Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0020740

Physical Location & Seq

Genomic Coordinates Forward (+)

39308001 .. 39329864

Gene Structure 21864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG367800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAGGTCAAATAATCAAACTGTTGGCGGCTGCATGTCAACTTGTGGTGACAACACCGCCGGCAATGGTTGTATTGGTACTAACTGTTGTCAGACTACTCTTCCTCAATATCTGAATGAGATCAGTACTGAGTTGCAATCTGAATATGCAGAAGCCGATAGCGGAAAGAAACCTGATGCAATATTATCTGCCCATAGCTATGCATTTATGGTTGAGCAAGACTGGTTTCAGAATAATATATCAAATTTTGGAGACATCAAGGATATGGACAACGTTCCTATGGTGCTAGAATGGAGGTTAAGCTTAGACAAGAACAGTTCATCATTCACATCGGTTAGTTATGTTTCAGATATCGATGAGTGTCAGGAAAACATTTCGTGTATGGGCCATGATATCGTTGCCCAAAAATGGAATTTCAATGGTGGTTCTTGTCAAAATACTGATGGGGGTCATATATGCTACTCGAGTATAGATAGCGTTGCTTGTGAATTTCATGGTGGTTGGAGAGGTGCTGTATGCTCTACAACCAGACCCTACAATTCTGGTTTGTTCCATCAGCGCAACCAGTTGAGCCCCGCTGTTTTTGGTGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

198

Amino Acids

21.65

Weight (kDa)

