Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003962

Physical Location & Seq

Genomic Coordinates Reverse (-)

21601380 .. 21601801

Gene Structure 422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAGTCACGCTCATGCTACCGCCAACGGTGCGGACTCTAGCCAAATCGGTGACCTACGGGAGCACCGCCAAGCGGGCTACCGCTCGAGACTCGGCTTACTCCTAGATCGCCGCCCCAAGACAAGCATCGAAGCTCCGGATGCGGGGACCGAAACATATCGGTCCCACATCAAAAACATGAAGGAGATCGGCTCCTTCTTCACCTATAAAAGGCATCGGAGAAGAGAAGACCGCCCAATGCGGTATCCCTCGACGCCCTCTCGTATTTTACTTGACGGAGTAGCGGAAACTCGAGAATATCACAAGTATCGGTCCGCCCATCGGACCGGCATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.97

Weight (kDa)

10.35

Isoelectric Point (pI)

67.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318821 RchiOBHm_Chr1g0318831 RchiOBHm_Chr1g0346331 RchiOBHm_Chr4g0409541 RchiOBHm_Chr5g0051691 RchiOBHm_Chr7g0235061 RchiOBHm_Chr7g0235071
rosa_multiflora	Rmu_co8511089.1_g000002 Rmu_sc0001141.1_g000012 Rmu_sc0007791.1_g000003 Rmu_sc0009346.1_g000011 Rmu_sc0014538.1_g000001 Rmu_ssc0000368.1_g000052
rosa_roxburghii	Rroxscaffold_1G00017540 Rroxscaffold_5G00346710 Rroxscaffold_5G00350080 Rroxscaffold_5G00363030
rosa_rugosa	Rorug01G0067000 Rorug01G0211600 Rorug02G0440000 Rorug02G0478600 Rorug03G0012700 Rorug04G0064400 Rorug04G0083800 Rorug05G0214100 Rorug06G0052700 Rorug07G0206200 Rorug07G0268600 Rorug07G0313000
rosa_samantha	Rh4CG156700 Rh5BG128100 Rh5BG361200 Rh7BG438500 Rh7CG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	84
AccIII	TCCGGA	1 cut(s)	136
AcyI	GRCGYC	1 cut(s)	254
AfiI	CCNNNNNNNGG	4 cut(s)	73, 143, 210, 321
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	82
Ama87I	CYCGRG	2 cut(s)	85, 291
Aor13HI	TCCGGA	1 cut(s)	136
AspS9I	GGNCC	4 cut(s)	147, 162, 312, 324
AsuHPI	GGTGA	2 cut(s)	62, 193
AvaI	CYCGRG	2 cut(s)	85, 291
AvaII	GGWCC	4 cut(s)	147, 162, 312, 324
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	66
BccI	CCATC	1 cut(s)	327
BciVI	GTATCC	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	2 cut(s)	39, 104
BfuI	GTATCC	1 cut(s)	255
BglI	GCCNNNNNGGC	1 cut(s)	75
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
Bme18I	GGWCC	4 cut(s)	147, 162, 312, 324
BmeT110I	CYCGRG	2 cut(s)	85, 291
BmgT120I	GGNCC	4 cut(s)	147, 162, 312, 324
BmiI	GGNNCC	3 cut(s)	148, 164, 193
BmsI	GCATC	3 cut(s)	130, 135, 223
BpiI	GAAGAC	1 cut(s)	234
BplI	GAGNNNNNCTC	3 cut(s)	27, 176, 208
BsaHI	GRCGYC	1 cut(s)	254
BsaWI	WCCGGW	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 143, 210, 321
Bse118I	RCCGGY	1 cut(s)	326
BseAI	TCCGGA	1 cut(s)	136
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	4 cut(s)	73, 143, 210, 321
BsiHKAI	GWGCWC	1 cut(s)	66
BsiHKCI	CYCGRG	2 cut(s)	85, 291
BsiSI	CCGG	2 cut(s)	137, 327
BslFI	GGGAC	2 cut(s)	148, 160
BslI	CCNNNNNNNGG	4 cut(s)	73, 143, 210, 321
BsmAI	GTCTC	1 cut(s)	82
BsmFI	GGGAC	2 cut(s)	148, 160
BsoBI	CYCGRG	2 cut(s)	85, 291
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	106, 186
BspEI	TCCGGA	1 cut(s)	136
BspLI	GGNNCC	3 cut(s)	148, 164, 193
BsrBI	CCGCTC	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssMI	GATC	2 cut(s)	106, 186
BssNI	GRCGYC	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	217
BstACI	GRCGYC	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	76
BstEII	GGTNACC	1 cut(s)	50
BstENI	CCTNNNNNAGG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	2 cut(s)	109, 189
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	2 cut(s)	106, 186
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 75, 140
