Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003962

Physical Location & Seq

Genomic Coordinates Reverse (-)

995297 .. 999825

Gene Structure 4529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0012700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1788 bp

ATGGAAGATCATTCTCTAGTTCCTGTACCCGATGATTCTCTAAGCTTGACAGACTATGCATTAGCTATTGGGCAAGAATTTCCTGATGTTGAAACTTGCCGAAGAGCATTGAAGGATGTTGCCATTGCAATGCATTTTGATCTTCGTATCGTCAAATCAGATCGAAGCCGGTTTATAGCCAAGTGCTCCAAAGAAGGCTGTCCATGGCGTGTCCATGTAGCAAAATGTCCTGGAGTTCCCACCTTTACAATAAGAACCCTGCATGGTGAGCATACCTGTGAAGGAGTCCGCCACCTTCATCATCAGCAAGCATCAGTAGGTTGGGTTGCTAGGTCTGTGGAAGCTCGAGTTCGGGATAATCCACGATATAAACCAAAAGAGATCCTGCAAGATATCCGTGATCAGCATGGGGTTGCTGTTTCTTACATGCAAGCGTGGCGTGGCAAGGAGCGTAGCATGGCAGCGCTTCATGGAACTCTTGAGGAAGGATATCGCCTTCTTCCTGCCTACTGTGAGCAAATAAGGAAAACCAATCCAGGAAGCATTGCTTCAGTTTTTGCCTCTGGACAAGAAAATTGTTTCCAGCGGCTCTTTGTTTCCTACCGTGCATCAATTTATGGGTTTATACATGCTTGTAGACCACTTGTAGAACTTGACAAAGCACATCTTAAAGGCAAATACCTGGGTACATTACTCTGTGCTGCATCTGTTGATGCTGATGATGCATTATTTCCACTGGCAATAGCTATTGTTGATGTTGAAAGTGACGAGAATTGGATGTGGTTTATGTCAGAATTACGAAAGCTTCTTGGAGTAAACACTGACAACATGCCTAGACTTACAATACTCTCTGAAAGACAAAAGGGCATTGTGGAAGCCGTGGAAACTCATTTCCCAAGTGCCTTTCATGGTTTTTGTCTGCGTTATGTAAGTGAAAATTTTCGTGATACATTTAAGAACACAAAGTTGGTGAATATCTTCTGGAATGCTGTTTATGCTCTCACTGCAGTTGAATTTGAGAGCAAGATTGCAGAGATGATGGAGATCTCACAAGACGTGATACCATGGTTTCAACACTTCCCTCCTCAACTTTGGGCTGTAGCATACTTTGAAGGTGTGCGATTTGGCCATTTTACCCTCGGGGTTACAGAGCTGCTGTATAATTGGGCCCTTGAATGCCATGAGCTCCCTATTGTGCAAATGATGGAGCATATCCGTCATCAGTTGGCATCGTGGTTTAATGATCGTAGGGATATGGGCATGAGGTTGACATCGATTCTAGTACCTTCTGCTGAGAAGCGAATTTTAGAGGCAATTGCTGATGCTCGCTGCTATCAAGTGCTTCGTGCAAATGAAGTTGAATTTGAAATTGTATCAACTGAACGGACAAATATCGTGGATATAAGAACTCGAGTGTGCTCATGTCGTCGTTGGCATATATATGGTTTACCTTGTGCGCATGCTGCTGCTGCACTTATTTCTTGTGGACACAATGTCCCTTTATTTGCTGAGCCTTGCTTCACAGTAGCAAGTTACAGAGAGACCTATTCACAAATGATTCATCCTATTCCAGATAAGAGCTTATGGAATGAGCCCGGTGAAGGAACAGAGGGTGGGAGTGCCAAGGTTGATATCACGATTCGTCCACCCAAGACTAGGCGTCCCCCTGGCAGACCGAAAAAGAAGGTCCTTCGTGTAGAGAACTTCAAGCGCCCAAAGAGAGTTGTTCAATGTGGTCGGTGCCATATGTTAGGACATTCTCAAAAGAAATGCACCTTGCCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

595

Amino Acids

67.9

Weight (kDa)

8.5

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBD_Tnp_Mut	PF03108	20 - 84	1.4e-23	MuDR family transposase