4.55

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020740)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003876.1_g000007
rosa_roxburghii	Rroxscaffold_2G00095400
rosa_rugosa	Rorug07G0233400.1
rosa_samantha	Rh7AG369900 Rh7BG367800 Rh7CG388800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	27, 57, 162, 576
AclI	AACGTT	1 cut(s)	273
AcsI	RAATTY	3 cut(s)	244, 412, 488
AfaI	GTAC	2 cut(s)	79, 127
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	1 cut(s)	418
AluBI	AGCT	2 cut(s)	198, 303
AluI	AGCT	2 cut(s)	198, 303
Alw26I	GTCTC	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	463
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	3 cut(s)	244, 412, 488
AspLEI	GCGC	1 cut(s)	561
AspS9I	GGNCC	1 cut(s)	385
AsuHPI	GGTGA	1 cut(s)	59
AvaI	CYCGRG	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	575
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	437, 561
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	1 cut(s)	287
BisI	GCNGC	2 cut(s)	28, 31
BlsI	GCNGC	2 cut(s)	29, 32
BmcAI	AGTACT	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	385
BmsI	GCATC	1 cut(s)	166
Bsa29I	ATCGAT	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	2 cut(s)	227, 565
Bse3DI	GCAATG	1 cut(s)	70
BseCI	ATCGAT	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	227, 565
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	387
BshVI	ATCGAT	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	463
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	387
BsoBI	CYCGRG	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	575
Bsp143I	GATC	1 cut(s)	120
BspACI	CCGC	4 cut(s)	27, 57, 162, 576
BspANI	GGCC	1 cut(s)	387
BspCNI	CTCAG	1 cut(s)	121
BspDI	ATCGAT	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	227, 565
BssAI	RCCGGY	1 cut(s)	59
BssMI	GATC	1 cut(s)	120
Bst4CI	ACNGT	3 cut(s)	22, 86, 317
Bst6I	CTCTTC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	129, 304
BstHHI	GCGC	1 cut(s)	561
BstKTI	GATC	1 cut(s)	123
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	1 cut(s)	120
BstNSI	RCATGY	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	387
BsuTUI	ATCGAT	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	61
CfoI	GCGC	1 cut(s)	561
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	385
ClaI	ATCGAT	1 cut(s)	354
Csp6I	GTAC	2 cut(s)	78, 126
CviAII	CATG	3 cut(s)	34, 389, 494
CviJI	RGCY	6 cut(s)	30, 155, 198, 303, 387, 573
CviKI_1	RGCY	6 cut(s)	30, 155, 198, 303, 387, 573
CviQI	GTAC	2 cut(s)	78, 126
DdeI	CTNAG	2 cut(s)	129, 304
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	575
Eco32I	GATATC	2 cut(s)	352, 394
Eco88I	CYCGRG	1 cut(s)	463
EcoRV	GATATC	2 cut(s)	352, 394
EcoT22I	ATGCAT	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	575
FaeI	CATG	3 cut(s)	37, 392, 497
FatI	CATG	3 cut(s)	33, 388, 493
FauI	CCCGC	1 cut(s)	583
Fnu4HI	GCNGC	2 cut(s)	28, 31
FriOI	GRGCYC	1 cut(s)	575
Fsp4HI	GCNGC	2 cut(s)	28, 31
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	1 cut(s)	560
GluI	GCNGC	2 cut(s)	28, 31
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	1 cut(s)	60
HhaI	GCGC	1 cut(s)	561
Hin1II	CATG	3 cut(s)	37, 392, 497
Hin6I	GCGC	1 cut(s)	559
HinP1I	GCGC	1 cut(s)	559
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	301
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	5 cut(s)	93, 114, 142, 231, 349
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	1 cut(s)	39
HpyCH4III	ACNGT	3 cut(s)	22, 86, 317
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	5 cut(s)	33, 136, 149, 179, 203
HpyF3I	CTNAG	2 cut(s)	129, 304
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	3 cut(s)	37, 392, 497
HspAI	GCGC	1 cut(s)	559
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	120
LpnPI	CCDG	7 cut(s)	73, 186, 208, 350, 528, 541, 578
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	1 cut(s)	122
MboI	GATC	1 cut(s)	120
MboII	GAAGA	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	575
MluCI	AATT	5 cut(s)	244, 412, 488, 538, 592
MmeI	TCCRAC	1 cut(s)	482
MnlI	CCTC	3 cut(s)	114, 288, 500
Mph1103I	ATGCAT	1 cut(s)	205
MroNI	GCCGGC	1 cut(s)	59
MseI	TTAA	2 cut(s)	299, 591
MslI	CAYNNNNRTG	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	1 cut(s)	60
NaeI	GCCGGC	1 cut(s)	61
NdeII	GATC	1 cut(s)	120
NgoMIV	GCCGGC	1 cut(s)	59
NlaIII	CATG	3 cut(s)	37, 392, 497
NmuCI	GTSAC	1 cut(s)	47
NsiI	ATGCAT	1 cut(s)	205
NspI	RCATGY	1 cut(s)	37
PaeR7I	CTCGAG	1 cut(s)	463
PdiI	GCCGGC	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	29, 32
Psp1406I	AACGTT	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	385
PspXI	VCTCGAGB	1 cut(s)	463
RsaI	GTAC	2 cut(s)	79, 127
RsaNI	GTAC	2 cut(s)	78, 126
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	299, 591
SatI	GCNGC	2 cut(s)	28, 31
Sau3AI	GATC	1 cut(s)	120
Sau96I	GGNCC	1 cut(s)	385
ScaI	AGTACT	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	575
SetI	ASST	7 cut(s)	8, 175, 200, 276, 299, 305, 511
SfaNI	GCATC	1 cut(s)	166
Sfr274I	CTCGAG	1 cut(s)	463
SlaI	CTCGAG	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
Sse9I	AATT	5 cut(s)	244, 412, 488, 538, 592
SsiI	CCGC	4 cut(s)	27, 57, 162, 576
SspI	AATATT	1 cut(s)	183
SspMI	CTAG	1 cut(s)	287
TaaI	ACNGT	3 cut(s)	22, 86, 317
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	354, 464
TasI	AATT	5 cut(s)	244, 412, 488, 538, 592
TatI	WGTACW	1 cut(s)	125
TauI	GCSGC	1 cut(s)	30
Tru1I	TTAA	2 cut(s)	299, 591
Tru9I	TTAA	2 cut(s)	299, 591
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	309, 482
XapI	RAATTY	3 cut(s)	244, 412, 488
XceI	RCATGY	1 cut(s)	37
XhoI	CTCGAG	1 cut(s)	463
XspI	CTAG	1 cut(s)	287
ZrmI	AGTACT	1 cut(s)	127
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.