Rmu_sc0003942.1_g000025

Serine threonine-protein phosphatase 4 regulatory subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003942.1
OG0008808
Physical Location & Seq
Reverse (-)
92378 .. 93702
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 972 bp
ctgataaatcatattgtgaggaacaaccttctcaaaccaattatcgatgcatttgttggtaatggcaatcgatataacctgctaaactcagctgttttggaactttttgagtacatccggaaggaaaatctgaaatctttggttaaatacttggttgattcattctggattcagttggtcaaatttgagtatttgtcgtccgttcactctctaaaagttaaacatgagcagttcctagaaagttttggaacgaaaggaaccgttaatgtgtcggacaatagaaaacgaggtgatgagcgtgctttggagaaagaagaagaagactattttaatgaggacagtgatgaagaagacacagcatctgcatccatgtcaaatacccaaaaagtacagacacaacctcaagctgttttatccaatggagttgctgcaagccaaccaccatccaggtctgttgggctggtagactatgatgacgatgaggatgacgaagactacaagccaccgcccaagaagcagcctgatacttctgaggaagatgaaggaacaatggagtcccttaagttgaagaggaaattggcttctaaggatagggagcctgagctaacaaagaggcaacggttgggtaaaaacccaaagccaaaagaaagtgttttggctgctttttgtacaaatctaaacccgtcggtgctaccaaataagaaagctgcaatcagtatgcattctagtcgaacagctgatggggttaagaactcagatgatgtttctctagagaatgatagtgctgcttctagaagctgttccaataacaacagttcagatgaggaggatcgtaaggagaatgagcctgctagttctagaggctcctctgattgcttgcatggcactctggagaatagacagttgggcgcagaggactgcccgttgataccaccgaaatcctcaccggaaatggctgtaaatgggtcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04212 ko04922 map04212 map04922
Pfam Domains
Protein Families
SMK-1

Protein Analysis

323

Amino Acids

35.92

Weight (kDa)

