Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003962

Physical Location & Seq

Genomic Coordinates Reverse (-)

12732623 .. 12834344

Gene Structure 101722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0083800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGGCTACGGCGTCAGTGGCTTTCAAATCGAGGGAGGATCATCGAAAGCAAATTGAATTGGAGGAAGCACGTAAAGCTGGGCTAGCACCAGCTGAAGTTGATGAAGATGGGAAAGAGATCAATCCTCATATTCCGCAGTATATGTCATCCGCTCCTTGGTATCTTAATGCTGAGAAGCCGAGCTTGAAACATCAAAGAAAATGGAAATCAGATCCAAATTATACAAAAGCCTGGTATGACAGAGGTGCAAAAATATTTCGGGCTGATAAGTACCGGAAAGGAGCTTGTGAAAACTGTGGGGCCATGACACATAATGCAAAGTCCTGCATGGAGAGGCCTAGAAAGAAAGGAGCAAAATGGACTAGCATGCACATTGCACCTGATGAAAAGATAGAGATCTTCGAGCTGGATTATGATGGCAAAAGGGATAGATGGAATGGTTTTGATGCTGCAACTTATGCTCGTGTCATTGAGAGATATGAAGCAAGGGATGAGGCTAGAAGGAAGTACCTGAAAGAGCAGCAGCTGAAAAGGTTAGAGGAGAAAAATAGTAAGCAGAATGGAGAGGGGGAGGTCAGTGATGACGATGAGTATGAAGATGCTCTGAAGGTCGATGAGGCCAAGGTTGATGAAAGCAAACAAATGGATTTTGCAAAGGTTGAGAAGCGTGTTCGCACAACCGGTGGTGGAAGCACAGGAACTGTCAGAAATTTGCGTATTCGGGAGGACACAGCGAAGTATCTTTTAAACCTTGATGTCAACTCTGCTTATTATGATCCCAAAACTCGGTCCATGCGTGAAGATCCTCTTCCTGATGCTGACCCAAATGAGAAGTTTTATGCAGGAGATAACAAATACAGAGTGAGTGGGCAAGCTTTAGATTTCAAGCAGCTCAATATTCATGCATGGGAAGCATTTGAAAAAGGACAAGACGTGCACATGCAAGCTGCTCCATCTCAAGCGGAATTGCTTTTTAAGAACTATAAGGTCATTAAGGAGAAGTTGAAGTCAAAAATGAAAGATGCCATTATGGAGAAGTATGGGAATGCTGCAACTGTAGAAGAACTTCCTAAGGAGCTTCTTTTTGGACAAACTGAGAAAGAAGTTGAATATGACCGTGCTGGAAGAGTTATAAAGGGCATGGAGACATCCTTGCCGAAAAGCAAGTATGAGGAGGATGTTTACATCAATAACCACACAAGTGTCTGGGGGTCATGGTGGAAGGATCACCAATGGGGCTACAAGTGTTGCAAGCAAACAATTCAGAACAGTTATTGCAATGGTGCAGCTGGAATTGAGGCATCTGAGTCAGCTGCCAACCTAATGAAGGCAAATATTGACCGCAAAGCAGCCTCTGAAGAGACCTCCTCTCCAACAGAAGAGAAAAGGCTTGCTACTTGGGGAGCTGATATACCTGAAGACTTGGAGCTTGACCAGAAAAAACTTGGTGATGCTCTTAAGAAGGAGGATGAGAGAAGGAAGGAAGAGAAGGATGAAAGAAATCGTAAATATAATGTTACATGGAATGATGAGGTTACTCCTGAGGAGATGGAGGCATATCGAATGAAAAAGGTACATCATGATGATCCGATGAAAGATTTTGTGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0006629 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0008202 GO:0009791 GO:0010154 GO:0016020 GO:0016125 GO:0016740 GO:0016757 GO:0016758 GO:0016906 GO:0022414 GO:0032501 GO:0032502 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051507 GO:0061458 GO:0071704 GO:0071944 GO:0080043 GO:0080044 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_28 UDPGT

