Rmu_sc0003878.1_g000002

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003878.1
OG0023102
Physical Location & Seq
Forward (+)
16762 .. 22624
5863 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1281 bp
atggattaccatgggcaaaacgagtatttgttagatggaataatcataaccaaagcccttacctgtaaggcaagaagtccttttccggaagacagagaaaagaaccttgtgacgaggttggtgctctcctcgtccacatcgtttgatcaagaagtcaggtcaagagattctccgacgactgcaccccacgcggaggcaatccaatcactctctgccatcctcctctccctcatctacggcctctgccgccgctcgatcgacgccgttgtctgcatccccaagatcttccgatttgagccggcgctcgcccagacggaattggctccagtgctattcgaggagctcttcctcatccacctcctcttggttctccaatgctatgaaaacgacgacgtttcgatcaacgacatgtcggtggcttttgaggtggggtcgaattcgctgtcgaagatgagtgggaaccagatggcgggattgaaggagatggagagcagctacgagagggttttggatgagaattgtagggaagtgatgagttccggtatgatgatcggagcaccggagaagatgaagcgtgaggagcagtggcgctggagcttgcggtgtgcgtgtgggaaccgggatcgacgtatggtcgtgattggctcgggtttcagtctggattcgactggtgatggtggtgttgtgagatggtggtcggaagtggtggtcttcgatgatggcagaggaagagaagaagaagagagagagatcctacaaattccacccacaaaacaggaggaatccctaaagaataaaccaaaaacagaaaacccagagcccagacccaggcccaagcccaaactcgtaggcccccaacccatgaacctagagaaaaccctacgccacagatctgctgccttcatgacaccaccgttggcaaccttcagagtcacaccagtgcaacagttgcccccttataacaagacagtcagccactgcctctcattgcaatcgcctcaccaagtcgccttcaacccaaggaacagagttggaccttcgatccgatctgagtcgaatccaatatctccgcggcaaccttgcaacgcagatgcatcaccactcttagtttcgagaagccgatgtcggggaaacttggcatcctctatctcccagagatcagacaaggaggaagacctctctcctctagcccaatttgtagagccgccaccaaaaggccacggcctccacctacctctcaaagagagtaacctaaagcatgttttggattatcttgagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box WD40

Protein Analysis

426

Amino Acids

47.86

Weight (kDa)

6.54

Isoelectric Point (pI)

