Rmu_sc0014538.1_g000001
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014538.1
OG0003962
Physical Location & Seq
Forward (+)
949 .. 4644
3696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014538.1_g000001.1.cds

Sequence Viewer

Length: 1287 bp
atgctcattgtaccgccaaaggtactaattccaaccaaaggaatgacatacggacacaccgccagacgggctacaacctcagcatcggaccacctccagatcgccaccaacgcgccgccacgcgccgcgccaagatggcatcagaagcttctgaagctgggaattgaagcatatcagtcccacatcgaaaacaaagacaagatcagtctcttcctcacctataaaaggttctctcctctctcctcattaatgacgcattcaatacttacctactgttactttgtcaacataaatacattgactaacttaggcatcggagagttgaagaccgcccagcgcggtctccctctgacgcccattgtattttacttgacaggtaacgagaactacaatactaacacaagtatcgatccgcccaccggatcagcgttaactaagagtttagatgagattagaagttgtcttctgcttctttttgcacaacctcatgaagtcttcctcgtcgttcatcagagttttcgagaaggggagggaggatgtggtgcagtaatccggcagatcaagatcccaacttcatcagattattggagattaacctgccttgaagcatcaaataaagatcgttgctgcacctgggcttcgaaagcaacatcttcctggccttttttcgattgcctcgactctctcatcggatctaacttcaagaagccctcgtcaccagtcactgttctgctaccgctggtttacctgaagccgtcaccagcaaggctggtcgtgaaggccgtggctctgccgcagaagaggtccgcgtccgcggcggcgatgaacgaggggttcttcaggatgacttactcggcggaagataacgacgaaggggatgaggaggcggaggtggagagggagagagagagagacaacgacgatgagattggaggcggcagaggagaagggttgaagagattggtgagggcaatagagaggtttggggaggtgtatcagagagtggaggctgagaagttgaggcagatggtggagttggaaaagcagataatgcagtttgctaaggacttggaggttcagagaatgaggatgttcatggacacaaaggccagagaattgagagtgaagtcggaggccgatcgattctggccttctgggtcgcccacgacgccggctctcgccatcgccgcgccaaaactcgtcgtcgtgatctccgcggccaggctcgacgccaagccaacggttctcatcgctgagaagctcggcgagattattggggggcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

428

Amino Acids

47.72

Weight (kDa)