Protein Analysis

536

Amino Acids

62.13

Weight (kDa)

6.24

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Slu7	PF11708	136 - 405	1.9e-95	Pre-mRNA splicing Prp18-interacting factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318821 RchiOBHm_Chr1g0318831 RchiOBHm_Chr1g0346331 RchiOBHm_Chr4g0409541 RchiOBHm_Chr5g0051691 RchiOBHm_Chr7g0235061 RchiOBHm_Chr7g0235071
rosa_multiflora	Rmu_co8511089.1_g000002 Rmu_sc0001141.1_g000012 Rmu_sc0007791.1_g000003 Rmu_sc0009346.1_g000011 Rmu_sc0014538.1_g000001 Rmu_ssc0000368.1_g000052
rosa_roxburghii	Rroxscaffold_1G00017540 Rroxscaffold_5G00346710 Rroxscaffold_5G00350080 Rroxscaffold_5G00363030
rosa_rugosa	Rorug01G0067000 Rorug01G0211600 Rorug02G0440000 Rorug02G0478600 Rorug03G0012700 Rorug04G0064400 Rorug04G0083800 Rorug05G0214100 Rorug06G0052700 Rorug07G0206200 Rorug07G0268600 Rorug07G0313000
rosa_samantha	Rh4CG156700 Rh5BG128100 Rh5BG361200 Rh7BG438500 Rh7CG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1133
AccBSI	CCGCTC	1 cut(s)	152
AciI	CCGC	4 cut(s)	134, 150, 962, 1342
AclWI	GGATC	6 cut(s)	45, 206, 770, 797, 1233, 1580
AcsI	RAATTY	1 cut(s)	709
AcuI	CTGAAG	4 cut(s)	114, 626, 1377, 1437
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	3 cut(s)	272, 509, 1575
AfiI	CCNNNNNNNGG	3 cut(s)	156, 786, 1327
AflII	CTTAAG	1 cut(s)	1457
AgeI	ACCGGT	1 cut(s)	680
AgsI	TTSAA	7 cut(s)	25, 56, 187, 886, 920, 1006, 1109
AjiI	CACGTC	1 cut(s)	934
AjnI	CCWGG	1 cut(s)	230
AleI	CACNNNNGTG	1 cut(s)	1200
Alw21I	GWGCWC	1 cut(s)	939
Alw26I	GTCTC	2 cut(s)	1139, 1355
Alw44I	GTGCAC	1 cut(s)	935
AlwI	GGATC	6 cut(s)	45, 206, 770, 797, 1233, 1580
AlwNI	CAGNNNCTG	3 cut(s)	526, 701, 1355
AoxI	GGCC	3 cut(s)	300, 335, 618
ApaLI	GTGCAC	1 cut(s)	935
ApeKI	GCWGC	9 cut(s)	449, 520, 523, 889, 947, 1049, 1286, 1313, 1349
ApoI	RAATTY	1 cut(s)	709
AsiGI	ACCGGT	1 cut(s)	680
Asp700I	GAANNNNTTC	1 cut(s)	1065
AspLEI	GCGC	1 cut(s)	1608
AspS9I	GGNCC	2 cut(s)	300, 789
AsuHPI	GGTGA	2 cut(s)	1220, 1460
AsuNHI	GCTAGC	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	789
AxyI	CCTNAGG	2 cut(s)	1071, 1542
BaeGI	GKGCMC	1 cut(s)	939
BarI	GAAGNNNNNNTAC	2 cut(s)	1050, 1082
BauI	CACGAG	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	1425
Bbv12I	GWGCWC	1 cut(s)	939
BbvI	GCAGC	9 cut(s)	436, 532, 535, 901, 934, 1036, 1298, 1300, 1361
BccI	CCATC	5 cut(s)	101, 410, 426, 961, 1543