5.0

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP4R3 PF04802 2 - 77 6.2e-22 Phosphatase 4 regulatory subunit 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 87
AccI GTMKAC 1 cut(s) 465
AccIII TCCGGA 1 cut(s) 117
AciI CCGC 1 cut(s) 506
AclWI GGATC 1 cut(s) 837
AcsI RAATTY 1 cut(s) 182
AfaI GTAC 3 cut(s) 113, 390, 670
AflII CTTAAG 1 cut(s) 560
AgsI TTSAA 1 cut(s) 568
AjnI CCWGG 1 cut(s) 446
AjuI GAANNNNNNNTTGG 4 cut(s) 560, 592, 887, 919
AluBI AGCT 6 cut(s) 92, 407, 604, 707, 737, 798
AluI AGCT 6 cut(s) 92, 407, 604, 707, 737, 798
AlwI GGATC 1 cut(s) 837
AlwNI CAGNNNCTG 1 cut(s) 362
Aor13HI TCCGGA 1 cut(s) 117
ApeKI GCWGC 5 cut(s) 428, 517, 659, 707, 785
ApoI RAATTY 1 cut(s) 182
Asp700I GAANNNNTTC 1 cut(s) 799
AspLEI GCGC 1 cut(s) 911
AsuHPI GGTGA 2 cut(s) 302, 936
BbsI GAAGAC 3 cut(s) 327, 357, 498
BbvI GCAGC 5 cut(s) 415, 529, 646, 694, 772
BccI CCATC 2 cut(s) 451, 734
BcgI CGANNNNNNTGC 2 cut(s) 710, 744
BciT130I CCWGG 1 cut(s) 448
BfaI CTAG 6 cut(s) 236, 726, 770, 792, 852, 858
BfrI CTTAAG 1 cut(s) 560
BfuAI ACCTGC 1 cut(s) 87
BisI GCNGC 5 cut(s) 429, 518, 660, 708, 786
BlsI GCNGC 5 cut(s) 430, 519, 661, 709, 787
Bme1390I CCNGG 1 cut(s) 448
BmiI GGNNCC 3 cut(s) 259, 597, 865
BmrFI CCNGG 1 cut(s) 448
BmsI GCATC 3 cut(s) 37, 368, 374
BpiI GAAGAC 3 cut(s) 327, 357, 498
BpmI CTGGAG 1 cut(s) 911
Bpu10I CCTNAGC 1 cut(s) 600
BpuEI CTTGAG 1 cut(s) 387
Bsa29I ATCGAT 2 cut(s) 45, 70
BsaWI WCCGGW 2 cut(s) 117, 946
BseAI TCCGGA 1 cut(s) 117
BseBI CCWGG 1 cut(s) 448
BseCI ATCGAT 2 cut(s) 45, 70
BseGI GGATG 4 cut(s) 114, 365, 443, 490
BseMII CTCAG 4 cut(s) 102, 522, 591, 768
BseRI GAGGAG 2 cut(s) 839, 856
BseXI GCAGC 5 cut(s) 415, 529, 646, 694, 772
BshVI ATCGAT 2 cut(s) 45, 70
BsiSI CCGG 2 cut(s) 118, 947
BslFI GGGAC 1 cut(s) 541
BsmFI GGGAC 1 cut(s) 541
BsmI GAATGC 1 cut(s) 721
Bsp13I TCCGGA 1 cut(s) 117
Bsp1407I TGTACA 1 cut(s) 668
Bsp143I GATC 1 cut(s) 829
BspACI CCGC 1 cut(s) 506
BspCNI CTCAG 4 cut(s) 101, 523, 592, 767
BspDI ATCGAT 2 cut(s) 45, 70
BspEI TCCGGA 1 cut(s) 117
BspLI GGNNCC 3 cut(s) 259, 597, 865
BspMI ACCTGC 1 cut(s) 87
BspPI GGATC 1 cut(s) 837
BspTI CTTAAG 1 cut(s) 560
BsrGI TGTACA 1 cut(s) 668
BssMI GATC 1 cut(s) 829
Bst2UI CCWGG 1 cut(s) 448
Bst4CI ACNGT 5 cut(s) 262, 341, 621, 815, 903
Bst6I CTCTTC 1 cut(s) 563
BstAFI CTTAAG 1 cut(s) 560
BstAUI TGTACA 1 cut(s) 668
BstC8I GCNNGC 4 cut(s) 300, 433, 849, 878
BstDEI CTNAG 5 cut(s) 88, 531, 585, 600, 754
BstF5I GGATG 4 cut(s) 114, 365, 443, 490
BstHHI GCGC 1 cut(s) 911
BstKTI GATC 1 cut(s) 832
BstMBI GATC 1 cut(s) 829
BstMWI GCNNNNNNNGC 2 cut(s) 514, 882
BstNI CCWGG 1 cut(s) 448
BstSCI CCNGG 1 cut(s) 446
BstV1I GCAGC 5 cut(s) 415, 529, 646, 694, 772
BstV2I GAAGAC 3 cut(s) 327, 357, 498
Bsu15I ATCGAT 2 cut(s) 45, 70
BsuTUI ATCGAT 2 cut(s) 45, 70
BtsCI GGATG 4 cut(s) 114, 365, 443, 490
BtsIMutI CAGTG 1 cut(s) 346
BveI ACCTGC 1 cut(s) 87
Cac8I GCNNGC 4 cut(s) 300, 433, 849, 878
CaiI CAGNNNCTG 1 cut(s) 362
CfoI GCGC 1 cut(s) 911
ClaI ATCGAT 2 cut(s) 45, 70
Csp6I GTAC 3 cut(s) 112, 389, 669
CviAII CATG 3 cut(s) 224, 370, 881
CviQI GTAC 3 cut(s) 112, 389, 669
DdeI CTNAG 5 cut(s) 88, 531, 585, 600, 754
DpnI GATC 1 cut(s) 831
DpnII GATC 1 cut(s) 829
Eam1104I CTCTTC 1 cut(s) 563
EarI CTCTTC 1 cut(s) 563
EcoRII CCWGG 1 cut(s) 446
EcoT22I ATGCAT 2 cut(s) 52, 723
FaeI CATG 3 cut(s) 227, 373, 884
FaiI YATR 7 cut(s) 12, 75, 225, 371, 471, 719, 882
FaqI GGGAC 1 cut(s) 541
FatI CATG 3 cut(s) 223, 369, 880
