Rmu_sc0003880.1_g000044

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003880.1
OG0021663
Physical Location & Seq
Reverse (-)
209748 .. 212585
2838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003880.1_g000044.1.cds

Sequence Viewer

Length: 567 bp
atgaatgaagagagaagggaggttccagaaatcatgagatacgccatacccattgaagttgggggccttcagaggaggatagtggggactagagatatgatagagagaatgaagaggatgaaattcaagaatgccgagaggagatttgggaaggaacaagagctcctaagattggatttcaaaggaagacattttctaggtttcgagtttgaattgcttcagaatttgaaatgcgtttttggtttgaaatttaaagttttgaaggagaagggaaaggttgtggaggagacaaagggggttgtgctgaggttgctagaggaacaccatttggaaatattgtcagatgcattccatggtggctacgtagaggagaagttagccaagaaatctgatgatttcattaccctcctcttgcaagcctacaaccatgaaaatgacatcttcatctttggaaagaagaaattcaggatctcaacaagagatatttcaaagatcctaggactgccagcaaaaggtgagttagtcccaaagacttctgaaggtgcatatcagtccgactttgtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

188

Amino Acids

21.99

Weight (kDa)

9.32

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021663)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003880.1_g000044
rosa_samantha Rh5AG482300 Rh5CG030300 Rh5CG526400 Rh6AG318500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 476, 487
AcsI RAATTY 4 cut(s) 122, 223, 248, 461
AcuI CTGAAG 3 cut(s) 53, 203, 558
AfiI CCNNNNNNNGG 2 cut(s) 172, 512
AgsI TTSAA 8 cut(s) 56, 127, 181, 212, 229, 247, 262, 489
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 2 cut(s) 476, 487
AoxI GGCC 1 cut(s) 64
ApoI RAATTY 4 cut(s) 122, 223, 248, 461
Asp700I GAANNNNTTC 2 cut(s) 216, 461
AspA2I CCTAGG 1 cut(s) 496
AspS9I GGNCC 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 527
AvrII CCTAGG 1 cut(s) 496
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 165
BbvCI CCTCAGC 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 4 cut(s) 90, 197, 314, 497
BlnI CCTAGG 1 cut(s) 496
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 24, 65
BmsI GCATC 1 cut(s) 334
BpiI GAAGAC 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 305
BsaAI YACGTR 1 cut(s) 364
BsaJI CCNNGG 2 cut(s) 352, 496
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 512
BseDI CCNNGG 2 cut(s) 352, 496
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 172, 512
BseMII CTCAG 1 cut(s) 296
BseRI GAGGAG 5 cut(s) 88, 154, 299, 383, 398
BshFI GGCC 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 165
BslFI GGGAC 2 cut(s) 100, 509
BslI CCNNNNNNNGG 2 cut(s) 172, 512
BsmAI GTCTC 1 cut(s) 281
BsmFI GGGAC 2 cut(s) 100, 509
BsmI GAATGC 2 cut(s) 136, 347
BsnI GGCC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 2 cut(s) 468, 492
Bsp19I CCATGG 1 cut(s) 352
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 297
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 24, 65
BspPI GGATC 2 cut(s) 476, 487
BssECI CCNNGG 2 cut(s) 352, 496
BssMI GATC 2 cut(s) 468, 492
BssT1I CCWWGG 2 cut(s) 352, 496
Bst6I CTCTTC 2 cut(s) 3, 107
BstBAI YACGTR 1 cut(s) 364
BstC8I GCNNGC 2 cut(s) 417, 507
BstDEI CTNAG 2 cut(s) 167, 305
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 1 cut(s) 123
BstKTI GATC 2 cut(s) 471, 495
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 2 cut(s) 468, 492
BstMWI GCNNNNNNNGC 1 cut(s) 310
BstSNI TACGTA 1 cut(s) 364
BstV2I GAAGAC 1 cut(s) 193
BstX2I RGATCY 2 cut(s) 468, 492
BstYI RGATCY 2 cut(s) 468, 492
BsuRI GGCC 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 352
