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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 944, 1454 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 183 |
| AccBSI | CCGCTC | 1 cut(s) | 633 |
| AccII | CGCG | 1 cut(s) | 105 |
| AciI | CCGC | 4 cut(s) | 103, 219, 366, 631 |
| AclWI | GGATC | 4 cut(s) | 587, 825, 843, 1608 |
| AcsI | RAATTY | 5 cut(s) | 283, 518, 1514, 1727, 2070 |
| AcuI | CTGAAG | 4 cut(s) | 666, 1170, 1325, 1908 |
| AfaI | GTAC | 1 cut(s) | 1444 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 109, 183, 225, 596, 637, 692 |
| AflIII | ACRYGT | 1 cut(s) | 1709 |
| AhlI | ACTAGT | 1 cut(s) | 418 |
| AjnI | CCWGG | 4 cut(s) | 423, 458, 595, 1457 |
| AleI | CACNNNNGTG | 3 cut(s) | 345, 1049, 2024 |
| Alw21I | GWGCWC | 3 cut(s) | 888, 1271, 1793 |
| Alw26I | GTCTC | 1 cut(s) | 1749 |
| AlwI | GGATC | 4 cut(s) | 587, 825, 843, 1608 |
| AoxI | GGCC | 4 cut(s) | 349, 598, 1719, 2080 |
| ApeKI | GCWGC | 3 cut(s) | 737, 1958, 2014 |
| ApoI | RAATTY | 5 cut(s) | 283, 518, 1514, 1727, 2070 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 169, 626, 2064 |
| AspLEI | GCGC | 1 cut(s) | 784 |
| AspS9I | GGNCC | 4 cut(s) | 350, 599, 1285, 2080 |
| AsuHPI | GGTGA | 3 cut(s) | 332, 869, 1798 |
| AsuNHI | GCTAGC | 1 cut(s) | 1766 |
| AvaII | GGWCC | 1 cut(s) | 1285 |
| BaeGI | GKGCMC | 1 cut(s) | 1664 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1245, 1278 |
| BanI | GGYRCC | 2 cut(s) | 944, 1454 |
| BanII | GRGCYC | 2 cut(s) | 325, 888 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1004, 1036 |
| BbsI | GAAGAC | 3 cut(s) | 387, 985, 1871 |
| Bbv12I | GWGCWC | 3 cut(s) | 888, 1271, 1793 |
| BbvI | GCAGC | 3 cut(s) | 749, 1945, 2001 |
| BccI | CCATC | 1 cut(s) | 765 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1852, 1886 |
| BciT130I | CCWGG | 4 cut(s) | 425, 460, 597, 1459 |
| BclI | TGATCA | 1 cut(s) | 1384 |
| BcoDI | GTCTC | 1 cut(s) | 1749 |
| BcuI | ACTAGT | 1 cut(s) | 418 |
| BfmI | CTRYAG | 2 cut(s) | 1277, 1852 |
| BfoI | RGCGCY | 1 cut(s) | 785 |
| BglII | AGATCT | 1 cut(s) | 1080 |
| BisI | GCNGC | 3 cut(s) | 738, 1959, 2015 |
| BlpI | GCTNAGC | 1 cut(s) | 36 |
| BlsI | GCNGC | 3 cut(s) | 739, 1960, 2016 |
| Bme1390I | CCNGG | 4 cut(s) | 425, 460, 597, 1459 |
| Bme18I | GGWCC | 1 cut(s) | 1285 |
| BmgT120I | GGNCC | 4 cut(s) | 350, 599, 1285, 2080 |
| BmiI | GGNNCC | 5 cut(s) | 324, 601, 946, 1456, 1700 |
| BmrFI | CCNGG | 4 cut(s) | 425, 460, 597, 1459 |
| BmrI | ACTGGG | 1 cut(s) | 235 |
| BmsI | GCATC | 6 cut(s) | 268, 377, 742, 984, 1692, 1837 |
| BmtI | GCTAGC | 1 cut(s) | 1770 |
| BmuI | ACTGGG | 1 cut(s) | 235 |
| BpiI | GAAGAC | 3 cut(s) | 387, 985, 1871 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 617, 649, 2001, 2033 |
