Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0020740

Physical Location & Seq

Genomic Coordinates Forward (+)

16767060 .. 16769823

Gene Structure 2764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGCATGCAGTTGGTGGGTGCATGTCAACATGTGGTGATCACACAACTTTTGGCTGCATCGTTATTCCCGGTGATACTTCCGCCATATCTCACTGCAATTGCTACTGAGATCATAGAATATATATCCTCCGGAGACAACTATGCATTCCTGATCGAGCAAAAATCGTTCTTGAATAATTTGTCGAGCTTCAGAGCTATACATGATGTGGACAGCGTTCCAGTGGTGCTAGATTGGAGCTTCGTGCTAGACAATAATAGTTCATCTTTCAAAACATTTGAACGATTCATTGCCAACACTTATCCGATCAGTCTTGACGTATCAGCATCCTTTCCTATGGATTGGGTAGCGCTTTCCTCAGTAGACGAGCATGGCTCGACACCCTATTGCATAAAATATGACGCTAGCACTCCTTCGGCAAACAACACGTCAATGCTTCGATGCACTGTTACCAAGATCGCGGATCGTTGTGGTACGGATATGCGATTCAAACTGACCCATAAAAATCTCAAACAAATCCTCGGTGGCATCGATTTGGAGGAGACGGAGATGTGTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

186

Amino Acids

20.67

Weight (kDa)

