Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004359.1

Orthogroup ID

OG0019362

Physical Location & Seq

Genomic Coordinates Forward (+)

65629 .. 67466

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004359.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgcttatggatttgaatgttgtttcggcggcggaggagtcggcggcgacggtggcgattctggtagtggagtcaaagtggcgctcgcggagaacgttgtcctctaatttttgctgggcgcggcgtcgctggttgaatttctcgaaggtaattgatgtgtatgatgaacaatccgaggttgcagactggattagaattaagacggtccccctcttccatttctataaagatggtgttctcttggaagcattcccaactagagacgaggagaggatcactgcggcaattcgtaaatacacatctcctgcaacatctattatctgtgataatcgttgttttggaggtttgccatttgctctcatgcatagacagaatgttctttatagcaaggccgatgcctcattcaattttggatcaaaaccaatcataaaaagtcctatctcatttcctgagagaacacatgttggattatgccctagcatcagaattacaggttgggaagtttcaaagtttagatctggatttcgtttattaagaagatcagagtggctgatgaaaatcaaggagaattttctgatgaagatgatgatctatgtccagttgaatgttttagagaattttatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

208

Amino Acids

24.18

Weight (kDa)

9.59

Isoelectric Point (pI)

58.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019362)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138861
rosa_multiflora	Rmu_sc0004359.1_g000016
rosa_roxburghii	Rroxscaffold_4G00313310
rosa_rugosa	Rorug04G0083800 Rorug04G0160500
rosa_samantha	Rh2CG371900 Rh4BG023300 Rh6BG022100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	88, 121
AciI	CCGC	6 cut(s)	29, 32, 44, 88, 121, 281
AclI	AACGTT	1 cut(s)	95
AclWI	GGATC	2 cut(s)	281, 421
AcsI	RAATTY	3 cut(s)	136, 568, 616
AcyI	GRCGYC	1 cut(s)	124
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	5 cut(s)	16, 136, 406, 507, 604
AjuI	GAANNNNNNNTTGG	2 cut(s)	478, 510
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	2 cut(s)	281, 421
AoxI	GGCC	1 cut(s)	390
ApoI	RAATTY	3 cut(s)	136, 568, 616
AspLEI	GCGC	2 cut(s)	84, 121
AspS9I	GGNCC	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	205
BccI	CCATC	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	2 cut(s)	258, 477
BfoI	RGCGCY	1 cut(s)	85
BglII	AGATCT	1 cut(s)	515
BisI	GCNGC	4 cut(s)	30, 45, 122, 282
BlsI	GCNGC	4 cut(s)	31, 46, 123, 283
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	207
BmsI	GCATC	2 cut(s)	385, 489
BsaBI	GATNNNNATC	2 cut(s)	557, 587
BsaHI	GRCGYC	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bse1I	ACTGG	2 cut(s)	191, 598
Bse8I	GATNNNNATC	2 cut(s)	557, 587
BseDI	CCNNGG	1 cut(s)	174
BseJI	GATNNNNATC	2 cut(s)	557, 587
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	2 cut(s)	191, 598
BseRI	GAGGAG	2 cut(s)	50, 281
BseYI	CCCAGC	1 cut(s)	114
Bsh1236I	CGCG	2 cut(s)	88, 121
BshFI	GGCC	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	255
BsmBI	CGTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	392
Bsp143I	GATC	5 cut(s)	273, 413, 515, 539, 588
BspACI	CCGC	6 cut(s)	29, 32, 44, 88, 121, 281
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	2 cut(s)	88, 121
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	2 cut(s)	281, 421
BsrI	ACTGG	2 cut(s)	191, 598
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	5 cut(s)	273, 413, 515, 539, 588
BssNI	GRCGYC	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	52, 205
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	450
BstFNI	CGCG	2 cut(s)	88, 121
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	2 cut(s)	84, 121
BstKTI	GATC	5 cut(s)	276, 416, 518, 542, 591
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	5 cut(s)	273, 413, 515, 539, 588
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	464
BstUI	CGCG	2 cut(s)	88, 121
BstX2I	RGATCY	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	515
