Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003876.1

Orthogroup ID

OG0020740

Physical Location & Seq

Genomic Coordinates Reverse (-)

17323 .. 19384

Gene Structure 2062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003876.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgagtactgagttacaatttgaatctgccaaagcagataccggaaagcaaccagatgcaatattatcttcacacagctatgcatttatggttgagcaagaatggtttcagaataatttatcaaattttagagacgtcaaagatatggaaaacattcctgtgtcggctatgatggaaacccttttcttctccaaccatgccaagcgtttgatcaagaagtcaggtcaagggacgccccgacgattgcaccccacggctgctaaggctggtagcgcgtttaacatcactcaggtggtgcaaggtgaggtcatgatggatggcttcatgcccatccctgtcccagagaacgtgagcatcgaggagaggcttgctatcttccagcaaaacaacgcctcgaataatgagaagataagaaaaaggctggcggaagagcgacggaggattgttgatcttgttaatatggtccaagtcctggggcaaggtttgcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

163

Amino Acids

18.44

Weight (kDa)

6.85

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020740)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003876.1_g000007
rosa_roxburghii	Rroxscaffold_2G00095400
rosa_rugosa	Rorug07G0233400.1
rosa_samantha	Rh7AG369900 Rh7BG367800 Rh7CG388800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	138
AccB7I	CCANNNNNTGG	1 cut(s)	472
AccII	CGCG	1 cut(s)	275
AciI	CCGC	1 cut(s)	425
AcsI	RAATTY	1 cut(s)	124
AcyI	GRCGYC	2 cut(s)	135, 233
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	472
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	471
AleI	CACNNNNGTG	1 cut(s)	290
AluBI	AGCT	1 cut(s)	78
AluI	AGCT	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	124
Asp700I	GAANNNNTTC	2 cut(s)	105, 153
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	463
AsuHPI	GGTGA	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	463
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	4 cut(s)	166, 307, 311, 338
BceAI	ACGGC	1 cut(s)	270
BciT130I	CCWGG	1 cut(s)	473
BclI	TGATCA	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	126
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
BmcAI	AGTACT	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	473
Bme18I	GGWCC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	463
BmrFI	CCNGG	1 cut(s)	473
BmsI	GCATC	2 cut(s)	46, 363
Bpu10I	CCTNAGC	1 cut(s)	261
BsaHI	GRCGYC	2 cut(s)	135, 233
BsaJI	CCNNGG	2 cut(s)	252, 472
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	473
BseDI	CCNNGG	2 cut(s)	252, 472
BseGI	GGATG	2 cut(s)	322, 330
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMII	CTCAG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	2 cut(s)	244, 323
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmAI	GTCTC	1 cut(s)	126
BsmBI	CGTCTC	1 cut(s)	126
BsmFI	GGGAC	2 cut(s)	244, 323
Bsp143I	GATC	2 cut(s)	210, 448
BspACI	CCGC	1 cut(s)	425
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	1 cut(s)	275
BspHI	TCATGA	1 cut(s)	309
BspQI	GCTCTTC	1 cut(s)	423
BssECI	CCNNGG	2 cut(s)	252, 472
BssMI	GATC	2 cut(s)	210, 448
BssNI	GRCGYC	2 cut(s)	135, 233
Bst2UI	CCWGG	1 cut(s)	473
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	2 cut(s)	135, 233
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	369, 423
BstDEI	CTNAG	3 cut(s)	9, 261, 288
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	322, 330
BstFNI	CGCG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	2 cut(s)	213, 451
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	2 cut(s)	210, 448
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 272, 484
BstNI	CCWGG	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	471
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	244
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	322, 330
Cac8I	GCNNGC	2 cut(s)	369, 423
CciI	TCATGA	1 cut(s)	309
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	463
