Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003962

Physical Location & Seq

Genomic Coordinates Reverse (-)

7376623 .. 7377436

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0052700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGAATTGGTCCACCTGGCATTAGCATACTCAAAGAGATGAGACAATATATGAGAGTTATACAGTTGGACAGTTTCTCGGAGCTTGAGGAGAAAACAGTAGGAATTGACCGCACCACTTGGCTTGTAGAGGCCAATGATAAGAAGAAAAATAAACATCAGTTGAGCAAAGGTGATTATCTTGTGCACAAGTGTCTCGTATTGAAAATGCACAAGATTACTCCTCTTCTTGTGTTTGACACACTTGTGCCATTAGGAAAAGACAGGAACAAAGAATTCTGGAACAGGGAGATTCATTTTAATTATGTTGATAGAGCCGTACGTGAGTGTCTCAGTCGCAATGCAATCAAGCTTATCTGTGCCCCCTATGAGTCTGATGCAGAGTTAGCATACTTGATGGAGAAAAAGTACATTTATGCTGTCATGACAGGCGACTCAGATCTTATGGCTTATGGAGTTTCAAGAATAATATATATGATTGGGAGCCAGACAATAGTGATTGCTATTACTATGAATTTGAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

20.22

Weight (kDa)

9.02

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XPG_N	PF00752	9 - 89	3.4e-07	XPG N-terminal domain
XPG_I	PF00867	116 - 159	3.1e-10	XPG I-region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318821 RchiOBHm_Chr1g0318831 RchiOBHm_Chr1g0346331 RchiOBHm_Chr4g0409541 RchiOBHm_Chr5g0051691 RchiOBHm_Chr7g0235061 RchiOBHm_Chr7g0235071
rosa_multiflora	Rmu_co8511089.1_g000002 Rmu_sc0001141.1_g000012 Rmu_sc0007791.1_g000003 Rmu_sc0009346.1_g000011 Rmu_sc0014538.1_g000001 Rmu_ssc0000368.1_g000052
rosa_roxburghii	Rroxscaffold_1G00017540 Rroxscaffold_5G00346710 Rroxscaffold_5G00350080 Rroxscaffold_5G00363030
rosa_rugosa	Rorug01G0067000 Rorug01G0211600 Rorug02G0440000 Rorug02G0478600 Rorug03G0012700 Rorug04G0064400 Rorug04G0083800 Rorug05G0214100 Rorug06G0052700 Rorug07G0206200 Rorug07G0268600 Rorug07G0313000
rosa_samantha	Rh4CG156700 Rh5BG128100 Rh5BG361200 Rh7BG438500 Rh7CG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	112
AcsI	RAATTY	2 cut(s)	275, 514
AfaI	GTAC	2 cut(s)	321, 410
AgsI	TTSAA	3 cut(s)	205, 462, 520
AjnI	CCWGG	1 cut(s)	16
AleI	CACNNNNGTG	1 cut(s)	245
AluBI	AGCT	2 cut(s)	85, 352
AluI	AGCT	2 cut(s)	85, 352
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	3 cut(s)	37, 200, 335
Alw44I	GTGCAC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	132
ApaLI	GTGCAC	1 cut(s)	185
ApoI	RAATTY	2 cut(s)	275, 514
AspS9I	GGNCC	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	11
BaeGI	GKGCMC	2 cut(s)	189, 364
Bbv12I	GWGCWC	1 cut(s)	189
BccI	CCATC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	18
BcoDI	GTCTC	3 cut(s)	37, 200, 335
BglII	AGATCT	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	18
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	2 cut(s)	346, 450
BseRI	GAGGAG	2 cut(s)	104, 213
BseSI	GKGCMC	2 cut(s)	189, 364
BshFI	GGCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	189
BsiWI	CGTACG	1 cut(s)	319
BsmAI	GTCTC	3 cut(s)	37, 200, 335
BsnI	GGCC	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	189, 364
Bsp143I	GATC	1 cut(s)	439
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	2 cut(s)	345, 449
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	346
BssMI	GATC	1 cut(s)	439
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	3 cut(s)	66, 74, 100
Bst6I	CTCTTC	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	323
BstDEI	CTNAG	2 cut(s)	332, 436
BstKTI	GATC	1 cut(s)	442
BstMAI	GTCTC	3 cut(s)	37, 200, 335
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstSLI	GKGCMC	2 cut(s)	189, 364
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuRI	GGCC	1 cut(s)	134
CciI	TCATGA	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	320, 409
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviAII	CATG	1 cut(s)	424
CviJI	RGCY	7 cut(s)	85, 124, 134, 317, 352, 449, 486
CviKI_1	RGCY	7 cut(s)	85, 124, 134, 317, 352, 449, 486
CviQI	GTAC	2 cut(s)	320, 409
DdeI	CTNAG	2 cut(s)	332, 436
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	11
EcoRI	GAATTC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	16
FaeI	CATG	1 cut(s)	427
FatI	CATG	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	134
Hin1II	CATG	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	3 cut(s)	292, 371, 434
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	14, 187
Hpy188I	TCNGA	3 cut(s)	82, 376, 439
Hpy188III	TCNNGA	3 cut(s)	280, 424, 462
Hpy8I	GTNNAC	2 cut(s)	14, 187
HpyCH4III	ACNGT	3 cut(s)	66, 74, 100
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	4 cut(s)	187, 211, 344, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	2 cut(s)	332, 436
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	1 cut(s)	427
Kzo9I	GATC	1 cut(s)	439
LmnI	GCTCC	2 cut(s)	82, 483
LpnPI	CCDG	7 cut(s)	3, 30, 250, 265, 271, 414, 500
LweI	GCATC	1 cut(s)	367
MaeII	ACGT	1 cut(s)	322
MalI	GATC	1 cut(s)	441
MboI	GATC	1 cut(s)	439
MboII	GAAGA	2 cut(s)	157, 218
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	2 cut(s)	189, 364
MluCI	AATT	5 cut(s)	6, 105, 275, 301, 514
MlyI	GAGTC	2 cut(s)	380, 428
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	3 cut(s)	82, 124, 234
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	386
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	1 cut(s)	427
NlaIV	GGNNCC	1 cut(s)	485
OliI	CACNNNNGTG	1 cut(s)	245
PagI	TCATGA	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	292
Pfl23II	CGTACG	1 cut(s)	319
PleI	GAGTC	2 cut(s)	379, 428
PpsI	GAGTC	2 cut(s)	379, 428
Ppu21I	YACGTR	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspLI	CGTACG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	2 cut(s)	321, 410
RsaNI	GTAC	2 cut(s)	320, 409
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	300
Sau3AI	GATC	1 cut(s)	439
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	2 cut(s)	380, 428
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	2 cut(s)	189, 364
SetI	ASST	5 cut(s)	19, 87, 175, 325, 354
SfaNI	GCATC	1 cut(s)	367
SinI	GGWCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	5 cut(s)	6, 105, 275, 301, 514
SsiI	CCGC	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	3 cut(s)	66, 74, 100
TaiI	ACGT	1 cut(s)	325
TasI	AATT	5 cut(s)	6, 105, 275, 301, 514
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TspDTI	ATGAA	2 cut(s)	284, 527
VneI	GTGCAC	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	2 cut(s)	275, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.