4.94

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020740)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003876.1_g000007
rosa_roxburghii	Rroxscaffold_2G00095400
rosa_rugosa	Rorug07G0233400.1
rosa_samantha	Rh7AG369900 Rh7BG367800 Rh7CG388800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	363
AccII	CGCG	1 cut(s)	461
AccIII	TCCGGA	1 cut(s)	131
AciI	CCGC	2 cut(s)	83, 461
AclWI	GGATC	1 cut(s)	471
AcuI	CTGAAG	1 cut(s)	175
AfaI	GTAC	1 cut(s)	475
AfeI	AGCGCT	1 cut(s)	351
AflIII	ACRYGT	2 cut(s)	31, 426
AgsI	TTSAA	4 cut(s)	175, 271, 281, 490
AjiI	CACGTC	1 cut(s)	429
AluBI	AGCT	3 cut(s)	189, 197, 240
AluI	AGCT	3 cut(s)	189, 197, 240
Alw26I	GTCTC	2 cut(s)	129, 536
AlwI	GGATC	1 cut(s)	471
Aor13HI	TCCGGA	1 cut(s)	131
Aor51HI	AGCGCT	1 cut(s)	351
ApeKI	GCWGC	1 cut(s)	56
ArsI	GACNNNNNNTTYG	2 cut(s)	413, 445
AspLEI	GCGC	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	2 cut(s)	49, 85
AsuNHI	GCTAGC	1 cut(s)	404
BbvI	GCAGC	1 cut(s)	43
BclI	TGATCA	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	129, 536
BfaI	CTAG	3 cut(s)	230, 248, 405
BfoI	RGCGCY	1 cut(s)	353
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	71
BmgBI	CACGTC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	4 cut(s)	68, 335, 431, 537
BmtI	GCTAGC	1 cut(s)	408
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
BpuMI	CCSGG	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	520
BsaWI	WCCGGW	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	288
BseAI	TCCGGA	1 cut(s)	131
BseCI	ATCGAT	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	1 cut(s)	326
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	99, 372
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	554
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	461
BshVI	ATCGAT	1 cut(s)	531
BsiSI	CCGG	2 cut(s)	71, 132
BsmAI	GTCTC	2 cut(s)	129, 536
BsmBI	CGTCTC	1 cut(s)	536
BsmI	GAATGC	1 cut(s)	146
Bsp13I	TCCGGA	1 cut(s)	131
Bsp143I	GATC	6 cut(s)	39, 111, 153, 306, 456, 463
BspACI	CCGC	2 cut(s)	83, 461
BspCNI	CTCAG	2 cut(s)	100, 371
BspDI	ATCGAT	1 cut(s)	531
BspEI	TCCGGA	1 cut(s)	131
BspFNI	CGCG	1 cut(s)	461
BspOI	GCTAGC	1 cut(s)	408
BspPI	GGATC	1 cut(s)	471
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	6 cut(s)	39, 111, 153, 306, 456, 463
Bst4CI	ACNGT	1 cut(s)	448
BstC8I	GCNNGC	2 cut(s)	8, 406
BstDEI	CTNAG	2 cut(s)	108, 358
BstF5I	GGATG	1 cut(s)	326
BstFNI	CGCG	1 cut(s)	461
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	6 cut(s)	42, 114, 156, 309, 459, 466
BstMAI	GTCTC	2 cut(s)	129, 536
BstMBI	GATC	6 cut(s)	39, 111, 153, 306, 456, 463
BstNSI	RCATGY	3 cut(s)	10, 27, 35
BstSCI	CCNGG	1 cut(s)	69
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	1 cut(s)	43
Bsu15I	ATCGAT	1 cut(s)	531
BsuTUI	ATCGAT	1 cut(s)	531
BtrI	CACGTC	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	326
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	3 cut(s)	93, 228, 444
Cac8I	GCNNGC	2 cut(s)	8, 406
CfoI	GCGC	1 cut(s)	352
ClaI	ATCGAT	1 cut(s)	531
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	5 cut(s)	7, 24, 32, 203, 371
CviJI	RGCY	5 cut(s)	56, 189, 197, 240, 375
CviKI_1	RGCY	5 cut(s)	56, 189, 197, 240, 375
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	2 cut(s)	108, 358
DpnI	GATC	6 cut(s)	41, 113, 155, 308, 458, 465
DpnII	GATC	6 cut(s)	39, 111, 153, 306, 456, 463
EciI	GGCGGA	1 cut(s)	72
Eco47III	AGCGCT	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	148
Esp3I	CGTCTC	1 cut(s)	536
FaeI	CATG	5 cut(s)	10, 27, 35, 206, 374
FatI	CATG	5 cut(s)	6, 23, 31, 202, 370
FbaI	TGATCA	1 cut(s)	39
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	3 cut(s)	230, 248, 405
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	353
HapII	CCGG	2 cut(s)	71, 132
HgaI	GACGC	1 cut(s)	410
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	5 cut(s)	10, 27, 35, 206, 374
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HinfI	GANTC	2 cut(s)	285, 486
HpaII	CCGG	2 cut(s)	71, 132
HphI	GGTGA	2 cut(s)	49, 85
Hpy166II	GTNNAC	3 cut(s)	29, 211, 364
Hpy188I	TCNGA	2 cut(s)	194, 306
Hpy188III	TCNNGA	4 cut(s)	132, 151, 172, 314
Hpy8I	GTNNAC	3 cut(s)	29, 211, 364
HpyAV	CCTTC	1 cut(s)	423
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	2 cut(s)	318, 428
HpyCH4V	TGCA	7 cut(s)	10, 23, 59, 98, 146, 390, 444
HpyF3I	CTNAG	2 cut(s)	108, 358
HpySE526I	ACGT	2 cut(s)	318, 428
Hsp92II	CATG	5 cut(s)	10, 27, 35, 206, 374
HspAI	GCGC	1 cut(s)	350
Kpn2I	TCCGGA	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	6 cut(s)	39, 111, 153, 306, 456, 463
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	4 cut(s)	84, 145, 164, 234
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	4 cut(s)	68, 335, 431, 537
MaeI	CTAG	3 cut(s)	230, 248, 405
MaeII	ACGT	2 cut(s)	318, 428
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	6 cut(s)	41, 113, 155, 308, 458, 465
MboI	GATC	6 cut(s)	39, 111, 153, 306, 456, 463
MfeI	CAATTG	1 cut(s)	99
MluCI	AATT	2 cut(s)	99, 178
MnlI	CCTC	4 cut(s)	139, 367, 530, 532
Mph1103I	ATGCAT	1 cut(s)	148
MroI	TCCGGA	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	431
MspI	CCGG	2 cut(s)	71, 132
MspR9I	CCNGG	1 cut(s)	71
MunI	CAATTG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	146
MvnI	CGCG	1 cut(s)	461
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	6 cut(s)	39, 111, 153, 306, 456, 463
NheI	GCTAGC	1 cut(s)	404
NlaIII	CATG	5 cut(s)	10, 27, 35, 206, 374
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	3 cut(s)	10, 27, 35
PaeI	GCATGC	1 cut(s)	10
PciI	ACATGT	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	528
PctI	GAATGC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	285, 486
PkrI	GCNGC	1 cut(s)	58
PscI	ACATGT	1 cut(s)	31
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
RseI	CAYNNNNRTG	1 cut(s)	431
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	6 cut(s)	39, 111, 153, 306, 456, 463
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	5 cut(s)	191, 199, 242, 321, 431
SfaNI	GCATC	4 cut(s)	68, 335, 431, 537
SmiMI	CAYNNNNRTG	1 cut(s)	431
SphI	GCATGC	1 cut(s)	10
Sse9I	AATT	2 cut(s)	99, 178
SsiI	CCGC	2 cut(s)	83, 461
SspMI	CTAG	3 cut(s)	230, 248, 405
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	2 cut(s)	321, 431
TaqI	TCGA	5 cut(s)	156, 185, 377, 439, 531
TasI	AATT	2 cut(s)	99, 178
TfiI	GAWTC	2 cut(s)	285, 486
TscAI	CASTG	3 cut(s)	100, 228, 451
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	252, 277
TspGWI	ACGGA	2 cut(s)	491, 560
TspRI	CASTG	3 cut(s)	100, 228, 451
XceI	RCATGY	3 cut(s)	10, 27, 35
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	3 cut(s)	230, 248, 405
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.