Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001141.1

Orthogroup ID

OG0003962

Physical Location & Seq

Genomic Coordinates Reverse (-)

33384 .. 34175

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001141.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgggccatgttcattgtaccgccaaaggtactaattccaaccaaatgaatgacatacagacacaccgccatacgggctacaacctcagcatcggactacctccagatgccaccaacgcgccgccacgcgccgcgccaagagggcatcagaggcttctgaaactgggaactgaagcatatcagtcccacatcgaaaaaaaagacgagatcagtctcttcctcacctataaaaggcggagctccccgccattccccaaccctccgaccacgcgatcggcgttaaccgctcgctcactattcacaaccccggccaaccccggcggtgaggcaaatccaggcagcagccgcccgtcaggccaggatctcgtcaccatgtacgagatggcactagcggatcttcataaggcaaacatagagcgtgaggaggagcgcaaggagaaggccgaagcccaaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.75

Weight (kDa)

9.33

Isoelectric Point (pI)

65.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318821 RchiOBHm_Chr1g0318831 RchiOBHm_Chr1g0346331 RchiOBHm_Chr4g0409541 RchiOBHm_Chr5g0051691 RchiOBHm_Chr7g0235061 RchiOBHm_Chr7g0235071
rosa_multiflora	Rmu_co8511089.1_g000002 Rmu_sc0001141.1_g000012 Rmu_sc0007791.1_g000003 Rmu_sc0009346.1_g000011 Rmu_sc0014538.1_g000001 Rmu_ssc0000368.1_g000052
rosa_roxburghii	Rroxscaffold_1G00017540 Rroxscaffold_5G00346710 Rroxscaffold_5G00350080 Rroxscaffold_5G00363030
rosa_rugosa	Rorug01G0067000 Rorug01G0211600 Rorug02G0440000 Rorug02G0478600 Rorug03G0012700 Rorug04G0064400 Rorug04G0083800 Rorug05G0214100 Rorug06G0052700 Rorug07G0206200 Rorug07G0268600 Rorug07G0313000
rosa_samantha	Rh4CG156700 Rh5BG128100 Rh5BG361200 Rh7BG438500 Rh7CG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	287
AccII	CGCG	4 cut(s)	119, 129, 134, 271
AclWI	GGATC	2 cut(s)	369, 402
AcoI	YGGCCR	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	3 cut(s)	19, 31, 377
AfiI	CCNNNNNNNGG	2 cut(s)	73, 231
AjnI	CCWGG	2 cut(s)	334, 357
AluBI	AGCT	1 cut(s)	240
AluI	AGCT	1 cut(s)	240
Alw21I	GWGCWC	1 cut(s)	242
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	2 cut(s)	369, 402
AoxI	GGCC	4 cut(s)	4, 309, 355, 441
ApeKI	GCWGC	2 cut(s)	339, 342
AspLEI	GCGC	4 cut(s)	121, 131, 136, 432
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	308, 318
AsuHPI	GGTGA	3 cut(s)	214, 335, 361
BanII	GRGCYC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	242
BbvCI	CCTCAGC	1 cut(s)	86
BbvI	GCAGC	2 cut(s)	351, 354
BccI	CCATC	1 cut(s)	376
BciT130I	CCWGG	2 cut(s)	336, 359
BcnI	CCSGG	2 cut(s)	308, 318
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	389
BglI	GCCNNNNNGGC	3 cut(s)	75, 142, 354
BisI	GCNGC	5 cut(s)	122, 132, 340, 343, 346
BlsI	GCNGC	5 cut(s)	123, 133, 341, 344, 347
Bme1390I	CCNGG	4 cut(s)	308, 318, 336, 359
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	4 cut(s)	308, 318, 336, 359
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	3 cut(s)	97, 99, 154
BmuI	ACTGGG	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	86
BpuMI	CCSGG	2 cut(s)	308, 318
BsaJI	CCNNGG	2 cut(s)	306, 316
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 231
Bse1I	ACTGG	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	336, 359
BseDI	CCNNGG	2 cut(s)	306, 316
BseLI	CCNNNNNNNGG	2 cut(s)	73, 231
BseMII	CTCAG	1 cut(s)	100
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	2 cut(s)	437, 440
BseXI	GCAGC	2 cut(s)	351, 354
Bsh1236I	CGCG	4 cut(s)	119, 129, 134, 271
Bsh1285I	CGRYCG	1 cut(s)	275
BshFI	GGCC	4 cut(s)	6, 311, 357, 443
BsiEI	CGRYCG	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	242
BsiSI	CCGG	2 cut(s)	308, 318
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	2 cut(s)	73, 231
BsmAI	GTCTC	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	4 cut(s)	6, 311, 357, 443
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	4 cut(s)	207, 272, 361, 394
BspANI	GGCC	4 cut(s)	6, 311, 357, 443
BspCNI	CTCAG	1 cut(s)	99
BspFNI	CGCG	4 cut(s)	119, 129, 134, 271
BspPI	GGATC	2 cut(s)	369, 402
BsrBI	CCGCTC	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	306, 316
BssMI	GATC	4 cut(s)	207, 272, 361, 394
Bst2UI	CCWGG	2 cut(s)	336, 359
Bst6I	CTCTTC	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	86
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstFNI	CGCG	4 cut(s)	119, 129, 134, 271
BstHHI	GCGC	4 cut(s)	121, 131, 136, 432
BstKTI	GATC	4 cut(s)	210, 275, 364, 397
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	4 cut(s)	207, 272, 361, 394