8.81

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 605
AccII CGCG 8 cut(s) 113, 123, 128, 339, 809, 815, 1190, 1217
AclWI GGATC 4 cut(s) 404, 430, 559, 700
AcoI YGGCCR 1 cut(s) 1218
AcuI CTGAAG 3 cut(s) 173, 770, 823
AcyI GRCGYC 3 cut(s) 353, 1169, 1230
AfaI GTAC 2 cut(s) 12, 24
AfiI CCNNNNNNNGG 5 cut(s) 38, 66, 225, 419, 1221
AgsI TTSAA 6 cut(s) 167, 261, 325, 605, 703, 955
AjnI CCWGG 3 cut(s) 632, 656, 1220
AluBI AGCT 3 cut(s) 148, 157, 1261
AluI AGCT 3 cut(s) 148, 157, 1261
Alw26I GTCTC 3 cut(s) 212, 347, 906
AlwI GGATC 4 cut(s) 404, 430, 559, 700
AlwNI CAGNNNCTG 1 cut(s) 725
AoxI GGCC 6 cut(s) 659, 780, 1107, 1134, 1148, 1218
ApeKI GCWGC 1 cut(s) 627
AseI ATTAAT 1 cut(s) 248
AspLEI GCGC 5 cut(s) 115, 125, 130, 339, 1192
AspS9I GGNCC 2 cut(s) 88, 804
AsuHPI GGTGA 4 cut(s) 208, 708, 750, 976
AsuII TTCGAA 1 cut(s) 641
AvaII GGWCC 2 cut(s) 88, 804
BaeI ACNNNNGTAYC 2 cut(s) 388, 421
BbsI GAAGAC 3 cut(s) 332, 455, 487
BbvCI CCTCAGC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 614
BccI CCATC 3 cut(s) 129, 1021, 1190
BceAI ACGGC 2 cut(s) 739, 767
BciT130I CCWGG 3 cut(s) 634, 658, 1222
BcoDI GTCTC 3 cut(s) 212, 347, 906
BfuAI ACCTGC 1 cut(s) 605
BglI GCCNNNNNGGC 2 cut(s) 68, 136
BisI GCNGC 9 cut(s) 116, 126, 628, 794, 816, 819, 937, 1188, 1218
BlsI GCNGC 9 cut(s) 117, 127, 629, 795, 817, 820, 938, 1189, 1219
Bme1390I CCNGG 3 cut(s) 634, 658, 1222
Bme18I GGWCC 2 cut(s) 88, 804
BmgT120I GGNCC 2 cut(s) 88, 804
BmrFI CCNGG 3 cut(s) 634, 658, 1222
BmsI GCATC 4 cut(s) 92, 148, 321, 617
BpiI GAAGAC 3 cut(s) 332, 455, 487
BpmI CTGGAG 1 cut(s) 80
Bpu10I CCTNAGC 2 cut(s) 79, 1062
Bpu14I TTCGAA 1 cut(s) 641
Bsa29I ATCGAT 2 cut(s) 408, 1141
BsaBI GATNNNNATC 1 cut(s) 563
BsaHI GRCGYC 3 cut(s) 353, 1169, 1230
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 4 cut(s) 633, 783, 813, 1215
BsaWI WCCGGW 1 cut(s) 419
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 66, 225, 419, 1221
Bse118I RCCGGY 1 cut(s) 1171
Bse1I ACTGG 1 cut(s) 719
Bse8I GATNNNNATC 1 cut(s) 563
BseBI CCWGG 3 cut(s) 634, 658, 1222
BseCI ATCGAT 2 cut(s) 408, 1141
BseDI CCNNGG 4 cut(s) 633, 783, 813, 1215
BseGI GGATG 4 cut(s) 542, 849, 883, 1095
BseJI GATNNNNATC 1 cut(s) 563
BseLI CCNNNNNNNGG 5 cut(s) 38, 66, 225, 419, 1221
BseMII CTCAG 3 cut(s) 93, 1002, 1245
BseNI ACTGG 1 cut(s) 719
BseRI GAGGAG 4 cut(s) 225, 232, 896, 957
BseXI GCAGC 1 cut(s) 614
BseYI CCCAGC 2 cut(s) 157, 333
BsgI GTGCAG 2 cut(s) 564, 613
Bsh1236I CGCG 8 cut(s) 113, 123, 128, 339, 809, 815, 1190, 1217
Bsh1285I CGRYCG 1 cut(s) 1141
BshFI GGCC 6 cut(s) 661, 782, 1109, 1136, 1150, 1220
BshVI ATCGAT 2 cut(s) 408, 1141
BsiEI CGRYCG 1 cut(s) 1141
BsiSI CCGG 3 cut(s) 420, 553, 1172
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 5 cut(s) 38, 66, 225, 419, 1221
BsmAI GTCTC 3 cut(s) 212, 347, 906
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 6 cut(s) 661, 782, 1109, 1136, 1150, 1220
Bso31I GGTCTC 1 cut(s) 347
Bsp119I TTCGAA 1 cut(s) 641
BspANI GGCC 6 cut(s) 661, 782, 1109, 1136, 1150, 1220
BspCNI CTCAG 3 cut(s) 92, 1003, 1246
BspDI ATCGAT 2 cut(s) 408, 1141
BspFNI CGCG 8 cut(s) 113, 123, 128, 339, 809, 815, 1190, 1217
BspHI TCATGA 1 cut(s) 487
BspMI ACCTGC 1 cut(s) 605
