Rh4DG242100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0023102
Physical Location & Seq
Forward (+)
45223287 .. 45223610
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG242100.1

Sequence Viewer

Length: 324 bp
ATGAACCTAGAGAAAACCGTACTCCACAGATCTGCCGCCTTCACGACACCACCTGCACCACCGTTGGCAACCTTCAGCCCCACACCAGTGCAACAGTTGCCGCCTTGGAACAAGACAGTCAGCCACCGCCTCTCATTGCAATCGCCCCACCAAGTCGCCTTCAACCCAAGGAACAGAGTTGGACCTATAAGCCTGACACTGCAGTCCTCACGGTTTCCTTCCCCCATCAGCACCCAGCCTCTAGACCGAGATCGAGAACCCAAAGCCGGCCACAGCCCAACACTTCACTCACCGAATCCTTGTTGCACTCCTATCCAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.76

Weight (kDa)

10.81

Isoelectric Point (pI)

78.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023102)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003878.1_g000002
rosa_samantha Rh4DG242100 Rh7BG102500 Rh7DG239300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 61
AasI GACNNNNNNGTC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 61
AciI CCGC 3 cut(s) 36, 101, 127
AcoI YGGCCR 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 58
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 1 cut(s) 163
AleI CACNNNNGTG 1 cut(s) 86
AoxI GGCC 1 cut(s) 268
AspS9I GGNCC 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 282
AvaII GGWCC 1 cut(s) 182
BccI CCATC 1 cut(s) 233
BfaI CTAG 2 cut(s) 8, 242
BfmI CTRYAG 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 61
BglII AGATCT 1 cut(s) 29
BisI GCNGC 2 cut(s) 36, 101
BlsI GCNGC 2 cut(s) 37, 102
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 104, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 104, 167
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMI GCAATG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 234
BsgI GTGCAG 1 cut(s) 39
BshFI GGCC 1 cut(s) 270
BsiSI CCGG 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 266
BsnI GGCC 1 cut(s) 270
Bsp143I GATC 2 cut(s) 29, 250
BspACI CCGC 3 cut(s) 36, 101, 127
BspANI GGCC 1 cut(s) 270
BspMAI CTGCAG 1 cut(s) 204
BspMI ACCTGC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 2 cut(s) 104, 167
BssMI GATC 2 cut(s) 29, 250
BssT1I CCWWGG 2 cut(s) 104, 167
Bst4CI ACNGT 5 cut(s) 19, 63, 96, 118, 213
BstAPI GCANNNNNTGC 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 268
BstKTI GATC 2 cut(s) 32, 253
BstMBI GATC 2 cut(s) 29, 250
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstSFI CTRYAG 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BsuRI GGCC 1 cut(s) 270
BtsI GCAGTG 1 cut(s) 197
BtsIMutI CAGTG 2 cut(s) 93, 197
BveI ACCTGC 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 20
CviJI RGCY 8 cut(s) 78, 123, 192, 238, 266, 270, 276, 319
CviKI_1 RGCY 8 cut(s) 78, 123, 192, 238, 266, 270, 276, 319
CviQI GTAC 1 cut(s) 20
DpnI GATC 2 cut(s) 31, 252
DpnII GATC 2 cut(s) 29, 250
DrdI GACNNNNNNGTC 1 cut(s) 202
DseDI GACNNNNNNGTC 1 cut(s) 202
EaeI YGGCCR 1 cut(s) 268
Eco130I CCWWGG 2 cut(s) 104, 167
Eco47I GGWCC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 58
EcoT14I CCWWGG 2 cut(s) 104, 167
ErhI CCWWGG 2 cut(s) 104, 167
FaiI YATR 2 cut(s) 188, 322
Fnu4HI GCNGC 2 cut(s) 36, 101
Fsp4HI GCNGC 2 cut(s) 36, 101
FspBI CTAG 2 cut(s) 8, 242
GluI GCNGC 2 cut(s) 36, 101
GsaI CCCAGC 1 cut(s) 238
HaeIII GGCC 1 cut(s) 270
HapII CCGG 1 cut(s) 267
HinfI GANTC 1 cut(s) 295
HpaII CCGG 1 cut(s) 267
HphI GGTGA 1 cut(s) 282
Hpy188III TCNNGA 3 cut(s) 43, 242, 254
HpyAV CCTTC 4 cut(s) 49, 82, 169, 228
HpyCH4III ACNGT 5 cut(s) 19, 63, 96, 118, 213
HpyCH4V TGCA 5 cut(s) 56, 91, 139, 202, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
KroI GCCGGC 1 cut(s) 266
KroNI GCCGGC 1 cut(s) 268
Kzo9I GATC 2 cut(s) 29, 250
LpnPI CCDG 5 cut(s) 66, 99, 206, 248, 280
MaeI CTAG 2 cut(s) 8, 242
MalI GATC 2 cut(s) 31, 252
MboI GATC 2 cut(s) 29, 250
MflI RGATCY 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 3 cut(s) 140, 217, 249
MroNI GCCGGC 1 cut(s) 266
MslI CAYNNNNRTG 1 cut(s) 86
MspI CCGG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 97
NaeI GCCGGC 1 cut(s) 268
NdeII GATC 2 cut(s) 29, 250
NgoMIV GCCGGC 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 86
PaqCI CACCTGC 1 cut(s) 61
PdiI GCCGGC 1 cut(s) 268
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 2 cut(s) 37, 102
PspFI CCCAGC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 182
PstI CTGCAG 1 cut(s) 204
PsuI RGATCY 1 cut(s) 29
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 86
SatI GCNGC 2 cut(s) 36, 101
Sau3AI GATC 2 cut(s) 29, 250
Sau96I GGNCC 1 cut(s) 182
SetI ASST 4 cut(s) 9, 55, 74, 187
SfcI CTRYAG 1 cut(s) 200
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 86
SsiI CCGC 3 cut(s) 36, 101, 127
SspMI CTAG 2 cut(s) 8, 242
StyI CCWWGG 2 cut(s) 104, 167
TaaI ACNGT 5 cut(s) 19, 63, 96, 118, 213
TaqI TCGA 1 cut(s) 253
TaqII GACCGA 1 cut(s) 261
TauI GCSGC 2 cut(s) 38, 103
TfiI GAWTC 1 cut(s) 295
TscAI CASTG 2 cut(s) 93, 204
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 93, 204
VpaK11BI GGWCC 1 cut(s) 182
XbaI TCTAGA 1 cut(s) 241
XspI CTAG 2 cut(s) 8, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.