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	1139, 1355
BfaI	CTAG	5 cut(s)	83, 339, 363, 498, 1609
BfmI	CTRYAG	1 cut(s)	1056
BfrI	CTTAAG	1 cut(s)	1457
BglII	AGATCT	1 cut(s)	396
BisI	GCNGC	9 cut(s)	450, 521, 524, 890, 948, 1050, 1287, 1314, 1350
BlsI	GCNGC	9 cut(s)	451, 522, 525, 891, 949, 1051, 1288, 1315, 1351
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	789
BmgBI	CACGTC	1 cut(s)	934
BmgT120I	GGNCC	2 cut(s)	300, 789
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	6 cut(s)	436, 589, 805, 1012, 1310, 1441
BmtI	GCTAGC	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	1425
BplI	GAGNNNNNCTC	2 cut(s)	1352, 1384
BpuEI	CTTGAG	1 cut(s)	942
BsaAI	YACGTR	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	1355
BsaJI	CCNNGG	2 cut(s)	155, 621
BsaWI	WCCGGW	2 cut(s)	273, 680
BsaXI	ACNNNNNCTCC	2 cut(s)	1354, 1384
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 786, 1327
Bse118I	RCCGGY	1 cut(s)	680
Bse21I	CCTNAGG	2 cut(s)	1071, 1542
Bse3DI	GCAATG	2 cut(s)	372, 1285
Bse8I	GATNNNNATC	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	2 cut(s)	155, 621
BseGI	GGATG	6 cut(s)	146, 496, 1148, 1183, 1474, 1498
BseJI	GATNNNNATC	1 cut(s)	395
BseLI	CCNNNNNNNGG	3 cut(s)	156, 786, 1327
BseMI	GCAATG	2 cut(s)	372, 1285
BseMII	CTCAG	4 cut(s)	162, 1086, 1296, 1533
BseRI	GAGGAG	4 cut(s)	554, 1187, 1357, 1559
BseSI	GKGCMC	1 cut(s)	939
BseXI	GCAGC	9 cut(s)	436, 532, 535, 901, 934, 1036, 1298, 1300, 1361
BseYI	CCCAGC	1 cut(s)	77
BsgI	GTGCAG	1 cut(s)	1305
BshFI	GGCC	3 cut(s)	302, 337, 620
BshTI	ACCGGT	1 cut(s)	680
BsiHKAI	GWGCWC	1 cut(s)	939
BsiSI	CCGG	2 cut(s)	274, 681
BslI	CCNNNNNNNGG	3 cut(s)	156, 786, 1327
BsmAI	GTCTC	2 cut(s)	1139, 1355
BsmI	GAATGC	1 cut(s)	1051
BsnI	GGCC	3 cut(s)	302, 337, 620
Bso31I	GGTCTC	1 cut(s)	1355
Bsp1286I	GDGCHC	1 cut(s)	939
Bsp143I	GATC	8 cut(s)	37, 117, 211, 396, 775, 802, 1225, 1585
BspACI	CCGC	4 cut(s)	134, 150, 962, 1342
BspANI	GGCC	3 cut(s)	302, 337, 620
BspCNI	CTCAG	4 cut(s)	163, 1087, 1297, 1534
BspHI	TCATGA	1 cut(s)	1579
BspLI	GGNNCC	1 cut(s)	301
BspOI	GCTAGC	1 cut(s)	86
BspPI	GGATC	6 cut(s)	45, 206, 770, 797, 1233, 1580
BspTI	CTTAAG	1 cut(s)	1457
BspTNI	GGTCTC	1 cut(s)	1355
BsrBI	CCGCTC	1 cut(s)	152
BsrDI	GCAATG	2 cut(s)	372, 1285
BsrFI	RCCGGY	1 cut(s)	680
BssAI	RCCGGY	1 cut(s)	680
BssECI	CCNNGG	2 cut(s)	155, 621
BssMI	GATC	8 cut(s)	37, 117, 211, 396, 775, 802, 1225, 1585
BssNI	GRCGYC	1 cut(s)	11
