RchiOBHm_Chr4g0409541

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
32971425 .. 32974726
3302 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38053

Sequence Viewer

Length: 225 bp
ATGACAGTATGGTTTATGTCAAAAGGTATGGTAACTTTCTGTTCTATAGTTGTTCTAAGCTATAGTTCTCCTTCTGTGACAGGGTCTGTGATGCTTTGGTTAATCCTCTATTTAGGTCCCTCTAAGTTTTTGAAACTTGGTAGTGATTTGGAGTCTTGGAACATTTGCACACTCAATTTTCAGCAGATAAATGATGATTATAGTCATGGTTTGCTGCTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.32

Weight (kDa)

5.41

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 133
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
AlwNI CAGNNNCTG 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 116
AvaII GGWCC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 201
BfmI CTRYAG 2 cut(s) 45, 61
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 118
BmsI GCATC 1 cut(s) 81
BseXI GCAGC 1 cut(s) 201
BslFI GGGAC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 56, 123
BstSFI CTRYAG 2 cut(s) 45, 61
BstV1I GCAGC 1 cut(s) 201
CaiI CAGNNNCTG 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 116
CviAII CATG 2 cut(s) 206, 222
CviJI RGCY 1 cut(s) 60
CviKI_1 RGCY 1 cut(s) 60
DdeI CTNAG 2 cut(s) 56, 123
Eco47I GGWCC 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 116
FaeI CATG 2 cut(s) 209, 225
FaiI YATR 8 cut(s) 10, 17, 29, 47, 63, 201, 207, 223
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 205, 221
Fnu4HI GCNGC 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 215
GluI GCNGC 1 cut(s) 215
Hin1II CATG 2 cut(s) 209, 225
HinfI GANTC 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 1 cut(s) 168
HpyF3I CTNAG 2 cut(s) 56, 123
Hsp92II CATG 2 cut(s) 209, 225
LpnPI CCDG 1 cut(s) 66
Lsp1109I GCAGC 1 cut(s) 201
LweI GCATC 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 31, 76
MluCI AATT 1 cut(s) 175
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 2 cut(s) 116, 130
MseI TTAA 1 cut(s) 101
NlaIII CATG 2 cut(s) 209, 225
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 76
PflFI GACNNNGTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 216
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
PpuMI RGGWCCY 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 116
PspPPI RGGWCCY 1 cut(s) 116
PstNI CAGNNNCTG 1 cut(s) 86
PsyI GACNNNGTC 1 cut(s) 82
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 1 cut(s) 215
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 161
SetI ASST 3 cut(s) 28, 62, 118
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 2 cut(s) 45, 61
SgeI CNNG 4 cut(s) 93, 149, 168, 218
SinI GGWCC 1 cut(s) 116
Sse9I AATT 1 cut(s) 175
TaaI ACNGT 1 cut(s) 7
TasI AATT 1 cut(s) 175
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 76
Tth111I GACNNNGTC 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.