Rmu_sc0003878.1_g000002

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003878.1
OG0023102
Physical Location & Seq
Forward (+)
16762 .. 22624
5863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003878.1_g000002.1.cds

Sequence Viewer

Length: 1281 bp
atggattaccatgggcaaaacgagtatttgttagatggaataatcataaccaaagcccttacctgtaaggcaagaagtccttttccggaagacagagaaaagaaccttgtgacgaggttggtgctctcctcgtccacatcgtttgatcaagaagtcaggtcaagagattctccgacgactgcaccccacgcggaggcaatccaatcactctctgccatcctcctctccctcatctacggcctctgccgccgctcgatcgacgccgttgtctgcatccccaagatcttccgatttgagccggcgctcgcccagacggaattggctccagtgctattcgaggagctcttcctcatccacctcctcttggttctccaatgctatgaaaacgacgacgtttcgatcaacgacatgtcggtggcttttgaggtggggtcgaattcgctgtcgaagatgagtgggaaccagatggcgggattgaaggagatggagagcagctacgagagggttttggatgagaattgtagggaagtgatgagttccggtatgatgatcggagcaccggagaagatgaagcgtgaggagcagtggcgctggagcttgcggtgtgcgtgtgggaaccgggatcgacgtatggtcgtgattggctcgggtttcagtctggattcgactggtgatggtggtgttgtgagatggtggtcggaagtggtggtcttcgatgatggcagaggaagagaagaagaagagagagagatcctacaaattccacccacaaaacaggaggaatccctaaagaataaaccaaaaacagaaaacccagagcccagacccaggcccaagcccaaactcgtaggcccccaacccatgaacctagagaaaaccctacgccacagatctgctgccttcatgacaccaccgttggcaaccttcagagtcacaccagtgcaacagttgcccccttataacaagacagtcagccactgcctctcattgcaatcgcctcaccaagtcgccttcaacccaaggaacagagttggaccttcgatccgatctgagtcgaatccaatatctccgcggcaaccttgcaacgcagatgcatcaccactcttagtttcgagaagccgatgtcggggaaacttggcatcctctatctcccagagatcagacaaggaggaagacctctctcctctagcccaatttgtagagccgccaccaaaaggccacggcctccacctacctctcaaagagagtaacctaaagcatgttttggattatcttgagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box WD40

Protein Analysis

426

Amino Acids

47.86

Weight (kDa)

6.54

Isoelectric Point (pI)