| BpmI | CTGGAG | 2 cut(s) | 1083, 1519 |
| Bpu10I | CCTNAGC | 1 cut(s) | 188 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 36 |
| BpuEI | CTTGAG | 2 cut(s) | 1406, 1802 |
| BsaBI | GATNNNNATC | 2 cut(s) | 756, 1356 |
| BsaJI | CCNNGG | 4 cut(s) | 343, 459, 1716, 1973 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 109, 183, 225, 596, 637, 692 |
| Bse1I | ACTGG | 1 cut(s) | 230 |
| Bse3DI | GCAATG | 1 cut(s) | 1868 |
| Bse8I | GATNNNNATC | 2 cut(s) | 756, 1356 |
| BseBI | CCWGG | 4 cut(s) | 425, 460, 597, 1459 |
| BseDI | CCNNGG | 4 cut(s) | 343, 459, 1716, 1973 |
| BseGI | GGATG | 5 cut(s) | 126, 798, 807, 1071, 1357 |
| BseJI | GATNNNNATC | 2 cut(s) | 756, 1356 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 109, 183, 225, 596, 637, 692 |
| BseMI | GCAATG | 1 cut(s) | 1868 |
| BseMII | CTCAG | 5 cut(s) | 65, 259, 533, 1122, 2011 |
| BseNI | ACTGG | 1 cut(s) | 230 |
| BseRI | GAGGAG | 1 cut(s) | 576 |
| BseSI | GKGCMC | 1 cut(s) | 1664 |
| BseXI | GCAGC | 3 cut(s) | 749, 1945, 2001 |
| Bsh1236I | CGCG | 1 cut(s) | 105 |
| BshFI | GGCC | 4 cut(s) | 351, 600, 1721, 2082 |
| BshNI | GGYRCC | 2 cut(s) | 944, 1454 |
| BsiHKAI | GWGCWC | 3 cut(s) | 888, 1271, 1793 |
| BsiSI | CCGG | 1 cut(s) | 1166 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 109, 183, 225, 596, 637, 692 |
| BsmAI | GTCTC | 1 cut(s) | 1749 |
| BsmI | GAATGC | 1 cut(s) | 138 |
| BsnI | GGCC | 4 cut(s) | 351, 600, 1721, 2082 |
| Bsp1286I | GDGCHC | 5 cut(s) | 325, 888, 1271, 1664, 1793 |
| Bsp143I | GATC | 8 cut(s) | 592, 793, 830, 848, 1080, 1384, 1519, 1600 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 36 |
| Bsp19I | CCATGG | 1 cut(s) | 1973 |
| BspACI | CCGC | 4 cut(s) | 103, 219, 366, 631 |
| BspANI | GGCC | 4 cut(s) | 351, 600, 1721, 2082 |
| BspCNI | CTCAG | 5 cut(s) | 66, 258, 534, 1121, 2010 |
| BspFNI | CGCG | 1 cut(s) | 105 |
| BspHI | TCATGA | 1 cut(s) | 1483 |
| BspLI | GGNNCC | 5 cut(s) | 324, 601, 946, 1456, 1700 |
| BspMAI | CTGCAG | 2 cut(s) | 1281, 1856 |
| BspOI | GCTAGC | 1 cut(s) | 1770 |
| BspPI | GGATC | 4 cut(s) | 587, 825, 843, 1608 |
| BspT107I | GGYRCC | 2 cut(s) | 944, 1454 |
| BsrBI | CCGCTC | 1 cut(s) | 633 |
| BsrDI | GCAATG | 1 cut(s) | 1868 |
| BsrI | ACTGG | 1 cut(s) | 230 |
| BssECI | CCNNGG | 4 cut(s) | 343, 459, 1716, 1973 |
| BssMI | GATC | 8 cut(s) | 592, 793, 830, 848, 1080, 1384, 1519, 1600 |
| BssT1I | CCWWGG | 1 cut(s) | 1973 |
| Bst2UI | CCWGG | 4 cut(s) | 425, 460, 597, 1459 |
| Bst4CI | ACNGT | 4 cut(s) | 112, 150, 857, 2064 |
| Bst6I | CTCTTC | 1 cut(s) | 1571 |
| BstC8I | GCNNGC | 8 cut(s) | 207, 508, 553, 1768, 1852, 1856, 1860, 1986 |
| BstDSI | CCRYGG | 1 cut(s) | 1973 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 594 |