MULE	PF10551	216 - 313	1.1e-14	MULE transposase domain
SWIM	PF04434	466 - 496	1.9e-09	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003962)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318821 RchiOBHm_Chr1g0318831 RchiOBHm_Chr1g0346331 RchiOBHm_Chr4g0409541 RchiOBHm_Chr5g0051691 RchiOBHm_Chr7g0235061 RchiOBHm_Chr7g0235071
rosa_multiflora	Rmu_co8511089.1_g000002 Rmu_sc0001141.1_g000012 Rmu_sc0007791.1_g000003 Rmu_sc0009346.1_g000011 Rmu_sc0014538.1_g000001 Rmu_ssc0000368.1_g000052
rosa_roxburghii	Rroxscaffold_1G00017540 Rroxscaffold_5G00346710 Rroxscaffold_5G00350080 Rroxscaffold_5G00363030
rosa_rugosa	Rorug01G0067000 Rorug01G0211600 Rorug02G0440000 Rorug02G0478600 Rorug03G0012700 Rorug04G0064400 Rorug04G0083800 Rorug05G0214100 Rorug06G0052700 Rorug07G0206200 Rorug07G0268600 Rorug07G0313000
rosa_samantha	Rh4CG156700 Rh5BG128100 Rh5BG361200 Rh7BG438500 Rh7CG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1458
AccB1I	GGYRCC	1 cut(s)	1740
AccI	GTMKAC	1 cut(s)	637
AciI	CCGC	2 cut(s)	289, 586
AclWI	GGATC	1 cut(s)	376
AcoI	YGGCCR	1 cut(s)	1126
AcsI	RAATTY	5 cut(s)	77, 937, 1013, 1302, 1361
AcuI	CTGAAG	1 cut(s)	534
AcyI	GRCGYC	1 cut(s)	1660
AfaI	GTAC	3 cut(s)	27, 688, 1284
AfeI	AGCGCT	1 cut(s)	465
AfiI	CCNNNNNNNGG	2 cut(s)	1601, 1656
AhdI	GACNNNNNGTC	2 cut(s)	1493, 1659
AjiI	CACGTC	1 cut(s)	1057
AjnI	CCWGG	4 cut(s)	229, 535, 681, 1666
AjuI	GAANNNNNNNTTGG	2 cut(s)	950, 982
AluBI	AGCT	8 cut(s)	45, 65, 344, 746, 805, 1153, 1186, 1581
AluI	AGCT	8 cut(s)	45, 65, 344, 746, 805, 1153, 1186, 1581
Alw21I	GWGCWC	3 cut(s)	188, 1188, 1421
Alw26I	GTCTC	1 cut(s)	1535
AlwI	GGATC	1 cut(s)	376
Ama87I	CYCGRG	3 cut(s)	345, 1139, 1410
Aor51HI	AGCGCT	1 cut(s)	465
AoxI	GGCC	2 cut(s)	1126, 1167
ApaI	GGGCCC	1 cut(s)	1171
ApeKI	GCWGC	7 cut(s)	461, 701, 1153, 1329, 1463, 1466, 1469
ApoI	RAATTY	5 cut(s)	77, 937, 1013, 1302, 1361
Asp700I	GAANNNNTTC	2 cut(s)	939, 977
AspLEI	GCGC	3 cut(s)	466, 1459, 1713
AspS9I	GGNCC	3 cut(s)	1167, 1168, 1687
AsuC2I	CCSGG	1 cut(s)	1596
AsuHPI	GGTGA	3 cut(s)	278, 982, 1610
AvaI	CYCGRG	3 cut(s)	345, 1139, 1410
AvaII	GGWCC	1 cut(s)	1687
BaeGI	GKGCMC	1 cut(s)	1171
BaeI	ACNNNNGTAYC	2 cut(s)	1052, 1085
BalI	TGGCCA	1 cut(s)	1128
BanI	GGYRCC	1 cut(s)	1740
BanII	GRGCYC	3 cut(s)	1171, 1188, 1596