67.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023102)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003878.1_g000002
rosa_samantha Rh4DG242100 Rh7BG102500 Rh7DG239300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 960
AasI GACNNNNNNGTC 1 cut(s) 266
AccBSI CCGCTC 1 cut(s) 252
AccII CGCG 2 cut(s) 191, 1072
AccIII TCCGGA 1 cut(s) 85
AciI CCGC 8 cut(s) 191, 247, 250, 470, 601, 1070, 1072, 1205
AclWI GGATC 3 cut(s) 630, 745, 1036
AcsI RAATTY 2 cut(s) 436, 759
AcuI CTGAAG 1 cut(s) 910
AcyI GRCGYC 1 cut(s) 261
AfiI CCNNNNNNNGG 6 cut(s) 193, 364, 469, 828, 1126, 1214
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 2 cut(s) 478, 1015
AhdI GACNNNNNGTC 1 cut(s) 632
AjnI CCWGG 1 cut(s) 827
AleI CACNNNNGTG 1 cut(s) 938
AluBI AGCT 3 cut(s) 343, 495, 597
AluI AGCT 3 cut(s) 343, 495, 597
Alw21I GWGCWC 3 cut(s) 126, 345, 559
AlwI GGATC 3 cut(s) 630, 745, 1036
AlwNI CAGNNNCTG 1 cut(s) 978
Ama87I CYCGRG 1 cut(s) 646
Aor13HI TCCGGA 1 cut(s) 85
AoxI GGCC 5 cut(s) 238, 830, 850, 1216, 1222
ApeKI GCWGC 2 cut(s) 492, 896
ApoI RAATTY 2 cut(s) 436, 759
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
AspLEI GCGC 2 cut(s) 304, 591
AspS9I GGNCC 3 cut(s) 831, 851, 1034
AsuC2I CCSGG 1 cut(s) 620
AsuHPI GGTGA 3 cut(s) 683, 992, 1089
AvaI CYCGRG 1 cut(s) 646
AvaII GGWCC 1 cut(s) 1034
BanII GRGCYC 2 cut(s) 345, 822
BbsI GAAGAC 3 cut(s) 96, 703, 1179
Bbv12I GWGCWC 3 cut(s) 126, 345, 559
BbvI GCAGC 2 cut(s) 504, 883
BccI CCATC 7 cut(s) 29, 224, 460, 478, 668, 684, 713
BceAI ACGGC 3 cut(s) 248, 253, 1237
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 1 cut(s) 829
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 620
BfaI CTAG 2 cut(s) 869, 1187
BfoI RGCGCY 2 cut(s) 305, 592
BglII AGATCT 2 cut(s) 282, 890
BisI GCNGC 6 cut(s) 247, 250, 493, 897, 1073, 1205
BlsI GCNGC 6 cut(s) 248, 251, 494, 898, 1074, 1206
Bme1390I CCNGG 2 cut(s) 620, 829
Bme18I GGWCC 1 cut(s) 1034
BmeRI GACNNNNNGTC 1 cut(s) 632
BmeT110I CYCGRG 1 cut(s) 646
BmgT120I GGNCC 3 cut(s) 831, 851, 1034
BmiI GGNNCC 4 cut(s) 324, 461, 617, 853
BmrFI CCNGG 2 cut(s) 620, 829
BmsI GCATC 4 cut(s) 282, 1081, 1103, 1148
BpiI GAAGAC 3 cut(s) 96, 703, 1179
BpmI CTGGAG 2 cut(s) 309, 613
BpuMI CCSGG 1 cut(s) 620
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 5 cut(s) 10, 827, 1019, 1070, 1219
BsaWI WCCGGW 3 cut(s) 85, 539, 559
Bsc4I CCNNNNNNNGG 6 cut(s) 193, 364, 469, 828, 1126, 1214
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 3 cut(s) 326, 673, 938
Bse3DI GCAATG 1 cut(s) 986
BseAI TCCGGA 1 cut(s) 85
BseBI CCWGG 1 cut(s) 829
BseDI CCNNGG 5 cut(s) 10, 827, 1019, 1070, 1219
BseGI GGATG 5 cut(s) 216, 273, 351, 517, 1139
BseLI CCNNNNNNNGG 6 cut(s) 193, 364, 469, 828, 1126, 1214
BseMI GCAATG 1 cut(s) 986