| BstF5I | GGATG | 5 cut(s) | 126, 798, 807, 1071, 1357 |
| BstFNI | CGCG | 1 cut(s) | 105 |
| BstH2I | RGCGCY | 1 cut(s) | 785 |
| BstHHI | GCGC | 1 cut(s) | 784 |
| BstKTI | GATC | 8 cut(s) | 595, 796, 833, 851, 1083, 1387, 1522, 1603 |
| BstMAI | GTCTC | 1 cut(s) | 1749 |
| BstMBI | GATC | 8 cut(s) | 592, 793, 830, 848, 1080, 1384, 1519, 1600 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 320, 788, 1772, 1990 |
| BstNI | CCWGG | 4 cut(s) | 425, 460, 597, 1459 |
| BstNSI | RCATGY | 2 cut(s) | 1713, 1988 |
| BstSCI | CCNGG | 4 cut(s) | 423, 458, 595, 1457 |
| BstSFI | CTRYAG | 2 cut(s) | 1277, 1852 |
| BstSLI | GKGCMC | 1 cut(s) | 1664 |
| BstUI | CGCG | 1 cut(s) | 105 |
| BstV1I | GCAGC | 3 cut(s) | 749, 1945, 2001 |
| BstV2I | GAAGAC | 3 cut(s) | 387, 985, 1871 |
| BstX2I | RGATCY | 2 cut(s) | 848, 1080 |
| BstYI | RGATCY | 2 cut(s) | 848, 1080 |
| BsuRI | GGCC | 4 cut(s) | 351, 600, 1721, 2082 |
| BtgI | CCRYGG | 1 cut(s) | 1973 |
| BtsCI | GGATG | 5 cut(s) | 126, 798, 807, 1071, 1357 |
| BtsI | GCAGTG | 1 cut(s) | 562 |
| BtsIMutI | CAGTG | 2 cut(s) | 562, 1791 |
| Cac8I | GCNNGC | 8 cut(s) | 207, 508, 553, 1768, 1852, 1856, 1860, 1986 |
| CciI | TCATGA | 1 cut(s) | 1483 |
| CfoI | GCGC | 1 cut(s) | 784 |
| Cfr13I | GGNCC | 4 cut(s) | 350, 599, 1285, 2080 |
| Csp6I | GTAC | 1 cut(s) | 1443 |
| CviQI | GTAC | 1 cut(s) | 1443 |
| DpnI | GATC | 8 cut(s) | 594, 795, 832, 850, 1082, 1386, 1521, 1602 |
| DpnII | GATC | 8 cut(s) | 592, 793, 830, 848, 1080, 1384, 1519, 1600 |
| Eam1104I | CTCTTC | 1 cut(s) | 1571 |
| EarI | CTCTTC | 1 cut(s) | 1571 |
| Ecl136II | GAGCTC | 1 cut(s) | 886 |
| Eco130I | CCWWGG | 1 cut(s) | 1973 |
| Eco24I | GRGCYC | 2 cut(s) | 325, 888 |
| Eco32I | GATATC | 2 cut(s) | 817, 1218 |
| Eco47I | GGWCC | 1 cut(s) | 1285 |
| Eco53kI | GAGCTC | 1 cut(s) | 886 |
| Eco57I | CTGAAG | 4 cut(s) | 666, 1170, 1325, 1908 |
| EcoICRI | GAGCTC | 1 cut(s) | 886 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 594 |
| EcoO109I | RGGNCCY | 1 cut(s) | 599 |
| EcoRI | GAATTC | 3 cut(s) | 283, 1514, 1727 |
| EcoRII | CCWGG | 4 cut(s) | 423, 458, 595, 1457 |
| EcoRV | GATATC | 2 cut(s) | 817, 1218 |
| EcoT14I | CCWWGG | 1 cut(s) | 1973 |
| EcoT38I | GRGCYC | 2 cut(s) | 325, 888 |
| ErhI | CCWWGG | 1 cut(s) | 1973 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1764, 1796 |
| FbaI | TGATCA | 1 cut(s) | 1384 |
| Fnu4HI | GCNGC | 3 cut(s) | 738, 1959, 2015 |
| FokI | GGATG | 5 cut(s) | 113, 785, 794, 1058, 1364 |
| FriOI | GRGCYC | 2 cut(s) | 325, 888 |
| Fsp4HI | GCNGC | 3 cut(s) | 738, 1959, 2015 |
| GlaI | GCGC | 1 cut(s) | 783 |
| GluI | GCNGC | 3 cut(s) | 738, 1959, 2015 |
| GsuI | CTGGAG | 2 cut(s) | 1083, 1519 |