BstMCI	CGRYCG	1 cut(s)	275
BstMWI	GCNNNNNNNGC	7 cut(s)	75, 116, 142, 151, 284, 345, 354
BstNI	CCWGG	2 cut(s)	336, 359
BstSCI	CCNGG	4 cut(s)	306, 316, 334, 357
BstUI	CGCG	4 cut(s)	119, 129, 134, 271
BstV1I	GCAGC	2 cut(s)	351, 354
BstX2I	RGATCY	2 cut(s)	361, 394
BstYI	RGATCY	2 cut(s)	361, 394
BsuRI	GGCC	4 cut(s)	6, 311, 357, 443
Cac8I	GCNNGC	1 cut(s)	289
CfoI	GCGC	4 cut(s)	121, 131, 136, 432
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	3 cut(s)	18, 30, 376
CviAII	CATG	2 cut(s)	8, 373
CviJI	RGCY	9 cut(s)	6, 78, 154, 240, 311, 345, 357, 443, 449
CviKI_1	RGCY	9 cut(s)	6, 78, 154, 240, 311, 345, 357, 443, 449
CviQI	GTAC	3 cut(s)	18, 30, 376
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	4 cut(s)	209, 274, 363, 396
DpnII	GATC	4 cut(s)	207, 272, 361, 394
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
EciI	GGCGGA	1 cut(s)	250
Ecl136II	GAGCTC	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	240
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	334, 357
EcoT38I	GRGCYC	1 cut(s)	242
FaeI	CATG	2 cut(s)	11, 376
FaiI	YATR	8 cut(s)	9, 56, 72, 178, 228, 374, 402, 413
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	2 cut(s)	7, 372
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	5 cut(s)	122, 132, 340, 343, 346
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	5 cut(s)	122, 132, 340, 343, 346
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	4 cut(s)	120, 130, 135, 431
GluI	GCNGC	5 cut(s)	122, 132, 340, 343, 346
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	4 cut(s)	6, 311, 357, 443
HapII	CCGG	2 cut(s)	308, 318
HhaI	GCGC	4 cut(s)	121, 131, 136, 432
Hin1II	CATG	2 cut(s)	11, 376
Hin6I	GCGC	4 cut(s)	119, 129, 134, 430
HinP1I	GCGC	4 cut(s)	119, 129, 134, 430
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HpaI	GTTAAC	1 cut(s)	282
HpaII	CCGG	2 cut(s)	308, 318
HphI	GGTGA	3 cut(s)	214, 335, 361
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	4 cut(s)	95, 150, 159, 264
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	282
HpyAV	CCTTC	1 cut(s)	433
HpyF10VI	GCNNNNNNNGC	7 cut(s)	75, 116, 142, 151, 284, 345, 354
HpyF3I	CTNAG	1 cut(s)	86
Hsp92II	CATG	2 cut(s)	11, 376
HspAI	GCGC	4 cut(s)	119, 129, 134, 430
KspAI	GTTAAC	1 cut(s)	282
Kzo9I	GATC	4 cut(s)	207, 272, 361, 394
LmnI	GCTCC	3 cut(s)	237, 245, 427
LpnPI	CCDG	9 cut(s)	117, 149, 321, 321, 331, 339, 344, 348, 371
Lsp1109I	GCAGC	2 cut(s)	351, 354
LweI	GCATC	3 cut(s)	97, 99, 154
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	4 cut(s)	209, 274, 363, 396
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	4 cut(s)	207, 272, 361, 394
MboII	GAAGA	2 cut(s)	208, 389
MflI	RGATCY	2 cut(s)	361, 394
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	1 cut(s)	34
MmeI	TCCRAC	2 cut(s)	63, 287
MnlI	CCTC	9 cut(s)	95, 111, 134, 144, 230, 270, 319, 415, 418
MseI	TTAA	1 cut(s)	281
MspI	CCGG	2 cut(s)	308, 318
MspR9I	CCNGG	4 cut(s)	308, 318, 336, 359
MteI	GCGCNGCGC	1 cut(s)	132
MvaI	CCWGG	2 cut(s)	336, 359
MvnI	CGCG	4 cut(s)	119, 129, 134, 271
MwoI	GCNNNNNNNGC	7 cut(s)	75, 116, 142, 151, 284, 345, 354
NciI	CCSGG	2 cut(s)	308, 318
NdeII	GATC	4 cut(s)	207, 272, 361, 394
NlaIII	CATG	2 cut(s)	11, 376
NmuCI	GTSAC	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	275
PkrI	GCNGC	5 cut(s)	123, 133, 341, 344, 347
Ple19I	CGATCG	1 cut(s)	275
Psp124BI	GAGCTC	1 cut(s)	242
Psp6I	CCWGG	2 cut(s)	334, 357
PspGI	CCWGG	2 cut(s)	334, 357
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	361, 394
PvuI	CGATCG	1 cut(s)	275
RsaI	GTAC	3 cut(s)	19, 31, 377
RsaNI	GTAC	3 cut(s)	18, 30, 376
SacI	GAGCTC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	5 cut(s)	122, 132, 340, 343, 346
Sau3AI	GATC	4 cut(s)	207, 272, 361, 394
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	4 cut(s)	308, 318, 336, 359
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	5 cut(s)	31, 87, 103, 227, 242
SfaNI	GCATC	3 cut(s)	97, 99, 154
Sse9I	AATT	1 cut(s)	34
SspMI	CTAG	1 cut(s)	389
SstI	GAGCTC	1 cut(s)	242
StyD4I	CCNGG	4 cut(s)	306, 316, 334, 357
TaqI	TCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	34
TauI	GCSGC	3 cut(s)	124, 134, 348
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	2 cut(s)	339, 342
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	2 cut(s)	62, 389
XagI	CCTNNNNNAGG	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.