BstPI	GGTNACC	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	4 cut(s)	147, 162, 312, 324
CpoI	CGGWCCG	2 cut(s)	312, 324
CseI	GACGC	1 cut(s)	262
CspI	CGGWCCG	2 cut(s)	312, 324
CviAII	CATG	2 cut(s)	14, 178
CviJI	RGCY	5 cut(s)	42, 78, 96, 134, 192
CviKI_1	RGCY	5 cut(s)	42, 78, 96, 134, 192
DpnI	GATC	2 cut(s)	108, 188
DpnII	GATC	2 cut(s)	106, 186
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
EciI	GGCGGA	1 cut(s)	304
Eco47I	GGWCC	4 cut(s)	147, 162, 312, 324
Eco88I	CYCGRG	2 cut(s)	85, 291
Eco91I	GGTNACC	1 cut(s)	50
EcoNI	CCTNNNNNAGG	1 cut(s)	208
EcoO65I	GGTNACC	1 cut(s)	50
FaeI	CATG	2 cut(s)	17, 181
FaiI	YATR	4 cut(s)	15, 157, 179, 207
FaqI	GGGAC	2 cut(s)	148, 160
FatI	CATG	2 cut(s)	13, 177
FauI	CCCGC	2 cut(s)	67, 136
Fnu4HI	GCNGC	1 cut(s)	112
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	2 cut(s)	39, 104
GluI	GCNGC	1 cut(s)	112
HapII	CCGG	2 cut(s)	137, 327
HgaI	GACGC	1 cut(s)	262
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	2 cut(s)	17, 181
HinfI	GANTC	3 cut(s)	4, 35, 90
HpaII	CCGG	2 cut(s)	137, 327
HphI	GGTGA	2 cut(s)	62, 193
Hpy188I	TCNGA	2 cut(s)	219, 324
Hpy188III	TCNNGA	3 cut(s)	87, 137, 293
Hpy99I	CGWCG	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	175, 205
HpyCH4III	ACNGT	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 75, 140
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	17, 181
Kpn2I	TCCGGA	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	106, 186
LmnI	GCTCC	3 cut(s)	61, 139, 197
LpnPI	CCDG	1 cut(s)	150
LweI	GCATC	3 cut(s)	130, 135, 223
MaeI	CTAG	2 cut(s)	39, 104
MaeIII	GTNAC	2 cut(s)	5, 50
MalI	GATC	2 cut(s)	108, 188
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	2 cut(s)	106, 186
MboII	GAAGA	3 cut(s)	190, 234, 239
MhlI	GDGCHC	1 cut(s)	66
MlyI	GAGTC	3 cut(s)	13, 29, 84
MnlI	CCTC	2 cut(s)	259, 268
MroI	TCCGGA	1 cut(s)	136
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	2 cut(s)	137, 327
MwoI	GCNNNNNNNGC	3 cut(s)	29, 75, 140
NdeII	GATC	2 cut(s)	106, 186
NlaIII	CATG	2 cut(s)	17, 181
NlaIV	GGNNCC	3 cut(s)	148, 164, 193
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	2 cut(s)	5, 50
PaeR7I	CTCGAG	2 cut(s)	85, 291
PkrI	GCNGC	1 cut(s)	113
PleI	GAGTC	3 cut(s)	12, 29, 84
PpsI	GAGTC	3 cut(s)	12, 29, 84
PspEI	GGTNACC	1 cut(s)	50
PspN4I	GGNNCC	3 cut(s)	148, 164, 193
PspPI	GGNCC	4 cut(s)	147, 162, 312, 324
RseI	CAYNNNNRTG	1 cut(s)	12
Rsr2I	CGGWCCG	2 cut(s)	312, 324
RsrII	CGGWCCG	2 cut(s)	312, 324
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	2 cut(s)	106, 186
Sau96I	GGNCC	4 cut(s)	147, 162, 312, 324
SchI	GAGTC	3 cut(s)	13, 29, 84
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	3 cut(s)	57, 136, 206
SfaNI	GCATC	3 cut(s)	130, 135, 223
Sfr274I	CTCGAG	2 cut(s)	85, 291
SinI	GGWCC	4 cut(s)	147, 162, 312, 324
SlaI	CTCGAG	2 cut(s)	85, 291
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	2 cut(s)	85, 291
SmoI	CTYRAG	2 cut(s)	85, 291
SspMI	CTAG	2 cut(s)	39, 104
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	4 cut(s)	86, 129, 251, 292
TaqII	GACCGA	3 cut(s)	150, 164, 300
TauI	GCSGC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseFI	GTSAC	2 cut(s)	5, 50
Tsp45I	GTSAC	2 cut(s)	5, 50
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	1 cut(s)	291
VpaK11BI	GGWCC	4 cut(s)	147, 162, 312, 324
XagI	CCTNNNNNAGG	1 cut(s)	208
XhoI	CTCGAG	2 cut(s)	85, 291
XspI	CTAG	2 cut(s)	39, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.