67.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_LIN PF23568 42 - 175 6.1e-09 E3 ubiquitin-protein ligase LIN-like, ARM repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023102)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003878.1_g000002
rosa_samantha Rh4DG242100 Rh7BG102500 Rh7DG239300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 960
AasI GACNNNNNNGTC 1 cut(s) 266
AccBSI CCGCTC 1 cut(s) 252
AccII CGCG 2 cut(s) 191, 1072
AccIII TCCGGA 1 cut(s) 85
AciI CCGC 8 cut(s) 191, 247, 250, 470, 601, 1070, 1072, 1205
AclWI GGATC 3 cut(s) 630, 745, 1036
AcsI RAATTY 2 cut(s) 436, 759
AcuI CTGAAG 1 cut(s) 910
AcyI GRCGYC 1 cut(s) 261
AfiI CCNNNNNNNGG 6 cut(s) 193, 364, 469, 828, 1126, 1214
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 2 cut(s) 478, 1015
AhdI GACNNNNNGTC 1 cut(s) 632
AjnI CCWGG 1 cut(s) 827
AleI CACNNNNGTG 1 cut(s) 938
AluBI AGCT 3 cut(s) 343, 495, 597
AluI AGCT 3 cut(s) 343, 495, 597
Alw21I GWGCWC 3 cut(s) 126, 345, 559
AlwI GGATC 3 cut(s) 630, 745, 1036
AlwNI CAGNNNCTG 1 cut(s) 978
Ama87I CYCGRG 1 cut(s) 646
Aor13HI TCCGGA 1 cut(s) 85
AoxI GGCC 5 cut(s) 238, 830, 850, 1216, 1222
ApeKI GCWGC 2 cut(s) 492, 896
ApoI RAATTY 2 cut(s) 436, 759
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
AspLEI GCGC 2 cut(s) 304, 591
AspS9I GGNCC 3 cut(s) 831, 851, 1034
AsuC2I CCSGG 1 cut(s) 620
AsuHPI GGTGA 3 cut(s) 683, 992, 1089
AvaI CYCGRG 1 cut(s) 646
AvaII GGWCC 1 cut(s) 1034
BanII GRGCYC 2 cut(s) 345, 822
BbsI GAAGAC 3 cut(s) 96, 703, 1179
Bbv12I GWGCWC 3 cut(s) 126, 345, 559
BbvI GCAGC 2 cut(s) 504, 883
BccI CCATC 7 cut(s) 29, 224, 460, 478, 668, 684, 713
BceAI ACGGC 3 cut(s) 248, 253, 1237
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 1 cut(s) 829
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 620
BfaI CTAG 2 cut(s) 869, 1187
BfoI RGCGCY 2 cut(s) 305, 592
BglII AGATCT 2 cut(s) 282, 890
BisI GCNGC 6 cut(s) 247, 250, 493, 897, 1073, 1205
BlsI GCNGC 6 cut(s) 248, 251, 494, 898, 1074, 1206
Bme1390I CCNGG 2 cut(s) 620, 829
Bme18I GGWCC 1 cut(s) 1034
BmeRI GACNNNNNGTC 1 cut(s) 632
BmeT110I CYCGRG 1 cut(s) 646
BmgT120I GGNCC 3 cut(s) 831, 851, 1034
BmiI GGNNCC 4 cut(s) 324, 461, 617, 853
BmrFI CCNGG 2 cut(s) 620, 829
BmsI GCATC 4 cut(s) 282, 1081, 1103, 1148
BpiI GAAGAC 3 cut(s) 96, 703, 1179
BpmI CTGGAG 2 cut(s) 309, 613
BpuMI CCSGG 1 cut(s) 620
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 5 cut(s) 10, 827, 1019, 1070, 1219
BsaWI WCCGGW 3 cut(s) 85, 539, 559
Bsc4I CCNNNNNNNGG 6 cut(s) 193, 364, 469, 828, 1126, 1214
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 3 cut(s) 326, 673, 938
Bse3DI GCAATG 1 cut(s) 986
BseAI TCCGGA 1 cut(s) 85
BseBI CCWGG 1 cut(s) 829
BseDI CCNNGG 5 cut(s) 10, 827, 1019, 1070, 1219
BseGI GGATG 5 cut(s) 216, 273, 351, 517, 1139
