Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0020740

Physical Location & Seq

Genomic Coordinates Forward (+)

49110052 .. 49110904

Gene Structure 853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG388800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGTTGACCAAGAATGGTTTCAGAATAATATATCAAATTTTGGAGACATCAAGGATATGGACAATGTTCCTGTGGTGCTAGAATGGAGGTTAAGCTTAGACAAGAATAGTTCATCATTCACATCGTATGAAAAATTCATTGTAAAGACAGATTTGGGTTTTACTTTATCGAGTATACCATACATGGATAATTCATTACTTGATTCCTTACAATATTTTCGGAATATAACGTTGCAACAAGATGACGACCCAACACCGTATTGTAATTTATTTAATGCCACTTCTCCGACAAATAATCTTCCAGTGCTTCAGTGTTTCTGTCCGGCCAGCTATTATGGAAACCCCTTTCTTGTCCAACCTTGTCAAGGCTTAGTTATGTTTCAGATATCGATGTGTCAGGAAGACATTCCGTGTATGGGCTATGATATCGCTGCCCAAAAATGGAATTTCAGTAGTGGTTCTTGTCAAAATACTTATGGGGGTCATATATGCTACTCGAGTATAGATAGCGTTGCTTGTGAATTTCATGGTGGATGGAGTGGTGCTGTATGCTTCACAACCAGTCCCGACAATCCTGGCCCGTTCCATCAGCACAACCAATTGAGCCCTGCTGTTTTTGGTATGCTTCCTATATTCTTTAGAATTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

216

Amino Acids

24.34

Weight (kDa)

