van91I CCANNNNNTGG 2 cut(s) 380, 485
Vha464I CTTAAG 1 cut(s) 1007
VpaK11BI GGWCC 1 cut(s) 508
XapI RAATTY 1 cut(s) 873
XceI RCATGY 4 cut(s) 168, 431, 473, 797
XspI CTAG 1 cut(s) 1037
ZrmI AGTACT 2 cut(s) 423, 935
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.