Bbv12I	GWGCWC	3 cut(s)	188, 1188, 1421
BbvI	GCAGC	7 cut(s)	473, 688, 1140, 1316, 1450, 1453, 1456
BccI	CCATC	2 cut(s)	1033, 1198
BceAI	ACGGC	1 cut(s)	863
BciT130I	CCWGG	4 cut(s)	231, 537, 683, 1668
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	1 cut(s)	1596
BcoDI	GTCTC	1 cut(s)	1535
BfaI	CTAG	5 cut(s)	17, 330, 834, 1280, 1656
BfmI	CTRYAG	2 cut(s)	1005, 1098
BfoI	RGCGCY	2 cut(s)	467, 1714
BglII	AGATCT	1 cut(s)	1044
BisI	GCNGC	8 cut(s)	462, 587, 702, 1154, 1330, 1464, 1467, 1470
BlpI	GCTNAGC	1 cut(s)	1509
BlsI	GCNGC	8 cut(s)	463, 588, 703, 1155, 1331, 1465, 1468, 1471
Bme1390I	CCNGG	5 cut(s)	231, 537, 683, 1596, 1668
Bme18I	GGWCC	1 cut(s)	1687
BmeRI	GACNNNNNGTC	2 cut(s)	1493, 1659
BmeT110I	CYCGRG	3 cut(s)	345, 1139, 1410
BmgBI	CACGTC	1 cut(s)	1057
BmgT120I	GGNCC	3 cut(s)	1167, 1168, 1687
BmiI	GGNNCC	2 cut(s)	1169, 1742
BmrFI	CCNGG	5 cut(s)	231, 537, 683, 1596, 1668
BmsI	GCATC	7 cut(s)	320, 617, 703, 712, 713, 1238, 1312
BpmI	CTGGAG	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	1509
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	1596
Bsa29I	ATCGAT	1 cut(s)	1274
BsaBI	GATNNNNATC	1 cut(s)	1043
BsaHI	GRCGYC	1 cut(s)	1660
BsaI	GGTCTC	1 cut(s)	1535
BsaJI	CCNNGG	7 cut(s)	203, 682, 879, 1064, 1138, 1623, 1666
Bsc4I	CCNNNNNNNGG	2 cut(s)	1601, 1656
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	741
Bse3DI	GCAATG	3 cut(s)	123, 135, 543
Bse8I	GATNNNNATC	1 cut(s)	1043
BseBI	CCWGG	4 cut(s)	231, 537, 683, 1668
BseCI	ATCGAT	1 cut(s)	1274
BseDI	CCNNGG	7 cut(s)	203, 682, 879, 1064, 1138, 1623, 1666
BseGI	GGATG	3 cut(s)	121, 783, 1561
BseJI	GATNNNNATC	1 cut(s)	1043
BseLI	CCNNNNNNNGG	2 cut(s)	1601, 1656
BseMI	GCAATG	3 cut(s)	123, 135, 543
BseMII	CTCAG	2 cut(s)	1284, 1500
BseNI	ACTGG	1 cut(s)	741
BseRI	GAGGAG	1 cut(s)	1074
BseSI	GKGCMC	1 cut(s)	1171
BseXI	GCAGC	7 cut(s)	473, 688, 1140, 1316, 1450, 1453, 1456
BsgI	GTGCAG	1 cut(s)	1455
BshFI	GGCC	2 cut(s)	1128, 1169
BshNI	GGYRCC	1 cut(s)	1740
BshVI	ATCGAT	1 cut(s)	1274
BsiHKAI	GWGCWC	3 cut(s)	188, 1188, 1421
BsiHKCI	CYCGRG	3 cut(s)	345, 1139, 1410
BsiSI	CCGG	2 cut(s)	169, 1596
BslFI	GGGAC	2 cut(s)	1481, 1647
BslI	CCNNNNNNNGG	2 cut(s)	1601, 1656
BsmAI	GTCTC	1 cut(s)	1535
BsmFI	GGGAC	2 cut(s)	1481, 1647
BsmI	GAATGC	2 cut(s)	991, 1181
BsnI	GGCC	2 cut(s)	1128, 1169