BssSI	CACGAG	1 cut(s)	462
BssT1I	CCWWGG	2 cut(s)	155, 621
Bst2BI	CACGAG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	5 cut(s)	296, 703, 1057, 1118, 1271
Bst6I	CTCTTC	5 cut(s)	813, 1120, 1353, 1374, 1479
BstACI	GRCGYC	1 cut(s)	11
BstAFI	CTTAAG	1 cut(s)	1457
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstBAI	YACGTR	1 cut(s)	71
BstC8I	GCNNGC	6 cut(s)	84, 368, 873, 945, 1253, 1392
BstDEI	CTNAG	5 cut(s)	171, 1071, 1095, 1305, 1542
BstENI	CCTNNNNNAGG	1 cut(s)	1325
BstF5I	GGATG	6 cut(s)	146, 496, 1148, 1183, 1474, 1498
BstHHI	GCGC	1 cut(s)	1608
BstKTI	GATC	8 cut(s)	40, 120, 214, 399, 778, 805, 1228, 1588
BstMAI	GTCTC	2 cut(s)	1139, 1355
BstMBI	GATC	8 cut(s)	37, 117, 211, 396, 775, 802, 1225, 1585
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 74, 83, 458, 911
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	2 cut(s)	370, 943
BstSCI	CCNGG	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	1056
BstSLI	GKGCMC	1 cut(s)	939
BstV1I	GCAGC	9 cut(s)	436, 532, 535, 901, 934, 1036, 1298, 1300, 1361
BstV2I	GAAGAC	1 cut(s)	1425
BstX2I	RGATCY	3 cut(s)	211, 396, 802
BstYI	RGATCY	3 cut(s)	211, 396, 802
Bsu36I	CCTNAGG	2 cut(s)	1071, 1542
BsuRI	GGCC	3 cut(s)	302, 337, 620
BtrI	CACGTC	1 cut(s)	934
BtsCI	GGATG	6 cut(s)	146, 496, 1148, 1183, 1474, 1498
BtsIMutI	CAGTG	2 cut(s)	21, 583
Cac8I	GCNNGC	6 cut(s)	84, 368, 873, 945, 1253, 1392
CaiI	CAGNNNCTG	3 cut(s)	526, 701, 1355
CciI	TCATGA	1 cut(s)	1579
CfoI	GCGC	1 cut(s)	1608
Cfr10I	RCCGGY	1 cut(s)	680
Cfr13I	GGNCC	2 cut(s)	300, 789
Csp6I	GTAC	3 cut(s)	271, 508, 1574
CspAI	ACCGGT	1 cut(s)	680
CviQI	GTAC	3 cut(s)	271, 508, 1574
DdeI	CTNAG	5 cut(s)	171, 1071, 1095, 1305, 1542
DpnI	GATC	8 cut(s)	39, 119, 213, 398, 777, 804, 1227, 1587
DpnII	GATC	8 cut(s)	37, 117, 211, 396, 775, 802, 1225, 1585
DraI	TTTAAA	1 cut(s)	747
Eam1104I	CTCTTC	5 cut(s)	813, 1120, 1353, 1374, 1479
EarI	CTCTTC	5 cut(s)	813, 1120, 1353, 1374, 1479
Eco130I	CCWWGG	2 cut(s)	155, 621
Eco147I	AGGCCT	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	1355
Eco47I	GGWCC	1 cut(s)	789
Eco57I	CTGAAG	4 cut(s)	114, 626, 1377, 1437
Eco81I	CCTNAGG	2 cut(s)	1071, 1542
EcoNI	CCTNNNNNAGG	1 cut(s)	1325
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	2 cut(s)	155, 621
EcoT22I	ATGCAT	1 cut(s)	907
ErhI	CCWWGG	2 cut(s)	155, 621
FalI	AAGNNNNNCTT	4 cut(s)	167, 199, 792, 824
Fnu4HI	GCNGC	9 cut(s)	450, 521, 524, 890, 948, 1050, 1287, 1314, 1350
