Rh5CG526400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0021663
Physical Location & Seq
Forward (+)
73678443 .. 73678862
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG526400.1

Sequence Viewer

Length: 279 bp
ATGAATGAAGAGAGAAGGGAGGTTCCAGAAATCATGAGATACGCCATACCCATTGAAGTTGGGGCCATTCAGAGGAGGATAATGGGGACTAGAGATGTGACAGAGAGAATGAAGAGGATGAAATTCAAGCATGCCAGGAGGAGACTTGGGAAGGAACAAGAGCTCCTAAAATTGGATTTCAGAGGAAGACATTTTCTAGGTTTGGAATTTGAATTGCTTCAGAATCTGAAATGTGTTTTTGGTTTGAAAGTGAGATGTGTGTTTGATTTGAGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

11.03

Weight (kDa)

10.2

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021663)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003880.1_g000044
rosa_samantha Rh5AG482300 Rh5CG030300 Rh5CG526400 Rh6AG318500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 122, 206
AcuI CTGAAG 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 72, 172
AgsI TTSAA 4 cut(s) 56, 127, 212, 247
AjnI CCWGG 1 cut(s) 134
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 136
AlwNI CAGNNNCTG 1 cut(s) 226
AoxI GGCC 1 cut(s) 63
ApoI RAATTY 2 cut(s) 122, 206
Asp700I GAANNNNTTC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 2 cut(s) 90, 197
Bme1390I CCNGG 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 2 cut(s) 24, 64
BmrFI CCNGG 1 cut(s) 136
BpiI GAAGAC 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 172
BseBI CCWGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 72, 172
BseRI GAGGAG 2 cut(s) 88, 154
BshFI GGCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 165
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 2 cut(s) 72, 172
BsmAI GTCTC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 165
BspANI GGCC 1 cut(s) 65
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 24, 64
Bst2UI CCWGG 1 cut(s) 136
Bst6I CTCTTC 2 cut(s) 3, 107
BstC8I GCNNGC 1 cut(s) 132
BstF5I GGATG 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 136
BstNI CCWGG 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 132
CaiI CAGNNNCTG 1 cut(s) 226
CciI TCATGA 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 63
CviAII CATG 2 cut(s) 34, 131
CviJI RGCY 2 cut(s) 65, 163
CviKI_1 RGCY 2 cut(s) 65, 163
Eam1104I CTCTTC 2 cut(s) 3, 107
EarI CTCTTC 2 cut(s) 3, 107
Ecl136II GAGCTC 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 165
FaeI CATG 2 cut(s) 37, 134
FaiI YATR 3 cut(s) 35, 47, 132
FaqI GGGAC 1 cut(s) 100
FatI CATG 2 cut(s) 33, 130
FokI GGATG 1 cut(s) 130
FriOI GRGCYC 1 cut(s) 165
FspBI CTAG 2 cut(s) 90, 197
HaeIII GGCC 1 cut(s) 65
Hin1II CATG 2 cut(s) 37, 134
HinfI GANTC 1 cut(s) 223
Hpy188I TCNGA 4 cut(s) 72, 182, 222, 228
Hpy188III TCNNGA 2 cut(s) 26, 34
HpyAV CCTTC 2 cut(s) 9, 145
Hsp92II CATG 2 cut(s) 37, 134
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 3 cut(s) 39, 121, 148
MaeI CTAG 2 cut(s) 90, 197
MaeIII GTNAC 1 cut(s) 97
MboII GAAGA 3 cut(s) 20, 124, 198
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 4 cut(s) 122, 170, 206, 212
MnlI CCTC 6 cut(s) 13, 66, 69, 108, 132, 176
MroXI GAANNNNTTC 1 cut(s) 216
MseI TTAA 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 136
MvaI CCWGG 1 cut(s) 136
NlaIII CATG 2 cut(s) 37, 134
NlaIV GGNNCC 2 cut(s) 24, 64
NmuCI GTSAC 1 cut(s) 97
NspI RCATGY 1 cut(s) 134
PaeI GCATGC 1 cut(s) 134
PagI TCATGA 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 223
Psp124BI GAGCTC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 24, 64
PspPI GGNCC 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 226
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 136
SduI GDGCHC 1 cut(s) 165
SetI ASST 3 cut(s) 24, 165, 202
SphI GCATGC 1 cut(s) 134
Sse9I AATT 4 cut(s) 122, 170, 206, 212
SspMI CTAG 2 cut(s) 90, 197
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 134
TasI AATT 4 cut(s) 122, 170, 206, 212
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 277
Tru9I TTAA 1 cut(s) 277
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 4 cut(s) 17, 21, 125, 134
XapI RAATTY 2 cut(s) 122, 206
XceI RCATGY 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 2 cut(s) 90, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.