Bso31I	GGTCTC	1 cut(s)	1535
BsoBI	CYCGRG	3 cut(s)	345, 1139, 1410
Bsp120I	GGGCCC	1 cut(s)	1167
Bsp1286I	GDGCHC	5 cut(s)	188, 1171, 1188, 1421, 1596
Bsp143I	GATC	7 cut(s)	7, 139, 160, 381, 400, 1044, 1243
Bsp1720I	GCTNAGC	1 cut(s)	1509
Bsp19I	CCATGG	2 cut(s)	203, 1064
BspACI	CCGC	2 cut(s)	289, 586
BspANI	GGCC	2 cut(s)	1128, 1169
BspCNI	CTCAG	2 cut(s)	1285, 1501
BspDI	ATCGAT	1 cut(s)	1274
BspLI	GGNNCC	2 cut(s)	1169, 1742
BspMAI	CTGCAG	1 cut(s)	1009
BspPI	GGATC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	97
BspT107I	GGYRCC	1 cut(s)	1740
BspTNI	GGTCTC	1 cut(s)	1535
BsrDI	GCAATG	3 cut(s)	123, 135, 543
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	741
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	7 cut(s)	203, 682, 879, 1064, 1138, 1623, 1666
BssMI	GATC	7 cut(s)	7, 139, 160, 381, 400, 1044, 1243
BssNI	GRCGYC	1 cut(s)	1660
BssT1I	CCWWGG	3 cut(s)	203, 1064, 1623
Bst2UI	CCWGG	4 cut(s)	231, 537, 683, 1668
Bst4CI	ACNGT	3 cut(s)	512, 605, 1525
Bst6I	CTCTTC	1 cut(s)	97
BstACI	GRCGYC	1 cut(s)	1660
BstC8I	GCNNGC	4 cut(s)	309, 432, 1327, 1461
BstDEI	CTNAG	3 cut(s)	41, 1293, 1509
BstDSI	CCRYGG	3 cut(s)	203, 879, 1064
BstF5I	GGATG	3 cut(s)	121, 783, 1561
BstH2I	RGCGCY	2 cut(s)	467, 1714
BstHHI	GCGC	3 cut(s)	466, 1459, 1713
BstKTI	GATC	7 cut(s)	10, 142, 163, 384, 403, 1047, 1246
BstMAI	GTCTC	1 cut(s)	1535
BstMBI	GATC	7 cut(s)	7, 139, 160, 381, 400, 1044, 1243
BstMWI	GCNNNNNNNGC	7 cut(s)	268, 436, 722, 995, 1004, 1463, 1469
BstNI	CCWGG	4 cut(s)	231, 537, 683, 1668
BstNSI	RCATGY	4 cut(s)	430, 632, 832, 1463
BstSCI	CCNGG	5 cut(s)	229, 535, 681, 1594, 1666
BstSFI	CTRYAG	2 cut(s)	1005, 1098
BstSLI	GKGCMC	1 cut(s)	1171
BstV1I	GCAGC	7 cut(s)	473, 688, 1140, 1316, 1450, 1453, 1456
BstX2I	RGATCY	2 cut(s)	381, 1044
BstYI	RGATCY	2 cut(s)	381, 1044
Bsu15I	ATCGAT	1 cut(s)	1274
BsuRI	GGCC	2 cut(s)	1128, 1169
BsuTUI	ATCGAT	1 cut(s)	1274
BtgI	CCRYGG	3 cut(s)	203, 879, 1064
BtrI	CACGTC	1 cut(s)	1057
BtsCI	GGATG	3 cut(s)	121, 783, 1561
BtsI	GCAGTG	1 cut(s)	1002
BtsIMutI	CAGTG	3 cut(s)	734, 819, 1002
Cac8I	GCNNGC	4 cut(s)	309, 432, 1327, 1461
CfoI	GCGC	3 cut(s)	466, 1459, 1713
Cfr10I	RCCGGY	1 cut(s)	168
Cfr13I	GGNCC	3 cut(s)	1167, 1168, 1687
ClaI	ATCGAT	1 cut(s)	1274
CseI	GACGC	1 cut(s)	1649
Csp6I	GTAC	3 cut(s)	26, 687, 1283