FokI	GGATG	6 cut(s)	133, 503, 1135, 1190, 1481, 1505
Fsp4HI	GCNGC	9 cut(s)	450, 521, 524, 890, 948, 1050, 1287, 1314, 1350
FspBI	CTAG	5 cut(s)	83, 339, 363, 498, 1609
GlaI	GCGC	1 cut(s)	1607
GluI	GCNGC	9 cut(s)	450, 521, 524, 890, 948, 1050, 1287, 1314, 1350
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	3 cut(s)	302, 337, 620
HapII	CCGG	2 cut(s)	274, 681
HhaI	GCGC	1 cut(s)	1608
Hin1I	GRCGYC	1 cut(s)	11
Hin6I	GCGC	1 cut(s)	1606
HinP1I	GCGC	1 cut(s)	1606
HincII	GTYRAC	1 cut(s)	760
HindII	GTYRAC	1 cut(s)	760
HindIII	AAGCTT	1 cut(s)	873
HinfI	GANTC	1 cut(s)	1307
HpaII	CCGG	2 cut(s)	274, 681
HphI	GGTGA	2 cut(s)	1220, 1460
Hpy166II	GTNNAC	3 cut(s)	760, 937, 1183
Hpy188I	TCNGA	7 cut(s)	211, 606, 707, 1266, 1306, 1357, 1590
Hpy188III	TCNNGA	4 cut(s)	722, 812, 1541, 1580
Hpy8I	GTNNAC	3 cut(s)	760, 937, 1183
HpyAV	CCTTC	8 cut(s)	495, 601, 1216, 1321, 1456, 1470, 1474, 1483
HpyCH4III	ACNGT	5 cut(s)	296, 703, 1057, 1118, 1271
HpyCH4IV	ACGT	2 cut(s)	70, 933
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 74, 83, 458, 911
HpyF3I	CTNAG	5 cut(s)	171, 1071, 1095, 1305, 1542
HpySE526I	ACGT	2 cut(s)	70, 933
Hsp92I	GRCGYC	1 cut(s)	11
HspAI	GCGC	1 cut(s)	1606
Kzo9I	GATC	8 cut(s)	37, 117, 211, 396, 775, 802, 1225, 1585
LmnI	GCTCC	7 cut(s)	157, 281, 350, 955, 1075, 1403, 1426
Lsp1109I	GCAGC	9 cut(s)	436, 532, 535, 901, 934, 1036, 1298, 1300, 1361
LweI	GCATC	6 cut(s)	436, 589, 805, 1012, 1310, 1441
MaeI	CTAG	5 cut(s)	83, 339, 363, 498, 1609
MaeII	ACGT	2 cut(s)	70, 933
MaeIII	GTNAC	2 cut(s)	1516, 1534
MalI	GATC	8 cut(s)	39, 119, 213, 398, 777, 804, 1227, 1587
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	8 cut(s)	37, 117, 211, 396, 775, 802, 1225, 1585
MflI	RGATCY	3 cut(s)	211, 396, 802
MhlI	GDGCHC	1 cut(s)	939
MluCI	AATT	7 cut(s)	51, 56, 217, 709, 965, 1260, 1293
MlyI	GAGTC	1 cut(s)	1316
MmeI	TCCRAC	1 cut(s)	1397
Mph1103I	ATGCAT	1 cut(s)	907
MroXI	GAANNNNTTC	1 cut(s)	1065
MseI	TTAA	5 cut(s)	165, 746, 975, 993, 1458
MslI	CAYNNNNRTG	2 cut(s)	1200, 1581
MspA1I	CMGCKG	4 cut(s)	92, 526, 1289, 1313
MspCI	CTTAAG	1 cut(s)	1457
MspI	CCGG	2 cut(s)	274, 681
MspR9I	CCNGG	1 cut(s)	232
Mva1269I	GAATGC	1 cut(s)	1051
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	5 cut(s)	17, 74, 83, 458, 911
NdeII	GATC	8 cut(s)	37, 117, 211, 396, 775, 802, 1225, 1585
NheI	GCTAGC	1 cut(s)	82
NlaIV	GGNNCC	1 cut(s)	301