BspPI GGATC 4 cut(s) 404, 430, 559, 700
BspT104I TTCGAA 1 cut(s) 641
BspTNI GGTCTC 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 1171
BsrI ACTGG 1 cut(s) 719
BssAI RCCGGY 1 cut(s) 1171
BssECI CCNNGG 4 cut(s) 633, 783, 813, 1215
BssNI GRCGYC 3 cut(s) 353, 1169, 1230
Bst2UI CCWGG 3 cut(s) 634, 658, 1222
Bst4CI ACNGT 3 cut(s) 275, 727, 1243
Bst6I CTCTTC 3 cut(s) 215, 794, 950
BstACI GRCGYC 3 cut(s) 353, 1169, 1230
BstAPI GCANNNNNTGC 1 cut(s) 1051
BstBI TTCGAA 1 cut(s) 641
BstC8I GCNNGC 1 cut(s) 1173
BstDEI CTNAG 6 cut(s) 79, 307, 435, 1011, 1062, 1254
BstDSI CCRYGG 3 cut(s) 783, 813, 1215
BstENI CCTNNNNNAGG 1 cut(s) 223
BstF5I GGATG 4 cut(s) 542, 849, 883, 1095
BstFNI CGCG 8 cut(s) 113, 123, 128, 339, 809, 815, 1190, 1217
BstHHI GCGC 5 cut(s) 115, 125, 130, 339, 1192
BstMAI GTCTC 3 cut(s) 212, 347, 906
BstMCI CGRYCG 1 cut(s) 1141
BstNI CCWGG 3 cut(s) 634, 658, 1222
BstSCI CCNGG 3 cut(s) 632, 656, 1220
BstUI CGCG 8 cut(s) 113, 123, 128, 339, 809, 815, 1190, 1217
BstV1I GCAGC 1 cut(s) 614
BstV2I GAAGAC 3 cut(s) 332, 455, 487
BstX2I RGATCY 2 cut(s) 564, 692
BstYI RGATCY 2 cut(s) 564, 692
Bsu15I ATCGAT 2 cut(s) 408, 1141
BsuRI GGCC 6 cut(s) 661, 782, 1109, 1136, 1150, 1220
BsuTUI ATCGAT 2 cut(s) 408, 1141
BtgI CCRYGG 3 cut(s) 783, 813, 1215
BtgZI GCGATG 3 cut(s) 836, 1168, 1234
BtsCI GGATG 4 cut(s) 542, 849, 883, 1095
BtsIMutI CAGTG 1 cut(s) 723
BveI ACCTGC 1 cut(s) 605
Cac8I GCNNGC 1 cut(s) 1173
CaiI CAGNNNCTG 1 cut(s) 725
CciI TCATGA 1 cut(s) 487
CfoI GCGC 5 cut(s) 115, 125, 130, 339, 1192
Cfr10I RCCGGY 1 cut(s) 1171
Cfr13I GGNCC 2 cut(s) 88, 804
Cfr42I CCGCGG 2 cut(s) 816, 1218
ClaI ATCGAT 2 cut(s) 408, 1141
CseI GACGC 5 cut(s) 262, 361, 798, 1177, 1238
Csp6I GTAC 2 cut(s) 11, 23
CviAII CATG 2 cut(s) 488, 1096
CviQI GTAC 2 cut(s) 11, 23
DdeI CTNAG 6 cut(s) 79, 307, 435, 1011, 1062, 1254
EaeI YGGCCR 1 cut(s) 1218
Eam1104I CTCTTC 3 cut(s) 215, 794, 950
EarI CTCTTC 3 cut(s) 215, 794, 950
EciI GGCGGA 3 cut(s) 402, 872, 902
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 2 cut(s) 88, 804
Eco57I CTGAAG 3 cut(s) 173, 770, 823
EcoNI CCTNNNNNAGG 1 cut(s) 223
EcoRII CCWGG 3 cut(s) 632, 656, 1220
FaeI CATG 2 cut(s) 491, 1099
FaiI YATR 6 cut(s) 49, 172, 222, 290, 489, 1097
FaqI GGGAC 1 cut(s) 163
FatI CATG 2 cut(s) 487, 1095
Fnu4HI GCNGC 9 cut(s) 116, 126, 628, 794, 816, 819, 937, 1188, 1218
FokI GGATG 4 cut(s) 549, 856, 890, 1102
Fsp4HI GCNGC 9 cut(s) 116, 126, 628, 794, 816, 819, 937, 1188, 1218
GlaI GCGC 5 cut(s) 114, 124, 129, 338, 1191
GluI GCNGC 9 cut(s) 116, 126, 628, 794, 816, 819, 937, 1188, 1218
GsaI CCCAGC 2 cut(s) 161, 337
GsuI CTGGAG 1 cut(s) 80
HaeIII GGCC 6 cut(s) 661, 782, 1109, 1136, 1150, 1220
HapII CCGG 3 cut(s) 420, 553, 1172
HgaI GACGC 5 cut(s) 262, 361, 798, 1177, 1238
HhaI GCGC 5 cut(s) 115, 125, 130, 339, 1192
Hin1I GRCGYC 3 cut(s) 353, 1169, 1230
Hin1II CATG 2 cut(s) 491, 1099
Hin6I GCGC 5 cut(s) 113, 123, 128, 337, 1190
HinP1I GCGC 5 cut(s) 113, 123, 128, 337, 1190
HincII GTYRAC 2 cut(s) 286, 432
HindII GTYRAC 2 cut(s) 286, 432
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 2 cut(s) 680, 1143
HpaI GTTAAC 1 cut(s) 432
HpaII CCGG 3 cut(s) 420, 553, 1172