CspCI	CAANNNNNGTGG	2 cut(s)	1377, 1412
CviQI	GTAC	3 cut(s)	26, 687, 1283
DdeI	CTNAG	3 cut(s)	41, 1293, 1509
DpnI	GATC	7 cut(s)	9, 141, 162, 383, 402, 1046, 1245
DpnII	GATC	7 cut(s)	7, 139, 160, 381, 400, 1044, 1243
DriI	GACNNNNNGTC	2 cut(s)	1493, 1659
EaeI	YGGCCR	1 cut(s)	1126
Eam1104I	CTCTTC	1 cut(s)	97
Eam1105I	GACNNNNNGTC	2 cut(s)	1493, 1659
EarI	CTCTTC	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	1186
Eco130I	CCWWGG	3 cut(s)	203, 1064, 1623
Eco24I	GRGCYC	3 cut(s)	1171, 1188, 1596
Eco31I	GGTCTC	1 cut(s)	1535
Eco32I	GATATC	3 cut(s)	394, 491, 1633
Eco47I	GGWCC	1 cut(s)	1687
Eco47III	AGCGCT	1 cut(s)	465
Eco53kI	GAGCTC	1 cut(s)	1186
Eco57I	CTGAAG	1 cut(s)	534
Eco88I	CYCGRG	3 cut(s)	345, 1139, 1410
EcoICRI	GAGCTC	1 cut(s)	1186
EcoO109I	RGGNCCY	2 cut(s)	1168, 1687
EcoRII	CCWGG	4 cut(s)	229, 535, 681, 1666
EcoRV	GATATC	3 cut(s)	394, 491, 1633
EcoT14I	CCWWGG	3 cut(s)	203, 1064, 1623
EcoT22I	ATGCAT	3 cut(s)	61, 135, 727
EcoT38I	GRGCYC	3 cut(s)	1171, 1188, 1596
ErhI	CCWWGG	3 cut(s)	203, 1064, 1623
FalI	AAGNNNNNCTT	4 cut(s)	532, 564, 651, 683
FaqI	GGGAC	2 cut(s)	1481, 1647
FauNDI	CATATG	1 cut(s)	1746
FbaI	TGATCA	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	637
Fnu4HI	GCNGC	8 cut(s)	462, 587, 702, 1154, 1330, 1464, 1467, 1470
FokI	GGATG	3 cut(s)	128, 790, 1548
FriOI	GRGCYC	3 cut(s)	1171, 1188, 1596
Fsp4HI	GCNGC	8 cut(s)	462, 587, 702, 1154, 1330, 1464, 1467, 1470
FspAI	RTGCGCAY	1 cut(s)	1458
FspBI	CTAG	5 cut(s)	17, 330, 834, 1280, 1656
FspI	TGCGCA	1 cut(s)	1458
GlaI	GCGC	3 cut(s)	465, 1458, 1712
GluI	GCNGC	8 cut(s)	462, 587, 702, 1154, 1330, 1464, 1467, 1470
GsuI	CTGGAG	1 cut(s)	252
HaeII	RGCGCY	2 cut(s)	467, 1714
HaeIII	GGCC	2 cut(s)	1128, 1169
HapII	CCGG	2 cut(s)	169, 1596
HgaI	GACGC	1 cut(s)	1649
HhaI	GCGC	3 cut(s)	466, 1459, 1713
Hin1I	GRCGYC	1 cut(s)	1660
Hin6I	GCGC	3 cut(s)	464, 1457, 1711
HinP1I	GCGC	3 cut(s)	464, 1457, 1711
HincII	GTYRAC	1 cut(s)	1269
HindII	GTYRAC	1 cut(s)	1269
HindIII	AAGCTT	2 cut(s)	43, 803
HinfI	GANTC	5 cut(s)	35, 285, 1276, 1558, 1639
HpaII	CCGG	2 cut(s)	169, 1596
HphI	GGTGA	3 cut(s)	278, 982, 1610
Hpy166II	GTNNAC	6 cut(s)	638, 817, 1269, 1448, 1487, 1646
Hpy188I	TCNGA	3 cut(s)	160, 793, 853
Hpy188III	TCNNGA	8 cut(s)	83, 353, 479, 564, 944, 982, 1571, 1636