NmeAIII	GCCGAG	1 cut(s)	204
NsiI	ATGCAT	1 cut(s)	907
NspI	RCATGY	2 cut(s)	370, 943
OliI	CACNNNNGTG	1 cut(s)	1200
PaeI	GCATGC	1 cut(s)	370
PagI	TCATGA	1 cut(s)	1579
PceI	AGGCCT	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	793
PctI	GAATGC	1 cut(s)	1051
PdmI	GAANNNNTTC	1 cut(s)	1065
PinAI	ACCGGT	1 cut(s)	680
PkrI	GCNGC	9 cut(s)	451, 522, 525, 891, 949, 1051, 1288, 1315, 1351
PleI	GAGTC	1 cut(s)	1315
PpsI	GAGTC	1 cut(s)	1315
Ppu21I	YACGTR	1 cut(s)	71
PsiI	TTATAA	1 cut(s)	1133
Psp6I	CCWGG	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	2 cut(s)	300, 789
PstNI	CAGNNNCTG	3 cut(s)	526, 701, 1355
PsuI	RGATCY	3 cut(s)	211, 396, 802
PvuII	CAGCTG	4 cut(s)	92, 526, 1289, 1313
RsaI	GTAC	3 cut(s)	272, 509, 1575
RsaNI	GTAC	3 cut(s)	271, 508, 1574
RseI	CAYNNNNRTG	2 cut(s)	1200, 1581
SaqAI	TTAA	5 cut(s)	165, 746, 975, 993, 1458
SatI	GCNGC	9 cut(s)	450, 521, 524, 890, 948, 1050, 1287, 1314, 1350
Sau3AI	GATC	8 cut(s)	37, 117, 211, 396, 775, 802, 1225, 1585
Sau96I	GGNCC	2 cut(s)	300, 789
SchI	GAGTC	1 cut(s)	1316
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	939
SfaNI	GCATC	6 cut(s)	436, 589, 805, 1012, 1310, 1441
SfcI	CTRYAG	1 cut(s)	1056
SinI	GGWCC	1 cut(s)	789
SmiMI	CAYNNNNRTG	2 cut(s)	1200, 1581
SmlI	CTYRAG	2 cut(s)	957, 1457
SmoI	CTYRAG	2 cut(s)	957, 1457
SphI	GCATGC	1 cut(s)	370
Sse9I	AATT	7 cut(s)	51, 56, 217, 709, 965, 1260, 1293
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	4 cut(s)	134, 150, 962, 1342
SspI	AATATT	3 cut(s)	255, 898, 1336
SspMI	CTAG	5 cut(s)	83, 339, 363, 498, 1609
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	2 cut(s)	155, 621
TaaI	ACNGT	5 cut(s)	296, 703, 1057, 1118, 1271
TaiI	ACGT	2 cut(s)	73, 936
TaqI	TCGA	5 cut(s)	29, 43, 402, 612, 1561
TaqII	GACCGA	1 cut(s)	777
TasI	AATT	7 cut(s)	51, 56, 217, 709, 965, 1260, 1293
Tru1I	TTAA	5 cut(s)	165, 746, 975, 993, 1458
Tru9I	TTAA	5 cut(s)	165, 746, 975, 993, 1458
TscAI	CASTG	2 cut(s)	21, 583
TseI	GCWGC	9 cut(s)	449, 520, 523, 889, 947, 1049, 1286, 1313, 1349
TspRI	CASTG	2 cut(s)	21, 583
Vha464I	CTTAAG	1 cut(s)	1457
VneI	GTGCAC	1 cut(s)	935
VpaK11BI	GGWCC	1 cut(s)	789
XagI	CCTNNNNNAGG	1 cut(s)	1325
XapI	RAATTY	1 cut(s)	709
XceI	RCATGY	2 cut(s)	370, 943
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1442
XmnI	GAANNNNTTC	1 cut(s)	1065
XspI	CTAG	5 cut(s)	83, 339, 363, 498, 1609
Zsp2I	ATGCAT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.