FblI GTMKAC 1 cut(s) 465
Fnu4HI GCNGC 5 cut(s) 429, 518, 660, 708, 786
FokI GGATG 4 cut(s) 101, 352, 430, 497
Fsp4HI GCNGC 5 cut(s) 429, 518, 660, 708, 786
FspBI CTAG 6 cut(s) 236, 726, 770, 792, 852, 858
GlaI GCGC 1 cut(s) 910
GluI GCNGC 5 cut(s) 429, 518, 660, 708, 786
GsuI CTGGAG 1 cut(s) 911
HapII CCGG 2 cut(s) 118, 947
HhaI GCGC 1 cut(s) 911
Hin1II CATG 3 cut(s) 227, 373, 884
Hin6I GCGC 1 cut(s) 909
HinP1I GCGC 1 cut(s) 909
HinfI GANTC 3 cut(s) 158, 169, 554
HpaII CCGG 2 cut(s) 118, 947
HphI GGTGA 2 cut(s) 302, 936
Hpy166II GTNNAC 2 cut(s) 205, 466
Hpy188I TCNGA 6 cut(s) 132, 274, 532, 757, 820, 871
Hpy188III TCNNGA 6 cut(s) 118, 166, 770, 792, 858, 890
Hpy8I GTNNAC 2 cut(s) 205, 466
Hpy99I CGWCG 1 cut(s) 688
HpyAV CCTTC 3 cut(s) 38, 115, 536
HpyCH4III ACNGT 5 cut(s) 262, 341, 621, 815, 903
HpyCH4V TGCA 6 cut(s) 50, 365, 431, 710, 721, 880
HpyF10VI GCNNNNNNNGC 2 cut(s) 514, 882
HpyF3I CTNAG 5 cut(s) 88, 531, 585, 600, 754
Hsp92II CATG 3 cut(s) 227, 373, 884
HspAI GCGC 1 cut(s) 909
Kpn2I TCCGGA 1 cut(s) 117
Kzo9I GATC 1 cut(s) 829
LmnI GCTCC 2 cut(s) 595, 869
Lsp1109I GCAGC 5 cut(s) 415, 529, 646, 694, 772
LweI GCATC 3 cut(s) 37, 368, 374
MaeI CTAG 6 cut(s) 236, 726, 770, 792, 852, 858
MalI GATC 1 cut(s) 831
MboI GATC 1 cut(s) 829
MboII GAAGA 8 cut(s) 326, 329, 332, 359, 362, 503, 548, 580
MluCI AATT 3 cut(s) 39, 182, 575
MlyI GAGTC 1 cut(s) 563
MmeI TCCRAC 1 cut(s) 252
Mph1103I ATGCAT 2 cut(s) 52, 723
MroI TCCGGA 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 799
MseI TTAA 6 cut(s) 144, 219, 264, 330, 561, 747
MspA1I CMGCKG 2 cut(s) 92, 737
MspCI CTTAAG 1 cut(s) 560
MspI CCGG 2 cut(s) 118, 947
MspR9I CCNGG 1 cut(s) 448
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 1 cut(s) 448
MwoI GCNNNNNNNGC 2 cut(s) 514, 882
NdeII GATC 1 cut(s) 829
NlaIII CATG 3 cut(s) 227, 373, 884
NlaIV GGNNCC 3 cut(s) 259, 597, 865
NsiI ATGCAT 2 cut(s) 52, 723
PctI GAATGC 1 cut(s) 721
PdmI GAANNNNTTC 1 cut(s) 799
PfeI GAWTC 2 cut(s) 158, 169
PkrI GCNGC 5 cut(s) 430, 519, 661, 709, 787
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
Psp6I CCWGG 1 cut(s) 446
PspGI CCWGG 1 cut(s) 446
PspN4I GGNNCC 3 cut(s) 259, 597, 865
PstNI CAGNNNCTG 1 cut(s) 362
PvuII CAGCTG 2 cut(s) 92, 737
RsaI GTAC 3 cut(s) 113, 390, 670
RsaNI GTAC 3 cut(s) 112, 389, 669
SaqAI TTAA 6 cut(s) 144, 219, 264, 330, 561, 747
SatI GCNGC 5 cut(s) 429, 518, 660, 708, 786
Sau3AI GATC 1 cut(s) 829
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 1 cut(s) 448
SfaNI GCATC 3 cut(s) 37, 368, 374
SmlI CTYRAG 2 cut(s) 402, 560
SmoI CTYRAG 2 cut(s) 402, 560
Sse9I AATT 3 cut(s) 39, 182, 575
SsiI CCGC 1 cut(s) 506
SspMI CTAG 6 cut(s) 236, 726, 770, 792, 852, 858
StyD4I CCNGG 1 cut(s) 446
TaaI ACNGT 5 cut(s) 262, 341, 621, 815, 903
TaqI TCGA 3 cut(s) 45, 70, 730
TasI AATT 3 cut(s) 39, 182, 575
TatI WGTACW 3 cut(s) 111, 388, 668
TfiI GAWTC 2 cut(s) 158, 169
Tru1I TTAA 6 cut(s) 144, 219, 264, 330, 561, 747
Tru9I TTAA 6 cut(s) 144, 219, 264, 330, 561, 747
TscAI CASTG 1 cut(s) 346
TseI GCWGC 5 cut(s) 428, 517, 659, 707, 785
TspDTI ATGAA 3 cut(s) 150, 360, 555
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 1 cut(s) 346
Vha464I CTTAAG 1 cut(s) 560
XapI RAATTY 1 cut(s) 182
XbaI TCTAGA 3 cut(s) 769, 791, 857
XmiI GTMKAC 1 cut(s) 465
XmnI GAANNNNTTC 1 cut(s) 799
XspI CTAG 6 cut(s) 236, 726, 770, 792, 852, 858
Zsp2I ATGCAT 2 cut(s) 52, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.