BtsCI GGATG 1 cut(s) 123
Cac8I GCNNGC 2 cut(s) 417, 507
CciI TCATGA 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 64
CviAII CATG 3 cut(s) 34, 353, 428
CviJI RGCY 5 cut(s) 66, 163, 360, 380, 419
CviKI_1 RGCY 5 cut(s) 66, 163, 360, 380, 419
DdeI CTNAG 2 cut(s) 167, 305
DpnI GATC 2 cut(s) 470, 494
DpnII GATC 2 cut(s) 468, 492
DraI TTTAAA 1 cut(s) 253
Eam1104I CTCTTC 2 cut(s) 3, 107
EarI CTCTTC 2 cut(s) 3, 107
Ecl136II GAGCTC 1 cut(s) 163
Eco105I TACGTA 1 cut(s) 364
Eco130I CCWWGG 2 cut(s) 352, 496
Eco24I GRGCYC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 163
Eco57I CTGAAG 3 cut(s) 53, 203, 558
EcoICRI GAGCTC 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 352, 496
EcoT22I ATGCAT 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 2 cut(s) 352, 496
FaeI CATG 3 cut(s) 37, 356, 431
FaiI YATR 7 cut(s) 35, 47, 98, 354, 429, 547, 565
FaqI GGGAC 2 cut(s) 100, 509
FatI CATG 3 cut(s) 33, 352, 427
FokI GGATG 1 cut(s) 130
FriOI GRGCYC 1 cut(s) 165
FspBI CTAG 4 cut(s) 90, 197, 314, 497
HaeIII GGCC 1 cut(s) 66
Hin1II CATG 3 cut(s) 37, 356, 431
HphI GGTGA 1 cut(s) 527
Hpy188I TCNGA 6 cut(s) 72, 222, 343, 391, 538, 556
Hpy188III TCNNGA 4 cut(s) 26, 34, 127, 466
HpyAV CCTTC 6 cut(s) 9, 77, 145, 256, 262, 533
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 3 cut(s) 347, 415, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpyF3I CTNAG 2 cut(s) 167, 305
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 3 cut(s) 37, 356, 431
Kzo9I GATC 2 cut(s) 468, 492
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 3 cut(s) 39, 451, 519
LweI GCATC 1 cut(s) 334
MaeI CTAG 4 cut(s) 90, 197, 314, 497
MaeII ACGT 1 cut(s) 363
MalI GATC 2 cut(s) 470, 494
MboI GATC 2 cut(s) 468, 492
MboII GAAGA 5 cut(s) 20, 124, 198, 433, 469
MflI RGATCY 2 cut(s) 468, 492
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 5 cut(s) 122, 212, 223, 248, 461
Mph1103I ATGCAT 1 cut(s) 349
MroXI GAANNNNTTC 2 cut(s) 216, 461
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 432
Mva1269I GAATGC 2 cut(s) 136, 347
MwoI GCNNNNNNNGC 1 cut(s) 310
NcoI CCATGG 1 cut(s) 352
NdeII GATC 2 cut(s) 468, 492
NlaIII CATG 3 cut(s) 37, 356, 431
NlaIV GGNNCC 2 cut(s) 24, 65
NmeAIII GCCGAG 1 cut(s) 160
NsiI ATGCAT 1 cut(s) 349
PagI TCATGA 1 cut(s) 33
PctI GAATGC 2 cut(s) 136, 347
PdmI GAANNNNTTC 2 cut(s) 216, 461
Ppu21I YACGTR 1 cut(s) 364
Psp124BI GAGCTC 1 cut(s) 165
PspN4I GGNNCC 2 cut(s) 24, 65
PspPI GGNCC 1 cut(s) 64
PsuI RGATCY 2 cut(s) 468, 492
RseI CAYNNNNRTG 1 cut(s) 432
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 252
Sau3AI GATC 2 cut(s) 468, 492
Sau96I GGNCC 1 cut(s) 64
SduI GDGCHC 1 cut(s) 165
SetI ASST 8 cut(s) 24, 165, 202, 279, 311, 366, 517, 544
SfaNI GCATC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 432
SnaBI TACGTA 1 cut(s) 364
Sse9I AATT 5 cut(s) 122, 212, 223, 248, 461
SspI AATATT 1 cut(s) 336
SspMI CTAG 4 cut(s) 90, 197, 314, 497
SstI GAGCTC 1 cut(s) 165
StyI CCWWGG 2 cut(s) 352, 496
TaiI ACGT 1 cut(s) 366
TaqI TCGA 1 cut(s) 204
TasI AATT 5 cut(s) 122, 212, 223, 248, 461
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TspDTI ATGAA 7 cut(s) 17, 21, 125, 134, 388, 433, 444
XapI RAATTY 4 cut(s) 122, 223, 248, 461
XmaJI CCTAGG 1 cut(s) 496
XmnI GAANNNNTTC 2 cut(s) 216, 461
XspI CTAG 4 cut(s) 90, 197, 314, 497
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.