Hpy8I	GTNNAC	6 cut(s)	638, 817, 1269, 1448, 1487, 1646
Hpy99I	CGWCG	1 cut(s)	1431
HpyCH4III	ACNGT	3 cut(s)	512, 605, 1525
HpyCH4IV	ACGT	1 cut(s)	1056
HpyF10VI	GCNNNNNNNGC	7 cut(s)	268, 436, 722, 995, 1004, 1463, 1469
HpyF3I	CTNAG	3 cut(s)	41, 1293, 1509
HpySE526I	ACGT	1 cut(s)	1056
Hsp92I	GRCGYC	1 cut(s)	1660
HspAI	GCGC	3 cut(s)	464, 1457, 1711
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	7 cut(s)	7, 139, 160, 381, 400, 1044, 1243
LguI	GCTCTTC	1 cut(s)	97
LmnI	GCTCC	4 cut(s)	191, 448, 1191, 1207
Lsp1109I	GCAGC	7 cut(s)	473, 688, 1140, 1316, 1450, 1453, 1456
LweI	GCATC	7 cut(s)	320, 617, 703, 712, 713, 1238, 1312
MaeI	CTAG	5 cut(s)	17, 330, 834, 1280, 1656
MaeII	ACGT	1 cut(s)	1056
MaeIII	GTNAC	3 cut(s)	764, 1144, 1532
MalI	GATC	7 cut(s)	9, 141, 162, 383, 402, 1046, 1245
MboI	GATC	7 cut(s)	7, 139, 160, 381, 400, 1044, 1243
MboII	GAAGA	5 cut(s)	17, 114, 134, 491, 970
MfeI	CAATTG	1 cut(s)	1314
MflI	RGATCY	2 cut(s)	381, 1044
MhlI	GDGCHC	5 cut(s)	188, 1171, 1188, 1421, 1596
MlsI	TGGCCA	1 cut(s)	1128
MluNI	TGGCCA	1 cut(s)	1128
MlyI	GAGTC	1 cut(s)	294
MnlI	CCTC	8 cut(s)	475, 571, 1092, 1095, 1148, 1257, 1303, 1603
Mox20I	TGGCCA	1 cut(s)	1128
Mph1103I	ATGCAT	3 cut(s)	61, 135, 727
MroXI	GAANNNNTTC	2 cut(s)	939, 977
MscI	TGGCCA	1 cut(s)	1128
MseI	TTAA	3 cut(s)	669, 954, 1239
MslI	CAYNNNNRTG	3 cut(s)	128, 276, 1440
Msp20I	TGGCCA	1 cut(s)	1128
MspA1I	CMGCKG	1 cut(s)	586
MspI	CCGG	2 cut(s)	169, 1596
MspR9I	CCNGG	5 cut(s)	231, 537, 683, 1596, 1668
MunI	CAATTG	1 cut(s)	1314
Mva1269I	GAATGC	2 cut(s)	991, 1181
MvaI	CCWGG	4 cut(s)	231, 537, 683, 1668
MwoI	GCNNNNNNNGC	7 cut(s)	268, 436, 722, 995, 1004, 1463, 1469
NciI	CCSGG	1 cut(s)	1596
NcoI	CCATGG	2 cut(s)	203, 1064
NdeI	CATATG	1 cut(s)	1746
NdeII	GATC	7 cut(s)	7, 139, 160, 381, 400, 1044, 1243
NlaIV	GGNNCC	2 cut(s)	1169, 1742
NmuCI	GTSAC	1 cut(s)	764
NsbI	TGCGCA	1 cut(s)	1458
NsiI	ATGCAT	3 cut(s)	61, 135, 727
NspI	RCATGY	4 cut(s)	430, 632, 832, 1463
PaeI	GCATGC	1 cut(s)	1463
PaeR7I	CTCGAG	2 cut(s)	345, 1410
PciSI	GCTCTTC	1 cut(s)	97
PctI	GAATGC	2 cut(s)	991, 1181
PdmI	GAANNNNTTC	2 cut(s)	939, 977
PfeI	GAWTC	4 cut(s)	35, 1276, 1558, 1639
PfoI	TCCNGGA	2 cut(s)	229, 535
PkrI	GCNGC	8 cut(s)	463, 588, 703, 1155, 1331, 1465, 1468, 1471
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PpuMI	RGGWCCY	1 cut(s)	1687