BseLI CCNNNNNNNGG 6 cut(s) 193, 364, 469, 828, 1126, 1214
BseMI GCAATG 1 cut(s) 986
BseMII CTCAG 1 cut(s) 1041
BseNI ACTGG 3 cut(s) 326, 673, 938
BseRI GAGGAG 6 cut(s) 118, 212, 350, 353, 593, 1173
BseXI GCAGC 2 cut(s) 504, 883
BsgI GTGCAG 1 cut(s) 165
Bsh1236I CGCG 2 cut(s) 191, 1072
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 5 cut(s) 240, 832, 852, 1218, 1224
BsiEI CGRYCG 1 cut(s) 258
BsiHKAI GWGCWC 3 cut(s) 126, 345, 559
BsiHKCI CYCGRG 1 cut(s) 646
BsiSI CCGG 5 cut(s) 86, 299, 540, 560, 619
BslI CCNNNNNNNGG 6 cut(s) 193, 364, 469, 828, 1126, 1214
BsnI GGCC 5 cut(s) 240, 832, 852, 1218, 1224
BsoBI CYCGRG 1 cut(s) 646
Bsp1286I GDGCHC 4 cut(s) 126, 345, 559, 822
Bsp13I TCCGGA 1 cut(s) 85
Bsp19I CCATGG 1 cut(s) 10
BspACI CCGC 8 cut(s) 191, 247, 250, 470, 601, 1070, 1072, 1205
BspANI GGCC 5 cut(s) 240, 832, 852, 1218, 1224
BspCNI CTCAG 1 cut(s) 1042
BspEI TCCGGA 1 cut(s) 85
BspFNI CGCG 2 cut(s) 191, 1072
BspHI TCATGA 1 cut(s) 903
BspLI GGNNCC 4 cut(s) 324, 461, 617, 853
BspPI GGATC 3 cut(s) 630, 745, 1036
BspQI GCTCTTC 1 cut(s) 350
BsrBI CCGCTC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 986
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 3 cut(s) 326, 673, 938
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 5 cut(s) 10, 827, 1019, 1070, 1219
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 2 cut(s) 10, 1019
Bst2UI CCWGG 1 cut(s) 829
Bst4CI ACNGT 3 cut(s) 915, 948, 970
Bst6I CTCTTC 3 cut(s) 350, 724, 735
BstACI GRCGYC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 949
BstC8I GCNNGC 3 cut(s) 300, 306, 599
BstDEI CTNAG 2 cut(s) 1050, 1105
BstDSI CCRYGG 3 cut(s) 10, 1070, 1219
BstF5I GGATG 5 cut(s) 216, 273, 351, 517, 1139
BstFNI CGCG 2 cut(s) 191, 1072
BstH2I RGCGCY 2 cut(s) 305, 592
BstHHI GCGC 2 cut(s) 304, 591
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 4 cut(s) 188, 246, 580, 949
BstNI CCWGG 1 cut(s) 829
BstNSI RCATGY 2 cut(s) 412, 1262
BstSCI CCNGG 2 cut(s) 618, 827
BstUI CGCG 2 cut(s) 191, 1072
BstV1I GCAGC 2 cut(s) 504, 883
BstV2I GAAGAC 3 cut(s) 96, 703, 1179
BstX2I RGATCY 3 cut(s) 282, 750, 890
BstYI RGATCY 3 cut(s) 282, 750, 890
BsuRI GGCC 5 cut(s) 240, 832, 852, 1218, 1224
BtgI CCRYGG 3 cut(s) 10, 1070, 1219
BtsCI GGATG 5 cut(s) 216, 273, 351, 517, 1139
BtsI GCAGTG 2 cut(s) 590, 976
BtsIMutI CAGTG 4 cut(s) 333, 590, 945, 976
Cac8I GCNNGC 3 cut(s) 300, 306, 599
CaiI CAGNNNCTG 1 cut(s) 978
CciI TCATGA 1 cut(s) 903
CfoI GCGC 2 cut(s) 304, 591
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 3 cut(s) 831, 851, 1034
Cfr42I CCGCGG 1 cut(s) 1073
CseI GACGC 1 cut(s) 269
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CviAII CATG 5 cut(s) 11, 409, 862, 904, 1259
DdeI CTNAG 2 cut(s) 1050, 1105
DrdI GACNNNNNNGTC 1 cut(s) 266
