Rh6AG318500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
51788059 .. 51788393
335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG318500.1

Sequence Viewer

Length: 228 bp
ATGAAGAGGATGAAATTCAAGCATGCCAGGAGGAGATTTGGGAAGGAACAAGAGCTCCTAAGACTGGATTTCGGAGGAAGACATTTTCTAGGTTTCGAGTTTGAATTGCTTCAGAATCTGAAATGTGTTTTTGGTTTGAAATTTAATTTGAAGTTTAGGGTTTTGAAGGAGAATGGAAAGGTTGTGGAGGAGACGGAGGAGGTTGTACTAAGGTTGCTAAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

9.1

Weight (kDa)

10.0

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021663)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003880.1_g000044
rosa_samantha Rh5AG482300 Rh5CG030300 Rh5CG526400 Rh6AG318500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 14, 140
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 5 cut(s) 19, 104, 139, 151, 166
AjnI CCWGG 1 cut(s) 26
AloI GAACNNNNNNTCC 2 cut(s) 39, 71
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 118
ApoI RAATTY 2 cut(s) 14, 140
Asp700I GAANNNNTTC 1 cut(s) 108
BanII GRGCYC 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 57
BciT130I CCWGG 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 28
BpiI GAAGAC 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 3 cut(s) 46, 203, 212
BsiHKAI GWGCWC 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 185
BsmBI CGTCTC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 57
BsrI ACTGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 2 cut(s) 59, 209
BstF5I GGATG 1 cut(s) 15
BstMAI GTCTC 1 cut(s) 185
BstNI CCWGG 1 cut(s) 28
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 24
CaiI CAGNNNCTG 1 cut(s) 118
Csp6I GTAC 1 cut(s) 206
CviAII CATG 1 cut(s) 23
CviJI RGCY 1 cut(s) 55
CviKI_1 RGCY 1 cut(s) 55
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 2 cut(s) 59, 209
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 57
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 1 cut(s) 26
FaiI YATR 1 cut(s) 24
FatI CATG 1 cut(s) 22
FokI GGATG 1 cut(s) 22
FriOI GRGCYC 1 cut(s) 57
FspBI CTAG 1 cut(s) 89
Hin1II CATG 1 cut(s) 26
HinfI GANTC 1 cut(s) 115
Hpy188I TCNGA 3 cut(s) 74, 114, 120
HpyAV CCTTC 2 cut(s) 37, 160
HpyF3I CTNAG 2 cut(s) 59, 209
Hsp92II CATG 1 cut(s) 26
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 3 cut(s) 13, 40, 50
MaeI CTAG 1 cut(s) 89
MboII GAAGA 2 cut(s) 16, 90
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 4 cut(s) 14, 104, 140, 145
MnlI CCTC 5 cut(s) 24, 68, 181, 190, 193
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 28
NlaIII CATG 1 cut(s) 26
NspI RCATGY 1 cut(s) 26
PaeI GCATGC 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 115
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
PstNI CAGNNNCTG 1 cut(s) 118
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 144
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 1 cut(s) 57
SetI ASST 5 cut(s) 57, 94, 183, 204, 215
SgeI CNNG 8 cut(s) 31, 35, 39, 40, 62, 77, 101, 109
SphI GCATGC 1 cut(s) 26
Sse9I AATT 4 cut(s) 14, 104, 140, 145
SspMI CTAG 1 cut(s) 89
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 26
TaqI TCGA 1 cut(s) 96
TasI AATT 4 cut(s) 14, 104, 140, 145
TatI WGTACW 1 cut(s) 205
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 17, 26
TspGWI ACGGA 1 cut(s) 209
XapI RAATTY 2 cut(s) 14, 140
XceI RCATGY 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.