Psp124BI	GAGCTC	1 cut(s)	1188
Psp5II	RGGWCCY	1 cut(s)	1687
Psp6I	CCWGG	4 cut(s)	229, 535, 681, 1666
PspGI	CCWGG	4 cut(s)	229, 535, 681, 1666
PspN4I	GGNNCC	2 cut(s)	1169, 1742
PspOMI	GGGCCC	1 cut(s)	1167
PspPI	GGNCC	3 cut(s)	1167, 1168, 1687
PspPPI	RGGWCCY	1 cut(s)	1687
PspXI	VCTCGAGB	2 cut(s)	345, 1410
PstI	CTGCAG	1 cut(s)	1009
PsuI	RGATCY	2 cut(s)	381, 1044
RsaI	GTAC	3 cut(s)	27, 688, 1284
RsaNI	GTAC	3 cut(s)	26, 687, 1283
RseI	CAYNNNNRTG	3 cut(s)	128, 276, 1440
SacI	GAGCTC	1 cut(s)	1188
SapI	GCTCTTC	1 cut(s)	97
SaqAI	TTAA	3 cut(s)	669, 954, 1239
SatI	GCNGC	8 cut(s)	462, 587, 702, 1154, 1330, 1464, 1467, 1470
Sau3AI	GATC	7 cut(s)	7, 139, 160, 381, 400, 1044, 1243
Sau96I	GGNCC	3 cut(s)	1167, 1168, 1687
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	5 cut(s)	231, 537, 683, 1596, 1668
SduI	GDGCHC	5 cut(s)	188, 1171, 1188, 1421, 1596
SfaNI	GCATC	7 cut(s)	320, 617, 703, 712, 713, 1238, 1312
SfcI	CTRYAG	2 cut(s)	1005, 1098
Sfr274I	CTCGAG	2 cut(s)	345, 1410
SinI	GGWCC	1 cut(s)	1687
SlaI	CTCGAG	2 cut(s)	345, 1410
SmiMI	CAYNNNNRTG	3 cut(s)	128, 276, 1440
SmlI	CTYRAG	3 cut(s)	345, 479, 1410
SmoI	CTYRAG	3 cut(s)	345, 479, 1410
SphI	GCATGC	1 cut(s)	1463
SsiI	CCGC	2 cut(s)	289, 586
SspMI	CTAG	5 cut(s)	17, 330, 834, 1280, 1656
SstI	GAGCTC	1 cut(s)	1188
StyD4I	CCNGG	5 cut(s)	229, 535, 681, 1594, 1666
StyI	CCWWGG	3 cut(s)	203, 1064, 1623
TaaI	ACNGT	3 cut(s)	512, 605, 1525
TaiI	ACGT	1 cut(s)	1059
TaqI	TCGA	4 cut(s)	163, 346, 1274, 1411
TaqII	GACCGA	1 cut(s)	1690
TauI	GCSGC	1 cut(s)	589
TfiI	GAWTC	4 cut(s)	35, 1276, 1558, 1639
Tru1I	TTAA	3 cut(s)	669, 954, 1239
Tru9I	TTAA	3 cut(s)	669, 954, 1239
TscAI	CASTG	3 cut(s)	741, 826, 1009
TseFI	GTSAC	1 cut(s)	764
TseI	GCWGC	7 cut(s)	461, 701, 1153, 1329, 1463, 1466, 1469
Tsp45I	GTSAC	1 cut(s)	764
TspDTI	ATGAA	5 cut(s)	287, 458, 896, 1368, 1550
TspGWI	ACGGA	3 cut(s)	386, 1205, 1399
TspRI	CASTG	3 cut(s)	741, 826, 1009
VpaK11BI	GGWCC	1 cut(s)	1687
XapI	RAATTY	5 cut(s)	77, 937, 1013, 1302, 1361
XceI	RCATGY	4 cut(s)	430, 632, 832, 1463
XhoI	CTCGAG	2 cut(s)	345, 1410
XmiI	GTMKAC	1 cut(s)	637
XmnI	GAANNNNTTC	2 cut(s)	939, 977
XspI	CTAG	5 cut(s)	17, 330, 834, 1280, 1656
Zsp2I	ATGCAT	3 cut(s)	61, 135, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.