Rh7BG102500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0023102
Physical Location & Seq
Forward (+)
7642202 .. 7642525
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG102500.1

Sequence Viewer

Length: 324 bp
ATGAACCTAGAGAAAACCCTACGCCACAGATCTGCCTCCTTCACGACACCACCTGCACCACTGTTGGCAACCGTCAGCCCCACACCAGTGCAGCAGTTGCCGCCTTGGAACAAGACAGTCAGCCACCGCCTCTCATTGCAATCGCCGCACCAAGTCGCCTTCAACCCAAGAAACAGAGTTGGACCTGTAAGCCCGACACCGCAGTCCTCAAGGTTTCCGTCCCCCATCAGCACCCAGCCGCTAGACCGAGGTCGAGAACCCAAAGTCGGCCACAGCCCGACACTTCGCTCACCGGATCCCTGTTGCACTCCTGTCCAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.73

Weight (kDa)

11.48

Isoelectric Point (pI)

89.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023102)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003878.1_g000002
rosa_samantha Rh4DG242100 Rh7BG102500 Rh7DG239300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 61
AasI GACNNNNNNGTC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 61
AciI CCGC 5 cut(s) 101, 127, 146, 200, 239
AclWI GGATC 2 cut(s) 290, 303
AcoI YGGCCR 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 1 cut(s) 163
AleI CACNNNNGTG 1 cut(s) 86
AlwI GGATC 2 cut(s) 290, 303
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 282
AvaII GGWCC 1 cut(s) 182
BamHI GGATCC 1 cut(s) 295
BbvI GCAGC 1 cut(s) 103
BccI CCATC 1 cut(s) 233
BfaI CTAG 2 cut(s) 8, 242
BfuAI ACCTGC 1 cut(s) 61
BglII AGATCT 1 cut(s) 29
BisI GCNGC 4 cut(s) 92, 101, 146, 239
BlsI GCNGC 4 cut(s) 93, 102, 147, 240
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 297
BoxI GACNNNNGTC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 193
BsaJI CCNNGG 2 cut(s) 104, 247
BsaWI WCCGGW 1 cut(s) 292
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 104, 247
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMI GCAATG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 234
BsgI GTGCAG 2 cut(s) 39, 110
BshFI GGCC 1 cut(s) 270
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 1 cut(s) 270
Bsp143I GATC 2 cut(s) 29, 295
BspACI CCGC 5 cut(s) 101, 127, 146, 200, 239
BspANI GGCC 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 297
BspMI ACCTGC 1 cut(s) 61
BspPI GGATC 2 cut(s) 290, 303
BsrDI GCAATG 1 cut(s) 134
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 104, 247
BssMI GATC 2 cut(s) 29, 295
BssT1I CCWWGG 1 cut(s) 104
Bst4CI ACNGT 3 cut(s) 63, 73, 118
BstAPI GCANNNNNTGC 1 cut(s) 97
BstKTI GATC 2 cut(s) 32, 298
BstMBI GATC 2 cut(s) 29, 295
BstMWI GCNNNNNNNGC 3 cut(s) 97, 100, 145
BstPAI GACNNNNGTC 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 103
BstX2I RGATCY 2 cut(s) 29, 295
BstYI RGATCY 2 cut(s) 29, 295
BsuRI GGCC 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 59, 93
BveI ACCTGC 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 182
CviJI RGCY 7 cut(s) 78, 123, 192, 238, 270, 276, 319
CviKI_1 RGCY 7 cut(s) 78, 123, 192, 238, 270, 276, 319
DpnI GATC 2 cut(s) 31, 297
DpnII GATC 2 cut(s) 29, 295
DrdI GACNNNNNNGTC 1 cut(s) 202
DseDI GACNNNNNNGTC 1 cut(s) 202
EaeI YGGCCR 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 104
FaiI YATR 1 cut(s) 322
FaqI GGGAC 1 cut(s) 205
Fnu4HI GCNGC 4 cut(s) 92, 101, 146, 239
Fsp4HI GCNGC 4 cut(s) 92, 101, 146, 239
FspBI CTAG 2 cut(s) 8, 242
GluI GCNGC 4 cut(s) 92, 101, 146, 239
GsaI CCCAGC 1 cut(s) 238
HaeIII GGCC 1 cut(s) 270
HapII CCGG 1 cut(s) 293
HpaII CCGG 1 cut(s) 293
HphI GGTGA 1 cut(s) 282
Hpy188III TCNNGA 2 cut(s) 43, 254
HpyAV CCTTC 2 cut(s) 49, 169
HpyCH4III ACNGT 3 cut(s) 63, 73, 118
HpyCH4V TGCA 4 cut(s) 56, 91, 139, 306
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 100, 145
Kzo9I GATC 2 cut(s) 29, 295
LpnPI CCDG 6 cut(s) 66, 99, 198, 248, 306, 313
Lsp1109I GCAGC 1 cut(s) 103
MaeI CTAG 2 cut(s) 8, 242
MalI GATC 2 cut(s) 31, 297
MboI GATC 2 cut(s) 29, 295
MflI RGATCY 2 cut(s) 29, 295
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 4 cut(s) 46, 140, 217, 242
MslI CAYNNNNRTG 1 cut(s) 86
MspI CCGG 1 cut(s) 293
MwoI GCNNNNNNNGC 3 cut(s) 97, 100, 145
NdeII GATC 2 cut(s) 29, 295
NlaIV GGNNCC 1 cut(s) 297
OliI CACNNNNGTG 1 cut(s) 86
PaqCI CACCTGC 1 cut(s) 61
PkrI GCNGC 4 cut(s) 93, 102, 147, 240
PshAI GACNNNNGTC 1 cut(s) 249
PspFI CCCAGC 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 297
PspPI GGNCC 1 cut(s) 182
PsuI RGATCY 2 cut(s) 29, 295
RseI CAYNNNNRTG 1 cut(s) 86
SatI GCNGC 4 cut(s) 92, 101, 146, 239
Sau3AI GATC 2 cut(s) 29, 295
Sau96I GGNCC 1 cut(s) 182
SetI ASST 5 cut(s) 9, 55, 187, 215, 253
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
SsiI CCGC 5 cut(s) 101, 127, 146, 200, 239
SspMI CTAG 2 cut(s) 8, 242
StyI CCWWGG 1 cut(s) 104
TaaI ACNGT 3 cut(s) 63, 73, 118
TaqI TCGA 1 cut(s) 253
TaqII GACCGA 1 cut(s) 261
TauI GCSGC 3 cut(s) 103, 148, 241
TscAI CASTG 2 cut(s) 66, 93
TseI GCWGC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 207
TspRI CASTG 2 cut(s) 66, 93
VpaK11BI GGWCC 1 cut(s) 182
XspI CTAG 2 cut(s) 8, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.