4.34

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020740)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003876.1_g000007
rosa_roxburghii	Rroxscaffold_2G00095400
rosa_rugosa	Rorug07G0233400.1
rosa_samantha	Rh7AG369900 Rh7BG367800 Rh7CG388800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	175
AclI	AACGTT	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	5 cut(s)	37, 134, 445, 521, 642
AcuI	CTGAAG	1 cut(s)	293
AfiI	CCNNNNNNNGG	3 cut(s)	365, 416, 441
AjnI	CCWGG	1 cut(s)	574
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AluBI	AGCT	2 cut(s)	96, 330
AluI	AGCT	2 cut(s)	96, 330
Alw26I	GTCTC	1 cut(s)	39
Ama87I	CYCGRG	1 cut(s)	496
AoxI	GGCC	2 cut(s)	324, 577
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	5 cut(s)	37, 134, 445, 521, 642
Asp700I	GAANNNNTTC	2 cut(s)	18, 405
AspS9I	GGNCC	1 cut(s)	578
AvaI	CYCGRG	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	2 cut(s)	528, 594
BciT130I	CCWGG	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	80
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
Bme1390I	CCNGG	1 cut(s)	576
BmeT110I	CYCGRG	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	578
BmrFI	CCNGG	1 cut(s)	576
BpiI	GAAGAC	1 cut(s)	408
Bsa29I	ATCGAT	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 416, 441
Bse1I	ACTGG	2 cut(s)	302, 561
BseBI	CCWGG	1 cut(s)	576
BseCI	ATCGAT	1 cut(s)	389
BseGI	GGATG	1 cut(s)	539
BseLI	CCNNNNNNNGG	3 cut(s)	365, 416, 441
BseNI	ACTGG	2 cut(s)	302, 561
BseXI	GCAGC	1 cut(s)	418
BshFI	GGCC	2 cut(s)	326, 579
BshVI	ATCGAT	1 cut(s)	389
BsiHKCI	CYCGRG	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	3 cut(s)	365, 416, 441
BsmAI	GTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	549
BsnI	GGCC	2 cut(s)	326, 579
BsoBI	CYCGRG	1 cut(s)	496
Bsp1286I	GDGCHC	1 cut(s)	608
BspANI	GGCC	2 cut(s)	326, 579
BspDI	ATCGAT	1 cut(s)	389
BsrI	ACTGG	2 cut(s)	302, 561
BssNAI	GTATAC	1 cut(s)	176
Bst1107I	GTATAC	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	97, 370
BstENI	CCTNNNNNAGG	1 cut(s)	363
BstF5I	GGATG	1 cut(s)	539
BstMAI	GTCTC	1 cut(s)	39
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	574
BstV1I	GCAGC	1 cut(s)	418
BstV2I	GAAGAC	1 cut(s)	408
BstZ17I	GTATAC	1 cut(s)	176
Bsu15I	ATCGAT	1 cut(s)	389
BsuRI	GGCC	2 cut(s)	326, 579
BsuTUI	ATCGAT	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	539
BtsIMutI	CAGTG	2 cut(s)	309, 317
Cac8I	GCNNGC	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	578
ClaI	ATCGAT	1 cut(s)	389
CviAII	CATG	2 cut(s)	184, 527
CviJI	RGCY	7 cut(s)	96, 326, 330, 369, 420, 579, 606
CviKI_1	RGCY	7 cut(s)	96, 326, 330, 369, 420, 579, 606
DdeI	CTNAG	2 cut(s)	97, 370
EaeI	YGGCCR	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	608
Eco32I	GATATC	2 cut(s)	387, 427
Eco57I	CTGAAG	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	496
EcoNI	CCTNNNNNAGG	1 cut(s)	363
EcoRI	GAATTC	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	574
EcoRV	GATATC	2 cut(s)	387, 427
EcoT38I	GRGCYC	1 cut(s)	608
FaeI	CATG	2 cut(s)	187, 530
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	2 cut(s)	183, 526
FblI	GTMKAC	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	1 cut(s)	546
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	326, 579
HapII	CCGG	1 cut(s)	323
Hin1II	CATG	2 cut(s)	187, 530
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	7, 176
Hpy188I	TCNGA	4 cut(s)	24, 222, 288, 384
Hpy188III	TCNNGA	2 cut(s)	398, 566
Hpy8I	GTNNAC	2 cut(s)	7, 176
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	1 cut(s)	235
HpyF3I	CTNAG	2 cut(s)	97, 370
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	2 cut(s)	187, 530
LpnPI	CCDG	9 cut(s)	84, 315, 336, 340, 383, 561, 574, 588, 621
Lsp1109I	GCAGC	1 cut(s)	418
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	230
MboII	GAAGA	2 cut(s)	290, 413
MfeI	CAATTG	1 cut(s)	599
MhlI	GDGCHC	1 cut(s)	608
MluCI	AATT	8 cut(s)	37, 134, 190, 265, 445, 521, 599, 642
MmeI	TCCRAC	2 cut(s)	311, 379
MnlI	CCTC	1 cut(s)	81
MroXI	GAANNNNTTC	2 cut(s)	18, 405
MseI	TTAA	2 cut(s)	92, 273
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	576
MunI	CAATTG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	576
NlaIII	CATG	2 cut(s)	187, 530
PaeR7I	CTCGAG	1 cut(s)	496
PdmI	GAANNNNTTC	2 cut(s)	18, 405
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	433
Psp1406I	AACGTT	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspPI	GGNCC	1 cut(s)	578
PspXI	VCTCGAGB	1 cut(s)	496
SaqAI	TTAA	2 cut(s)	92, 273
SatI	GCNGC	1 cut(s)	432
Sau96I	GGNCC	1 cut(s)	578
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	1 cut(s)	608
SetI	ASST	5 cut(s)	92, 98, 233, 332, 361
Sfr274I	CTCGAG	1 cut(s)	496
SlaI	CTCGAG	1 cut(s)	496
SmlI	CTYRAG	1 cut(s)	496
SmoI	CTYRAG	1 cut(s)	496
Sse9I	AATT	8 cut(s)	37, 134, 190, 265, 445, 521, 599, 642
SspI	AATATT	1 cut(s)	215
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	574
TaaI	ACNGT	1 cut(s)	258
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	3 cut(s)	170, 389, 497
TasI	AATT	8 cut(s)	37, 134, 190, 265, 445, 521, 599, 642
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	92, 273
Tru9I	TTAA	2 cut(s)	92, 273
TscAI	CASTG	2 cut(s)	309, 317
TseI	GCWGC	1 cut(s)	431
TspDTI	ATGAA	5 cut(s)	102, 127, 144, 183, 515
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	2 cut(s)	309, 317
XagI	CCTNNNNNAGG	1 cut(s)	363
XapI	RAATTY	5 cut(s)	37, 134, 445, 521, 642
XhoI	CTCGAG	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	175
XmnI	GAANNNNTTC	2 cut(s)	18, 405
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.