BseMII CTCAG 1 cut(s) 1041
BseNI ACTGG 3 cut(s) 326, 673, 938
BseRI GAGGAG 6 cut(s) 118, 212, 350, 353, 593, 1173
BseXI GCAGC 2 cut(s) 504, 883
BsgI GTGCAG 1 cut(s) 165
Bsh1236I CGCG 2 cut(s) 191, 1072
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 5 cut(s) 240, 832, 852, 1218, 1224
BsiEI CGRYCG 1 cut(s) 258
BsiHKAI GWGCWC 3 cut(s) 126, 345, 559
BsiHKCI CYCGRG 1 cut(s) 646
BsiSI CCGG 5 cut(s) 86, 299, 540, 560, 619
BslI CCNNNNNNNGG 6 cut(s) 193, 364, 469, 828, 1126, 1214
BsnI GGCC 5 cut(s) 240, 832, 852, 1218, 1224
BsoBI CYCGRG 1 cut(s) 646
Bsp1286I GDGCHC 4 cut(s) 126, 345, 559, 822
Bsp13I TCCGGA 1 cut(s) 85
Bsp19I CCATGG 1 cut(s) 10
BspACI CCGC 8 cut(s) 191, 247, 250, 470, 601, 1070, 1072, 1205
BspANI GGCC 5 cut(s) 240, 832, 852, 1218, 1224
BspCNI CTCAG 1 cut(s) 1042
BspEI TCCGGA 1 cut(s) 85
BspFNI CGCG 2 cut(s) 191, 1072
BspHI TCATGA 1 cut(s) 903
BspLI GGNNCC 4 cut(s) 324, 461, 617, 853
BspPI GGATC 3 cut(s) 630, 745, 1036
BspQI GCTCTTC 1 cut(s) 350
BsrBI CCGCTC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 986
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 3 cut(s) 326, 673, 938
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 5 cut(s) 10, 827, 1019, 1070, 1219
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 2 cut(s) 10, 1019
Bst2UI CCWGG 1 cut(s) 829
Bst4CI ACNGT 3 cut(s) 915, 948, 970
Bst6I CTCTTC 3 cut(s) 350, 724, 735
BstACI GRCGYC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 949
BstC8I GCNNGC 3 cut(s) 300, 306, 599
BstDEI CTNAG 2 cut(s) 1050, 1105
BstDSI CCRYGG 3 cut(s) 10, 1070, 1219
BstF5I GGATG 5 cut(s) 216, 273, 351, 517, 1139
BstFNI CGCG 2 cut(s) 191, 1072
BstH2I RGCGCY 2 cut(s) 305, 592
BstHHI GCGC 2 cut(s) 304, 591
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 4 cut(s) 188, 246, 580, 949
BstNI CCWGG 1 cut(s) 829
BstNSI RCATGY 2 cut(s) 412, 1262
BstSCI CCNGG 2 cut(s) 618, 827
BstUI CGCG 2 cut(s) 191, 1072
BstV1I GCAGC 2 cut(s) 504, 883
BstV2I GAAGAC 3 cut(s) 96, 703, 1179
BstX2I RGATCY 3 cut(s) 282, 750, 890
BstYI RGATCY 3 cut(s) 282, 750, 890
BsuRI GGCC 5 cut(s) 240, 832, 852, 1218, 1224
BtgI CCRYGG 3 cut(s) 10, 1070, 1219
BtsCI GGATG 5 cut(s) 216, 273, 351, 517, 1139
BtsI GCAGTG 2 cut(s) 590, 976
BtsIMutI CAGTG 4 cut(s) 333, 590, 945, 976
Cac8I GCNNGC 3 cut(s) 300, 306, 599
CaiI CAGNNNCTG 1 cut(s) 978
CciI TCATGA 1 cut(s) 903
CfoI GCGC 2 cut(s) 304, 591
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 3 cut(s) 831, 851, 1034
Cfr42I CCGCGG 1 cut(s) 1073
CseI GACGC 1 cut(s) 269
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CviAII CATG 5 cut(s) 11, 409, 862, 904, 1259
DdeI CTNAG 2 cut(s) 1050, 1105
DrdI GACNNNNNNGTC 1 cut(s) 266
DriI GACNNNNNGTC 1 cut(s) 632
DseDI GACNNNNNNGTC 1 cut(s) 266