DriI GACNNNNNGTC 1 cut(s) 632
DseDI GACNNNNNNGTC 1 cut(s) 266
Eam1104I CTCTTC 3 cut(s) 350, 724, 735
Eam1105I GACNNNNNGTC 1 cut(s) 632
EarI CTCTTC 3 cut(s) 350, 724, 735
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 2 cut(s) 10, 1019
Eco24I GRGCYC 2 cut(s) 345, 822
Eco47I GGWCC 1 cut(s) 1034
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 910
Eco88I CYCGRG 1 cut(s) 646
EcoICRI GAGCTC 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 851
EcoRI GAATTC 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 827
EcoT14I CCWWGG 2 cut(s) 10, 1019
EcoT22I ATGCAT 1 cut(s) 1096
EcoT38I GRGCYC 2 cut(s) 345, 822
ErhI CCWWGG 2 cut(s) 10, 1019
FaeI CATG 5 cut(s) 14, 412, 865, 907, 1262
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FatI CATG 5 cut(s) 10, 408, 861, 903, 1258
FauI CCCGC 1 cut(s) 463
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 6 cut(s) 247, 250, 493, 897, 1073, 1205
FokI GGATG 5 cut(s) 203, 260, 338, 524, 1126
FriOI GRGCYC 2 cut(s) 345, 822
Fsp4HI GCNGC 6 cut(s) 247, 250, 493, 897, 1073, 1205
FspBI CTAG 2 cut(s) 869, 1187
GlaI GCGC 2 cut(s) 303, 590
GluI GCNGC 6 cut(s) 247, 250, 493, 897, 1073, 1205
GsuI CTGGAG 2 cut(s) 309, 613
HaeII RGCGCY 2 cut(s) 305, 592
HaeIII GGCC 5 cut(s) 240, 832, 852, 1218, 1224
HapII CCGG 5 cut(s) 86, 299, 540, 560, 619
HgaI GACGC 1 cut(s) 269
HhaI GCGC 2 cut(s) 304, 591
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 5 cut(s) 14, 412, 865, 907, 1262
Hin6I GCGC 2 cut(s) 302, 589
HinP1I GCGC 2 cut(s) 302, 589
HinfI GANTC 6 cut(s) 167, 662, 782, 930, 1052, 1057
HpaII CCGG 5 cut(s) 86, 299, 540, 560, 619
HphI GGTGA 3 cut(s) 683, 992, 1089
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 8 cut(s) 174, 290, 554, 700, 929, 1046, 1051, 1162
Hpy188III TCNNGA 8 cut(s) 86, 149, 162, 637, 659, 904, 1113, 1274
Hpy8I GTNNAC 1 cut(s) 135
Hpy99I CGWCG 5 cut(s) 178, 263, 392, 395, 630
HpyAV CCTTC 5 cut(s) 472, 910, 934, 1021, 1047
HpyCH4III ACNGT 3 cut(s) 915, 948, 970
HpyCH4IV ACGT 2 cut(s) 393, 628
HpyCH4V TGCA 6 cut(s) 182, 273, 943, 991, 1083, 1094
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 246, 580, 949
HpyF3I CTNAG 2 cut(s) 1050, 1105
HpySE526I ACGT 2 cut(s) 393, 628
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 5 cut(s) 14, 412, 865, 907, 1262
HspAI GCGC 2 cut(s) 302, 589
Kpn2I TCCGGA 1 cut(s) 85
KroI GCCGGC 1 cut(s) 298
KroNI GCCGGC 1 cut(s) 300
Ksp22I TGATCA 1 cut(s) 145
KspI CCGCGG 1 cut(s) 1073
LguI GCTCTTC 1 cut(s) 350
LmnI GCTCC 5 cut(s) 328, 340, 554, 580, 594
Lsp1109I GCAGC 2 cut(s) 504, 883
LweI GCATC 4 cut(s) 282, 1081, 1103, 1148
MaeI CTAG 2 cut(s) 869, 1187
MaeII ACGT 2 cut(s) 393, 628
MaeIII GTNAC 3 cut(s) 109, 931, 1247
MbiI CCGCTC 1 cut(s) 252
MflI RGATCY 3 cut(s) 282, 750, 890
MhlI GDGCHC 4 cut(s) 126, 345, 559, 822