| HaeII | RGCGCY | 1 cut(s) | 785 |
| HaeIII | GGCC | 4 cut(s) | 351, 600, 1721, 2082 |
| HapII | CCGG | 1 cut(s) | 1166 |
| HhaI | GCGC | 1 cut(s) | 784 |
| Hin6I | GCGC | 1 cut(s) | 782 |
| HinP1I | GCGC | 1 cut(s) | 782 |
| HindIII | AAGCTT | 2 cut(s) | 861, 1017 |
| HinfI | GANTC | 6 cut(s) | 46, 572, 641, 891, 1462, 1978 |
| HpaII | CCGG | 1 cut(s) | 1166 |
| HphI | GGTGA | 3 cut(s) | 332, 869, 1798 |
| Hpy166II | GTNNAC | 1 cut(s) | 823 |
| Hpy188I | TCNGA | 9 cut(s) | 75, 543, 646, 890, 1111, 1570, 1633, 1688, 2000 |
| Hpy188III | TCNNGA | 7 cut(s) | 65, 590, 841, 1288, 1361, 1466, 1484 |
| Hpy8I | GTNNAC | 1 cut(s) | 823 |
| HpyAV | CCTTC | 4 cut(s) | 641, 844, 1276, 1538 |
| HpyCH4III | ACNGT | 4 cut(s) | 112, 150, 857, 2064 |
| HpyCH4IV | ACGT | 1 cut(s) | 1237 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 320, 788, 1772, 1990 |
| HpySE526I | ACGT | 1 cut(s) | 1237 |
| HspAI | GCGC | 1 cut(s) | 782 |
| Ksp22I | TGATCA | 1 cut(s) | 1384 |
| Kzo9I | GATC | 8 cut(s) | 592, 793, 830, 848, 1080, 1384, 1519, 1600 |
| LmnI | GCTCC | 5 cut(s) | 87, 328, 585, 1064, 1500 |
| Lsp1109I | GCAGC | 3 cut(s) | 749, 1945, 2001 |
| LweI | GCATC | 6 cut(s) | 268, 377, 742, 984, 1692, 1837 |
| MaeII | ACGT | 1 cut(s) | 1237 |
| MaeIII | GTNAC | 4 cut(s) | 7, 106, 467, 557 |
| MalI | GATC | 8 cut(s) | 594, 795, 832, 850, 1082, 1386, 1521, 1602 |
| MbiI | CCGCTC | 1 cut(s) | 633 |
| MboI | GATC | 8 cut(s) | 592, 793, 830, 848, 1080, 1384, 1519, 1600 |
| MfeI | CAATTG | 1 cut(s) | 1874 |
| MflI | RGATCY | 2 cut(s) | 848, 1080 |
| MhlI | GDGCHC | 5 cut(s) | 325, 888, 1271, 1664, 1793 |
| MlyI | GAGTC | 1 cut(s) | 581 |
| MroXI | GAANNNNTTC | 3 cut(s) | 169, 626, 2064 |
| MseI | TTAA | 3 cut(s) | 477, 1173, 1815 |
| MslI | CAYNNNNRTG | 5 cut(s) | 345, 494, 1049, 1452, 2024 |
| MspA1I | CMGCKG | 1 cut(s) | 1190 |
| MspI | CCGG | 1 cut(s) | 1166 |
| MspR9I | CCNGG | 4 cut(s) | 425, 460, 597, 1459 |
| MunI | CAATTG | 1 cut(s) | 1874 |
| Mva1269I | GAATGC | 1 cut(s) | 138 |
| MvaI | CCWGG | 4 cut(s) | 425, 460, 597, 1459 |
| MvnI | CGCG | 1 cut(s) | 105 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 320, 788, 1772, 1990 |
| NcoI | CCATGG | 1 cut(s) | 1973 |
| NdeII | GATC | 8 cut(s) | 592, 793, 830, 848, 1080, 1384, 1519, 1600 |
| NheI | GCTAGC | 1 cut(s) | 1766 |
| NlaIV | GGNNCC | 5 cut(s) | 324, 601, 946, 1456, 1700 |
| NmeAIII | GCCGAG | 2 cut(s) | 1741, 1969 |
| NmuCI | GTSAC | 1 cut(s) | 557 |
| NspI | RCATGY | 2 cut(s) | 1713, 1988 |
| OliI | CACNNNNGTG | 3 cut(s) | 345, 1049, 2024 |
| PaeI | GCATGC | 1 cut(s) | 1988 |
| PagI | TCATGA | 1 cut(s) | 1483 |
| PciI | ACATGT | 1 cut(s) | 1709 |
| PctI | GAATGC | 1 cut(s) | 138 |
| PdmI | GAANNNNTTC | 3 cut(s) | 169, 626, 2064 |