HphI GGTGA 4 cut(s) 208, 708, 750, 976
Hpy166II GTNNAC 3 cut(s) 286, 432, 745
Hpy188III TCNNGA 8 cut(s) 97, 488, 521, 562, 703, 775, 841, 1207
Hpy8I GTNNAC 3 cut(s) 286, 432, 745
Hpy99I CGWCG 7 cut(s) 506, 872, 923, 1171, 1205, 1208, 1232
HpyAV CCTTC 5 cut(s) 518, 772, 866, 941, 1161
HpyCH4III ACNGT 3 cut(s) 275, 727, 1243
HpyCH4V TGCA 4 cut(s) 479, 545, 630, 1054
HpyF3I CTNAG 6 cut(s) 79, 307, 435, 1011, 1062, 1254
Hsp92I GRCGYC 3 cut(s) 353, 1169, 1230
Hsp92II CATG 2 cut(s) 491, 1099
HspAI GCGC 5 cut(s) 113, 123, 128, 337, 1190
KroI GCCGGC 1 cut(s) 1171
KroNI GCCGGC 1 cut(s) 1173
KspAI GTTAAC 1 cut(s) 432
KspI CCGCGG 2 cut(s) 816, 1218
Lsp1109I GCAGC 1 cut(s) 614
LweI GCATC 4 cut(s) 92, 148, 321, 617
MaeIII GTNAC 5 cut(s) 275, 377, 714, 721, 756
MboII GAAGA 9 cut(s) 202, 337, 455, 487, 645, 811, 829, 872, 967
MflI RGATCY 2 cut(s) 564, 692
MluCI AATT 3 cut(s) 27, 162, 1115
MlyI GAGTC 1 cut(s) 674
MmeI TCCRAC 3 cut(s) 56, 1017, 1110
MroNI GCCGGC 1 cut(s) 1171
MseI TTAA 3 cut(s) 248, 431, 593
MspA1I CMGCKG 3 cut(s) 739, 815, 1217
MspI CCGG 3 cut(s) 420, 553, 1172
MspR9I CCNGG 3 cut(s) 634, 658, 1222
MteI GCGCNGCGC 1 cut(s) 126
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 3 cut(s) 634, 658, 1222
MvnI CGCG 8 cut(s) 113, 123, 128, 339, 809, 815, 1190, 1217
NaeI GCCGGC 1 cut(s) 1173
NgoMIV GCCGGC 1 cut(s) 1171
NlaIII CATG 2 cut(s) 491, 1099
NmeAIII GCCGAG 2 cut(s) 833, 1242
NmuCI GTSAC 3 cut(s) 714, 721, 756
NspV TTCGAA 1 cut(s) 641
PagI TCATGA 1 cut(s) 487
PcsI WCGNNNNNNNCGW 2 cut(s) 675, 780
PctI GAATGC 1 cut(s) 256
PdiI GCCGGC 1 cut(s) 1173
PfeI GAWTC 1 cut(s) 1143
PkrI GCNGC 9 cut(s) 117, 127, 629, 795, 817, 820, 938, 1189, 1219
Ple19I CGATCG 1 cut(s) 1141
PleI GAGTC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 674
PshBI ATTAAT 1 cut(s) 248
Psp6I CCWGG 3 cut(s) 632, 656, 1220
PspFI CCCAGC 2 cut(s) 157, 333
PspGI CCWGG 3 cut(s) 632, 656, 1220
PspPI GGNCC 2 cut(s) 88, 804
PstNI CAGNNNCTG 1 cut(s) 725
PsuI RGATCY 2 cut(s) 564, 692
PvuI CGATCG 1 cut(s) 1141
RsaI GTAC 2 cut(s) 12, 24
RsaNI GTAC 2 cut(s) 11, 23
SacII CCGCGG 2 cut(s) 816, 1218
SaqAI TTAA 3 cut(s) 248, 431, 593
SatI GCNGC 9 cut(s) 116, 126, 628, 794, 816, 819, 937, 1188, 1218
Sau96I GGNCC 2 cut(s) 88, 804
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 3 cut(s) 634, 658, 1222
SfaNI GCATC 4 cut(s) 92, 148, 321, 617
Sfr303I CCGCGG 2 cut(s) 816, 1218
SfuI TTCGAA 1 cut(s) 641
SgrBI CCGCGG 2 cut(s) 816, 1218
SinI GGWCC 2 cut(s) 88, 804
Sse9I AATT 3 cut(s) 27, 162, 1115
StyD4I CCNGG 3 cut(s) 632, 656, 1220
TaaI ACNGT 3 cut(s) 275, 727, 1243
TaqI TCGA 8 cut(s) 186, 408, 520, 641, 669, 678, 1141, 1227
TasI AATT 3 cut(s) 27, 162, 1115
TauI GCSGC 8 cut(s) 118, 128, 796, 818, 821, 939, 1190, 1220
TfiI GAWTC 1 cut(s) 1143
Tru1I TTAA 3 cut(s) 248, 431, 593
Tru9I TTAA 3 cut(s) 248, 431, 593
TscAI CASTG 1 cut(s) 730
TseFI GTSAC 3 cut(s) 714, 721, 756
TseI GCWGC 1 cut(s) 627
Tsp45I GTSAC 3 cut(s) 714, 721, 756
TspDTI ATGAA 5 cut(s) 497, 504, 564, 839, 1084
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 1 cut(s) 730
VpaK11BI GGWCC 2 cut(s) 88, 804
VspI ATTAAT 1 cut(s) 248
XagI CCTNNNNNAGG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.