MluCI AATT 5 cut(s) 317, 436, 517, 759, 1193
MlyI GAGTC 2 cut(s) 939, 1061
MmeI TCCRAC 3 cut(s) 197, 678, 1012
Mph1103I ATGCAT 1 cut(s) 1096
MroI TCCGGA 1 cut(s) 85
MroNI GCCGGC 1 cut(s) 298
MslI CAYNNNNRTG 2 cut(s) 413, 938
MspA1I CMGCKG 1 cut(s) 1072
MspI CCGG 5 cut(s) 86, 299, 540, 560, 619
MspR9I CCNGG 2 cut(s) 620, 829
MvaI CCWGG 1 cut(s) 829
MvnI CGCG 2 cut(s) 191, 1072
MwoI GCNNNNNNNGC 4 cut(s) 188, 246, 580, 949
NaeI GCCGGC 1 cut(s) 300
NciI CCSGG 1 cut(s) 620
NcoI CCATGG 1 cut(s) 10
NgoMIV GCCGGC 1 cut(s) 298
NlaIII CATG 5 cut(s) 14, 412, 865, 907, 1262
NlaIV GGNNCC 4 cut(s) 324, 461, 617, 853
NmuCI GTSAC 2 cut(s) 109, 931
NsiI ATGCAT 1 cut(s) 1096
NspI RCATGY 2 cut(s) 412, 1262
OliI CACNNNNGTG 1 cut(s) 938
PagI TCATGA 1 cut(s) 903
PciI ACATGT 1 cut(s) 408
PciSI GCTCTTC 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PdiI GCCGGC 1 cut(s) 300
PfeI GAWTC 4 cut(s) 167, 662, 782, 1057
PkrI GCNGC 6 cut(s) 248, 251, 494, 898, 1074, 1206
Ple19I CGATCG 1 cut(s) 258
PleI GAGTC 2 cut(s) 938, 1060
PpsI GAGTC 2 cut(s) 938, 1060
PscI ACATGT 1 cut(s) 408
PsiI TTATAA 1 cut(s) 960
Psp124BI GAGCTC 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 827
PspGI CCWGG 1 cut(s) 827
PspN4I GGNNCC 4 cut(s) 324, 461, 617, 853
PspPI GGNCC 3 cut(s) 831, 851, 1034
PstNI CAGNNNCTG 1 cut(s) 978
PsuI RGATCY 3 cut(s) 282, 750, 890
PvuI CGATCG 1 cut(s) 258
RseI CAYNNNNRTG 2 cut(s) 413, 938
SacI GAGCTC 1 cut(s) 345
SacII CCGCGG 1 cut(s) 1073
SapI GCTCTTC 1 cut(s) 350
SatI GCNGC 6 cut(s) 247, 250, 493, 897, 1073, 1205
Sau96I GGNCC 3 cut(s) 831, 851, 1034
SchI GAGTC 2 cut(s) 939, 1061
ScrFI CCNGG 2 cut(s) 620, 829
SduI GDGCHC 4 cut(s) 126, 345, 559, 822
SfaNI GCATC 4 cut(s) 282, 1081, 1103, 1148
Sfr303I CCGCGG 1 cut(s) 1073
SgrBI CCGCGG 1 cut(s) 1073
SinI GGWCC 1 cut(s) 1034
SmiMI CAYNNNNRTG 2 cut(s) 413, 938
SmlI CTYRAG 1 cut(s) 1274
SmoI CTYRAG 1 cut(s) 1274
Sse9I AATT 5 cut(s) 317, 436, 517, 759, 1193
SsiI CCGC 8 cut(s) 191, 247, 250, 470, 601, 1070, 1072, 1205
SspMI CTAG 2 cut(s) 869, 1187
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 2 cut(s) 618, 827
StyI CCWWGG 2 cut(s) 10, 1019
TaaI ACNGT 3 cut(s) 915, 948, 970
TaiI ACGT 2 cut(s) 396, 631
TasI AATT 5 cut(s) 317, 436, 517, 759, 1193
TauI GCSGC 4 cut(s) 249, 252, 1075, 1207
TfiI GAWTC 4 cut(s) 167, 662, 782, 1057
TscAI CASTG 4 cut(s) 333, 590, 945, 983
TseFI GTSAC 2 cut(s) 109, 931
TseI GCWGC 2 cut(s) 492, 896
Tsp45I GTSAC 2 cut(s) 109, 931
TspDTI ATGAA 4 cut(s) 396, 584, 878, 892
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 4 cut(s) 333, 590, 945, 983
VpaK11BI GGWCC 1 cut(s) 1034
XapI RAATTY 2 cut(s) 436, 759
XceI RCATGY 2 cut(s) 412, 1262
XspI CTAG 2 cut(s) 869, 1187
Zsp2I ATGCAT 1 cut(s) 1096
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.