| PfeI | GAWTC | 5 cut(s) | 46, 641, 891, 1462, 1978 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 183 |
| PkrI | GCNGC | 3 cut(s) | 739, 1960, 2016 |
| PleI | GAGTC | 1 cut(s) | 580 |
| PpsI | GAGTC | 1 cut(s) | 580 |
| PscI | ACATGT | 1 cut(s) | 1709 |
| Psp124BI | GAGCTC | 1 cut(s) | 888 |
| Psp6I | CCWGG | 4 cut(s) | 423, 458, 595, 1457 |
| PspGI | CCWGG | 4 cut(s) | 423, 458, 595, 1457 |
| PspN4I | GGNNCC | 5 cut(s) | 324, 601, 946, 1456, 1700 |
| PspPI | GGNCC | 4 cut(s) | 350, 599, 1285, 2080 |
| PstI | CTGCAG | 2 cut(s) | 1281, 1856 |
| PsuI | RGATCY | 2 cut(s) | 848, 1080 |
| PvuII | CAGCTG | 1 cut(s) | 1190 |
| RsaI | GTAC | 1 cut(s) | 1444 |
| RsaNI | GTAC | 1 cut(s) | 1443 |
| RseI | CAYNNNNRTG | 5 cut(s) | 345, 494, 1049, 1452, 2024 |
| SacI | GAGCTC | 1 cut(s) | 888 |
| SaqAI | TTAA | 3 cut(s) | 477, 1173, 1815 |
| SatI | GCNGC | 3 cut(s) | 738, 1959, 2015 |
| Sau3AI | GATC | 8 cut(s) | 592, 793, 830, 848, 1080, 1384, 1519, 1600 |
| Sau96I | GGNCC | 4 cut(s) | 350, 599, 1285, 2080 |
| SbfI | CCTGCAGG | 1 cut(s) | 1856 |
| SchI | GAGTC | 1 cut(s) | 581 |
| ScrFI | CCNGG | 4 cut(s) | 425, 460, 597, 1459 |
| SdaI | CCTGCAGG | 1 cut(s) | 1856 |
| SduI | GDGCHC | 5 cut(s) | 325, 888, 1271, 1664, 1793 |
| SfaNI | GCATC | 6 cut(s) | 268, 377, 742, 984, 1692, 1837 |
| SfcI | CTRYAG | 2 cut(s) | 1277, 1852 |
| SinI | GGWCC | 1 cut(s) | 1285 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 345, 494, 1049, 1452, 2024 |
| SmlI | CTYRAG | 2 cut(s) | 1421, 1781 |
| SmoI | CTYRAG | 2 cut(s) | 1421, 1781 |
| SpeI | ACTAGT | 1 cut(s) | 418 |
| SphI | GCATGC | 1 cut(s) | 1988 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1856 |
| SsiI | CCGC | 4 cut(s) | 103, 219, 366, 631 |
| SspI | AATATT | 2 cut(s) | 81, 772 |
| SstI | GAGCTC | 1 cut(s) | 888 |
| StyD4I | CCNGG | 4 cut(s) | 423, 458, 595, 1457 |
| StyI | CCWWGG | 1 cut(s) | 1973 |
| TaaI | ACNGT | 4 cut(s) | 112, 150, 857, 2064 |
| TaiI | ACGT | 1 cut(s) | 1240 |
| TaqI | TCGA | 2 cut(s) | 266, 1518 |
| TatI | WGTACW | 1 cut(s) | 1442 |
| TfiI | GAWTC | 5 cut(s) | 46, 641, 891, 1462, 1978 |
| Tru1I | TTAA | 3 cut(s) | 477, 1173, 1815 |
| Tru9I | TTAA | 3 cut(s) | 477, 1173, 1815 |
| TscAI | CASTG | 2 cut(s) | 562, 1798 |
| TseFI | GTSAC | 1 cut(s) | 557 |
| TseI | GCWGC | 3 cut(s) | 737, 1958, 2014 |
| Tsp45I | GTSAC | 1 cut(s) | 557 |
| TspDTI | ATGAA | 2 cut(s) | 635, 1589 |
| TspRI | CASTG | 2 cut(s) | 562, 1798 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 183 |
| VpaK11BI | GGWCC | 1 cut(s) | 1285 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 594 |
| XapI | RAATTY | 5 cut(s) | 283, 518, 1514, 1727, 2070 |
| XceI | RCATGY | 2 cut(s) | 1713, 1988 |
| XmnI | GAANNNNTTC | 3 cut(s) | 169, 626, 2064 |