Eam1104I CTCTTC 3 cut(s) 350, 724, 735
Eam1105I GACNNNNNGTC 1 cut(s) 632
EarI CTCTTC 3 cut(s) 350, 724, 735
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 2 cut(s) 10, 1019
Eco24I GRGCYC 2 cut(s) 345, 822
Eco47I GGWCC 1 cut(s) 1034
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 910
Eco88I CYCGRG 1 cut(s) 646
EcoICRI GAGCTC 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 851
EcoRI GAATTC 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 827
EcoT14I CCWWGG 2 cut(s) 10, 1019
EcoT22I ATGCAT 1 cut(s) 1096
EcoT38I GRGCYC 2 cut(s) 345, 822
ErhI CCWWGG 2 cut(s) 10, 1019
FaeI CATG 5 cut(s) 14, 412, 865, 907, 1262
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FatI CATG 5 cut(s) 10, 408, 861, 903, 1258
FauI CCCGC 1 cut(s) 463
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 6 cut(s) 247, 250, 493, 897, 1073, 1205
FokI GGATG 5 cut(s) 203, 260, 338, 524, 1126
FriOI GRGCYC 2 cut(s) 345, 822
Fsp4HI GCNGC 6 cut(s) 247, 250, 493, 897, 1073, 1205
FspBI CTAG 2 cut(s) 869, 1187
GlaI GCGC 2 cut(s) 303, 590
GluI GCNGC 6 cut(s) 247, 250, 493, 897, 1073, 1205
GsuI CTGGAG 2 cut(s) 309, 613
HaeII RGCGCY 2 cut(s) 305, 592
HaeIII GGCC 5 cut(s) 240, 832, 852, 1218, 1224
HapII CCGG 5 cut(s) 86, 299, 540, 560, 619
HgaI GACGC 1 cut(s) 269
HhaI GCGC 2 cut(s) 304, 591
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 5 cut(s) 14, 412, 865, 907, 1262
Hin6I GCGC 2 cut(s) 302, 589
HinP1I GCGC 2 cut(s) 302, 589
HinfI GANTC 6 cut(s) 167, 662, 782, 930, 1052, 1057
HpaII CCGG 5 cut(s) 86, 299, 540, 560, 619
HphI GGTGA 3 cut(s) 683, 992, 1089
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 8 cut(s) 174, 290, 554, 700, 929, 1046, 1051, 1162
Hpy188III TCNNGA 8 cut(s) 86, 149, 162, 637, 659, 904, 1113, 1274
Hpy8I GTNNAC 1 cut(s) 135
Hpy99I CGWCG 5 cut(s) 178, 263, 392, 395, 630
HpyAV CCTTC 5 cut(s) 472, 910, 934, 1021, 1047
HpyCH4III ACNGT 3 cut(s) 915, 948, 970
HpyCH4IV ACGT 2 cut(s) 393, 628
HpyCH4V TGCA 6 cut(s) 182, 273, 943, 991, 1083, 1094
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 246, 580, 949
HpyF3I CTNAG 2 cut(s) 1050, 1105
HpySE526I ACGT 2 cut(s) 393, 628
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 5 cut(s) 14, 412, 865, 907, 1262
HspAI GCGC 2 cut(s) 302, 589
Kpn2I TCCGGA 1 cut(s) 85
KroI GCCGGC 1 cut(s) 298
KroNI GCCGGC 1 cut(s) 300
Ksp22I TGATCA 1 cut(s) 145
KspI CCGCGG 1 cut(s) 1073
LguI GCTCTTC 1 cut(s) 350
LmnI GCTCC 5 cut(s) 328, 340, 554, 580, 594
Lsp1109I GCAGC 2 cut(s) 504, 883
LweI GCATC 4 cut(s) 282, 1081, 1103, 1148
MaeI CTAG 2 cut(s) 869, 1187
MaeII ACGT 2 cut(s) 393, 628
MaeIII GTNAC 3 cut(s) 109, 931, 1247
MbiI CCGCTC 1 cut(s) 252
MflI RGATCY 3 cut(s) 282, 750, 890
MhlI GDGCHC 4 cut(s) 126, 345, 559, 822
MluCI AATT 5 cut(s) 317, 436, 517, 759, 1193