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	3 cut(s)	197, 310, 325
CviJI	RGCY	7 cut(s)	78, 167, 257, 266, 321, 367, 421
CviKI_1	RGCY	7 cut(s)	78, 167, 257, 266, 321, 367, 421
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	3 cut(s)	9, 261, 288
DpnI	GATC	2 cut(s)	212, 450
DpnII	GATC	2 cut(s)	210, 448
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
EciI	GGCGGA	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	471
EcoT22I	ATGCAT	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	126
FaeI	CATG	3 cut(s)	200, 313, 328
FaiI	YATR	8 cut(s)	81, 89, 146, 170, 198, 311, 326, 461
FaqI	GGGAC	2 cut(s)	244, 323
FatI	CATG	3 cut(s)	196, 309, 324
FbaI	TGATCA	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	2 cut(s)	317, 329
Fsp4HI	GCNGC	1 cut(s)	258
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	1 cut(s)	258
HapII	CCGG	1 cut(s)	42
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	1 cut(s)	275
Hin1I	GRCGYC	2 cut(s)	135, 233
Hin1II	CATG	3 cut(s)	200, 313, 328
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	1 cut(s)	314
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	2 cut(s)	214, 310
Hpy99I	CGWCG	2 cut(s)	243, 438
HpyCH4IV	ACGT	2 cut(s)	135, 348
HpyCH4V	TGCA	5 cut(s)	59, 83, 247, 298, 487
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 272, 484
HpyF3I	CTNAG	3 cut(s)	9, 261, 288
HpySE526I	ACGT	2 cut(s)	135, 348
Hsp92I	GRCGYC	2 cut(s)	135, 233
Hsp92II	CATG	3 cut(s)	200, 313, 328
HspAI	GCGC	1 cut(s)	273
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	210, 448
LguI	GCTCTTC	1 cut(s)	423
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	2 cut(s)	46, 363
MaeII	ACGT	2 cut(s)	135, 348
MaeIII	GTNAC	1 cut(s)	12
MalI	GATC	2 cut(s)	212, 450
MboI	GATC	2 cut(s)	210, 448
MboII	GAAGA	5 cut(s)	60, 178, 367, 418, 440
MluCI	AATT	3 cut(s)	17, 115, 124
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	5 cut(s)	298, 352, 357, 403, 432
Mph1103I	ATGCAT	1 cut(s)	85
MroXI	GAANNNNTTC	2 cut(s)	105, 153
MseI	TTAA	2 cut(s)	279, 456
MslI	CAYNNNNRTG	3 cut(s)	78, 158, 290
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	473
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	3 cut(s)	263, 272, 484
NdeII	GATC	2 cut(s)	210, 448
NlaIII	CATG	3 cut(s)	200, 313, 328
NsiI	ATGCAT	1 cut(s)	85
OliI	CACNNNNGTG	1 cut(s)	290
PagI	TCATGA	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	423
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PdmI	GAANNNNTTC	2 cut(s)	105, 153
PfeI	GAWTC	1 cut(s)	23
PflMI	CCANNNNNTGG	1 cut(s)	472
PkrI	GCNGC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	463
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	3 cut(s)	78, 158, 290
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	279, 456
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	210, 448
Sau96I	GGNCC	1 cut(s)	463
ScaI	AGTACT	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	473
SetI	ASST	8 cut(s)	80, 138, 226, 294, 304, 309, 351, 484
SfaNI	GCATC	2 cut(s)	46, 363
SinI	GGWCC	1 cut(s)	463
SmiMI	CAYNNNNRTG	3 cut(s)	78, 158, 290
Sse9I	AATT	3 cut(s)	17, 115, 124
SsiI	CCGC	1 cut(s)	425
SspI	AATATT	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	471
TaiI	ACGT	2 cut(s)	138, 351
TaqI	TCGA	2 cut(s)	357, 395
TasI	AATT	3 cut(s)	17, 115, 124
TatI	WGTACW	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	2 cut(s)	279, 456
Tru9I	TTAA	2 cut(s)	279, 456
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	313
TspGWI	ACGGA	1 cut(s)	451
Van91I	CCANNNNNTGG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	463
XapI	RAATTY	1 cut(s)	124
XmnI	GAANNNNTTC	2 cut(s)	105, 153
ZraI	GACGTC	1 cut(s)	136
ZrmI	AGTACT	1 cut(s)	7
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.