Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004077.1

Orthogroup ID

OG0018657

Physical Location & Seq

Genomic Coordinates Reverse (-)

37811 .. 38573

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgggaagctggaacctcagtgatgaaatacgaatttatggacgtgcaaacctgaatagggcctttgatggtgatatagtggcagtccagcttctgcctggggagcaatggcatgaggataaatctatggctatagcagccgaagaggatgaagaaggtgttcatctggttcctggcagtgctgatgatgttcctagaaaaacagctcaaggctcaaccacgagattcgctggagaaacatgttctatttcaagttgtccatttggccgtattgttggtataataaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000178 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004527 GO:0004532 GO:0004540 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0019899 GO:0022613 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0051020 GO:0065007 GO:0065009 GO:0070013 GO:0071034 GO:0071043 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0098772 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PIN_4 RNB Rrp44_CSD1 Rrp44_S1

Protein Analysis

96

Amino Acids

10.39

Weight (kDa)

4.72

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rrp44_CSD1	PF17216	6 - 49	9.4e-07	Rrp44-like cold shock domain
OB_HELZ2	PF25049	7 - 41	8.6e-06	3'-5' exoribonuclease HELZ2, OB-fold domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018657)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015477
rosa_multiflora	Rmu_sc0004077.1_g000012
rosa_roxburghii	Rroxscaffold_7G00216950
rosa_samantha	Rh6BG002100 Rh6CG006800 Rh6CG006900 Rh6CG008100 Rh6DG007200 Rh6DG007300 Rh6DG009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	58
AflIII	ACRYGT	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	252
AjiI	CACGTC	1 cut(s)	44
AjnI	CCWGG	2 cut(s)	97, 172
AluBI	AGCT	3 cut(s)	9, 91, 206
AluI	AGCT	3 cut(s)	9, 91, 206
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	2 cut(s)	60, 265
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	33
Asp700I	GAANNNNTTC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	83
BauI	CACGAG	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	252
BciT130I	CCWGG	2 cut(s)	99, 174
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	2 cut(s)	99, 174
BmgBI	CACGTC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	14, 171
BmrFI	CCNGG	2 cut(s)	99, 174
BpmI	CTGGAG	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	113
BseBI	CCWGG	2 cut(s)	99, 174
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	149
BshFI	GGCC	2 cut(s)	62, 267
BslI	CCNNNNNNNGG	1 cut(s)	58
BsnI	GGCC	2 cut(s)	62, 267
BspANI	GGCC	2 cut(s)	62, 267
BspCNI	CTCAG	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	14, 171
BsrDI	GCAATG	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	98
BssSI	CACGAG	1 cut(s)	220
Bst2BI	CACGAG	1 cut(s)	220
Bst2UI	CCWGG	2 cut(s)	99, 174
Bst6I	CTCTTC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 137
BstNI	CCWGG	2 cut(s)	99, 174
BstNSI	RCATGY	1 cut(s)	243
BstSCI	CCNGG	2 cut(s)	97, 172
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	62, 267
BtrI	CACGTC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	25, 184
CaiI	CAGNNNCTG	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	60
CviAII	CATG	2 cut(s)	113, 240
CviJI	RGCY	8 cut(s)	9, 62, 91, 131, 140, 206, 213, 267
CviKI_1	RGCY	8 cut(s)	9, 62, 91, 131, 140, 206, 213, 267
DdeI	CTNAG	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	97, 172
FaeI	CATG	2 cut(s)	116, 243
FaiI	YATR	7 cut(s)	39, 77, 114, 128, 134, 241, 281
FatI	CATG	2 cut(s)	112, 239
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	252
HaeIII	GGCC	2 cut(s)	62, 267
Hin1II	CATG	2 cut(s)	116, 243
HinfI	GANTC	1 cut(s)	225
HphI	GGTGA	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 137
HpyF3I	CTNAG	1 cut(s)	17
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	2 cut(s)	116, 243
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	8 cut(s)	65, 84, 101, 111, 152, 159, 186, 216
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	1 cut(s)	43
MboII	GAAGA	2 cut(s)	155, 164
MluCI	AATT	1 cut(s)	33
MnlI	CCTC	3 cut(s)	26, 109, 139
MroXI	GAANNNNTTC	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	99, 174
MvaI	CCWGG	2 cut(s)	99, 174
MwoI	GCNNNNNNNGC	2 cut(s)	103, 137
NlaIII	CATG	2 cut(s)	116, 243
NlaIV	GGNNCC	2 cut(s)	14, 171
NspI	RCATGY	1 cut(s)	243
PciI	ACATGT	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	139
PscI	ACATGT	1 cut(s)	239
Psp6I	CCWGG	2 cut(s)	97, 172
PspGI	CCWGG	2 cut(s)	97, 172
PspN4I	GGNNCC	2 cut(s)	14, 171
PspPI	GGNCC	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	94
SatI	GCNGC	1 cut(s)	138
Sau96I	GGNCC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	99, 174
SetI	ASST	7 cut(s)	11, 18, 46, 54, 93, 160, 208
SfcI	CTRYAG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	1 cut(s)	33
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	97, 172
TaiI	ACGT	1 cut(s)	46
TasI	AATT	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	225
TscAI	CASTG	2 cut(s)	25, 184
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	3 cut(s)	39, 152, 165
TspRI	CASTG	2 cut(s)	25, 184
XapI	RAATTY	1 cut(s)	33
XceI	RCATGY	1 cut(s)	243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.