MlyI GAGTC 2 cut(s) 939, 1061
MmeI TCCRAC 3 cut(s) 197, 678, 1012
Mph1103I ATGCAT 1 cut(s) 1096
MroI TCCGGA 1 cut(s) 85
MroNI GCCGGC 1 cut(s) 298
MslI CAYNNNNRTG 2 cut(s) 413, 938
MspA1I CMGCKG 1 cut(s) 1072
MspI CCGG 5 cut(s) 86, 299, 540, 560, 619
MspR9I CCNGG 2 cut(s) 620, 829
MvaI CCWGG 1 cut(s) 829
MvnI CGCG 2 cut(s) 191, 1072
MwoI GCNNNNNNNGC 4 cut(s) 188, 246, 580, 949
NaeI GCCGGC 1 cut(s) 300
NciI CCSGG 1 cut(s) 620
NcoI CCATGG 1 cut(s) 10
NgoMIV GCCGGC 1 cut(s) 298
NlaIII CATG 5 cut(s) 14, 412, 865, 907, 1262
NlaIV GGNNCC 4 cut(s) 324, 461, 617, 853
NmuCI GTSAC 2 cut(s) 109, 931
NsiI ATGCAT 1 cut(s) 1096
NspI RCATGY 2 cut(s) 412, 1262
OliI CACNNNNGTG 1 cut(s) 938
PagI TCATGA 1 cut(s) 903
PciI ACATGT 1 cut(s) 408
PciSI GCTCTTC 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PdiI GCCGGC 1 cut(s) 300
PfeI GAWTC 4 cut(s) 167, 662, 782, 1057
PkrI GCNGC 6 cut(s) 248, 251, 494, 898, 1074, 1206
Ple19I CGATCG 1 cut(s) 258
PleI GAGTC 2 cut(s) 938, 1060
PpsI GAGTC 2 cut(s) 938, 1060
PscI ACATGT 1 cut(s) 408
PsiI TTATAA 1 cut(s) 960
Psp124BI GAGCTC 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 827
PspGI CCWGG 1 cut(s) 827
PspN4I GGNNCC 4 cut(s) 324, 461, 617, 853
PspPI GGNCC 3 cut(s) 831, 851, 1034
PstNI CAGNNNCTG 1 cut(s) 978
PsuI RGATCY 3 cut(s) 282, 750, 890
PvuI CGATCG 1 cut(s) 258
RseI CAYNNNNRTG 2 cut(s) 413, 938
SacI GAGCTC 1 cut(s) 345
SacII CCGCGG 1 cut(s) 1073
SapI GCTCTTC 1 cut(s) 350
SatI GCNGC 6 cut(s) 247, 250, 493, 897, 1073, 1205
Sau96I GGNCC 3 cut(s) 831, 851, 1034
SchI GAGTC 2 cut(s) 939, 1061
ScrFI CCNGG 2 cut(s) 620, 829
SduI GDGCHC 4 cut(s) 126, 345, 559, 822
SfaNI GCATC 4 cut(s) 282, 1081, 1103, 1148
Sfr303I CCGCGG 1 cut(s) 1073
SgrBI CCGCGG 1 cut(s) 1073
SinI GGWCC 1 cut(s) 1034
SmiMI CAYNNNNRTG 2 cut(s) 413, 938
SmlI CTYRAG 1 cut(s) 1274
SmoI CTYRAG 1 cut(s) 1274
Sse9I AATT 5 cut(s) 317, 436, 517, 759, 1193
SsiI CCGC 8 cut(s) 191, 247, 250, 470, 601, 1070, 1072, 1205
SspMI CTAG 2 cut(s) 869, 1187
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 2 cut(s) 618, 827
StyI CCWWGG 2 cut(s) 10, 1019
TaaI ACNGT 3 cut(s) 915, 948, 970
TaiI ACGT 2 cut(s) 396, 631
TasI AATT 5 cut(s) 317, 436, 517, 759, 1193
TauI GCSGC 4 cut(s) 249, 252, 1075, 1207
TfiI GAWTC 4 cut(s) 167, 662, 782, 1057
TscAI CASTG 4 cut(s) 333, 590, 945, 983
TseFI GTSAC 2 cut(s) 109, 931
TseI GCWGC 2 cut(s) 492, 896
Tsp45I GTSAC 2 cut(s) 109, 931
TspDTI ATGAA 4 cut(s) 396, 584, 878, 892
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 4 cut(s) 333, 590, 945, 983
VpaK11BI GGWCC 1 cut(s) 1034
XapI RAATTY 2 cut(s) 436, 759
XceI RCATGY 2 cut(s) 412, 1262
XspI CTAG 2 cut(s) 869, 1187
Zsp2I ATGCAT 1 cut(s) 1096
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.