BsuRI	GGCC	1 cut(s)	392
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	86
CfoI	GCGC	2 cut(s)	84, 121
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	1 cut(s)	113
CviAII	CATG	2 cut(s)	361, 461
CviJI	RGCY	2 cut(s)	392, 550
CviKI_1	RGCY	2 cut(s)	392, 550
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	5 cut(s)	275, 415, 517, 541, 590
DpnII	GATC	5 cut(s)	273, 413, 515, 539, 588
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	366
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	2 cut(s)	364, 464
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	2 cut(s)	360, 460
Fnu4HI	GCNGC	4 cut(s)	30, 45, 122, 282
Fsp4HI	GCNGC	4 cut(s)	30, 45, 122, 282
FspBI	CTAG	2 cut(s)	258, 477
GlaI	GCGC	2 cut(s)	83, 120
GluI	GCNGC	4 cut(s)	30, 45, 122, 282
GsaI	CCCAGC	1 cut(s)	118
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	392
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	2 cut(s)	84, 121
Hin1I	GRCGYC	1 cut(s)	124
Hin1II	CATG	2 cut(s)	364, 464
Hin6I	GCGC	2 cut(s)	82, 119
HinP1I	GCGC	2 cut(s)	82, 119
HinfI	GANTC	3 cut(s)	38, 58, 71
Hpy188I	TCNGA	5 cut(s)	175, 485, 544, 576, 626
Hpy188III	TCNNGA	3 cut(s)	142, 449, 519
Hpy99I	CGWCG	2 cut(s)	52, 129
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	52, 205
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	3 cut(s)	182, 308, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	124
Hsp92II	CATG	2 cut(s)	364, 464
HspAI	GCGC	2 cut(s)	82, 119
Kzo9I	GATC	5 cut(s)	273, 413, 515, 539, 588
LpnPI	CCDG	9 cut(s)	47, 100, 115, 172, 318, 462, 477, 504, 611
LweI	GCATC	2 cut(s)	385, 489
MaeI	CTAG	2 cut(s)	258, 477
MaeII	ACGT	1 cut(s)	95
MalI	GATC	5 cut(s)	275, 415, 517, 541, 590
MboI	GATC	5 cut(s)	273, 413, 515, 539, 588
MboII	GAAGA	3 cut(s)	205, 549, 592
MflI	RGATCY	1 cut(s)	515
MluCI	AATT	9 cut(s)	106, 136, 150, 195, 285, 406, 486, 568, 616
MlyI	GAGTC	2 cut(s)	47, 80
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	8 cut(s)	28, 112, 169, 221, 259, 264, 335, 409
Mph1103I	ATGCAT	1 cut(s)	366
MseI	TTAA	2 cut(s)	198, 533
Mva1269I	GAATGC	1 cut(s)	248
MvnI	CGCG	2 cut(s)	88, 121
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	5 cut(s)	273, 413, 515, 539, 588
NlaIII	CATG	2 cut(s)	364, 464
NlaIV	GGNNCC	1 cut(s)	207
NsiI	ATGCAT	1 cut(s)	366
NspI	RCATGY	1 cut(s)	464
PciI	ACATGT	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PctI	GAATGC	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	31, 46, 123, 283
PleI	GAGTC	2 cut(s)	46, 79
PpsI	GAGTC	2 cut(s)	46, 79
PscI	ACATGT	1 cut(s)	460
Psp1406I	AACGTT	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	198, 533
SatI	GCNGC	4 cut(s)	30, 45, 122, 282
Sau3AI	GATC	5 cut(s)	273, 413, 515, 539, 588
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	2 cut(s)	47, 80
SetI	ASST	5 cut(s)	98, 150, 180, 346, 496
SfaNI	GCATC	2 cut(s)	385, 489
SinI	GGWCC	1 cut(s)	205
Sse9I	AATT	9 cut(s)	106, 136, 150, 195, 285, 406, 486, 568, 616
SsiI	CCGC	6 cut(s)	29, 32, 44, 88, 121, 281
SspMI	CTAG	2 cut(s)	258, 477
TaaI	ACNGT	2 cut(s)	52, 205
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	1 cut(s)	143
TasI	AATT	9 cut(s)	106, 136, 150, 195, 285, 406, 486, 568, 616
TauI	GCSGC	4 cut(s)	32, 47, 124, 284
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	198, 533
Tru9I	TTAA	2 cut(s)	198, 533
TscAI	CASTG	1 cut(s)	283
TspDTI	ATGAA	3 cut(s)	180, 569, 593
TspRI	CASTG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	3 cut(s)	136, 568, 616
XceI	RCATGY	1 cut(s)	464
XspI	CTAG	2 cut(s)	258, 477
Zsp2I	ATGCAT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.